Wall clock time and date at job start Mon Mar 8 2021 07:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00902 * 1 3 3 H 1.00896 * 109.46876 * 1 2 4 4 H 1.00902 * 109.46370 * 239.99783 * 1 2 3 5 5 C 1.46898 * 109.46824 * 120.00199 * 1 2 3 6 6 H 1.08996 * 109.47161 * 300.00331 * 5 1 2 7 7 C 1.53006 * 109.47037 * 59.99717 * 5 1 2 8 8 C 1.53002 * 109.46671 * 179.97438 * 7 5 1 9 9 C 1.52998 * 109.47293 * 300.00027 * 8 7 5 10 10 H 1.08992 * 109.47100 * 300.00097 * 9 8 7 11 11 N 1.46509 * 109.46586 * 180.02562 * 9 8 7 12 12 C 1.34772 * 119.99427 * 155.00169 * 11 9 8 13 13 O 1.21593 * 120.00307 * 359.97438 * 12 11 9 14 14 C 1.47567 * 120.00043 * 179.97438 * 12 11 9 15 15 C 1.40299 * 120.43335 * 180.02562 * 14 12 11 16 16 C 1.36906 * 118.52724 * 179.72507 * 15 14 12 17 17 C 1.39813 * 119.33096 * 0.52239 * 16 15 14 18 18 C 1.47405 * 119.59287 * 179.74357 * 17 16 15 19 19 C 1.36202 * 125.95347 * 179.72297 * 18 17 16 20 20 C 1.40704 * 106.72590 * 179.74906 * 19 18 17 21 21 C 1.34906 * 107.06086 * 0.37745 * 20 19 18 22 22 C 1.50696 * 125.64163 * 179.88727 * 21 20 19 23 23 O 1.42903 * 109.47131 * 299.70979 * 22 21 20 24 24 Si 1.86305 * 109.47185 * 179.71520 * 22 21 20 25 25 O 1.34160 * 108.71222 * 359.61857 * 21 20 19 26 26 N 1.33103 * 120.81935 * 359.46683 * 17 16 15 27 27 C 1.31475 * 121.59151 * 0.25315 * 26 17 16 28 28 C 1.52997 * 109.46919 * 60.00494 * 9 8 7 29 29 C 1.52998 * 109.46897 * 179.97438 * 5 1 2 30 30 H 1.08998 * 109.47157 * 60.00348 * 7 5 1 31 31 H 1.09001 * 109.47296 * 299.99799 * 7 5 1 32 32 H 1.09001 * 109.46672 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47133 * 60.00857 * 8 7 5 34 34 H 0.96999 * 120.00365 * 334.99930 * 11 9 8 35 35 H 1.07995 * 120.73389 * 359.96268 * 15 14 12 36 36 H 1.07995 * 120.33143 * 180.26456 * 16 15 14 37 37 H 1.08000 * 126.63580 * 359.97438 * 19 18 17 38 38 H 1.08002 * 126.46475 * 180.23681 * 20 19 18 39 39 H 1.08999 * 109.47358 * 59.71339 * 22 21 20 40 40 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 41 41 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 42 42 H 1.48492 * 109.99800 * 301.31995 * 24 22 21 43 43 H 1.08001 * 119.70381 * 180.02562 * 27 26 17 44 44 H 1.08992 * 109.47559 * 59.99884 * 28 9 8 45 45 H 1.09001 * 109.46931 * 179.97438 * 28 9 8 46 46 H 1.08998 * 109.47494 * 299.99772 * 29 5 1 47 47 H 1.08991 * 109.47003 * 60.00202 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3362 -0.4757 0.8239 5 6 -0.4896 -0.6925 -1.1994 6 1 -0.1262 -0.1788 -2.0894 7 6 0.0205 -2.1351 -1.1994 8 6 -0.4900 -2.8565 -2.4483 9 6 -2.0199 -2.8565 -2.4477 10 1 -2.3829 -3.3702 -1.5576 11 7 -2.5086 -3.5479 -3.6434 12 6 -3.7305 -4.1165 -3.6408 13 8 -4.4271 -4.0561 -2.6460 14 6 -4.2231 -4.8124 -4.8453 15 6 -5.4938 -5.4070 -4.8527 16 6 -5.9139 -6.0376 -5.9930 17 6 -5.0665 -6.0797 -7.1042 18 6 -5.5107 -6.7621 -8.3330 19 6 -4.7966 -6.8761 -9.4872 20 6 -5.5960 -7.6037 -10.3878 21 6 -6.7506 -7.8889 -9.7509 22 6 -7.9093 -8.6555 -10.3346 23 8 -8.4042 -7.9678 -11.4853 24 14 -9.2647 -8.7951 -9.0640 25 8 -6.6941 -7.3821 -8.5100 26 7 -3.8657 -5.5067 -7.0682 27 6 -3.4300 -4.8874 -5.9934 28 6 -2.5299 -1.4141 -2.4478 29 6 -2.0196 -0.6931 -1.1991 30 1 -0.3428 -2.6489 -0.3094 31 1 1.1105 -2.1350 -1.1994 32 1 -0.1262 -3.8840 -2.4485 33 1 -0.1269 -2.3428 -3.3385 34 1 -1.9528 -3.5964 -4.4369 35 1 -6.1280 -5.3648 -3.9796 36 1 -6.8885 -6.5014 -6.0323 37 1 -3.8066 -6.4867 -9.6736 38 1 -5.3354 -7.8797 -11.3989 39 1 -7.5769 -9.6529 -10.6224 40 1 -8.7178 -7.0714 -11.3032 41 1 -10.4135 -9.5486 -9.6275 42 1 -8.7538 -9.4802 -7.8497 43 1 -2.4505 -4.4325 -5.9978 44 1 -2.1670 -0.9004 -3.3379 45 1 -3.6200 -1.4141 -2.4479 46 1 -2.3826 -1.2072 -0.3092 47 1 -2.3832 0.3343 -1.1990 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_17119696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:38 Heat of formation + Delta-G solvation = 66.463832 kcal Electronic energy + Delta-G solvation = -29079.067451 eV Core-core repulsion = 24926.351314 eV Total energy + Delta-G solvation = -4152.716136 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.85306 -41.92532 -41.09632 -40.04502 -38.04302 -37.41019 -34.82185 -34.46349 -33.70875 -33.40617 -31.99461 -31.08932 -29.33024 -27.29885 -25.12012 -24.91538 -24.15579 -23.39086 -22.70191 -21.98203 -21.56505 -21.39873 -19.54631 -19.08342 -18.45761 -18.29314 -18.21059 -17.88891 -17.63814 -17.37990 -16.81092 -16.78699 -16.31489 -16.15271 -15.83152 -15.44549 -15.25601 -14.98985 -14.77443 -14.56712 -14.41454 -14.22299 -14.12421 -14.07840 -13.92198 -13.65868 -13.45671 -13.35118 -12.89157 -12.87524 -12.47564 -12.27364 -12.23870 -11.67373 -11.55279 -11.40114 -11.35455 -11.18470 -10.87985 -10.74988 -10.64293 -10.22003 -9.24883 -5.07315 -1.03495 0.03099 0.50079 1.09395 1.24001 1.34303 1.57932 1.65936 1.77821 1.86996 1.96232 2.66125 2.91735 3.11688 3.25995 3.27843 3.33377 3.46148 3.58897 3.61835 3.69139 3.72956 3.82975 3.89707 3.92013 3.96586 4.03500 4.12827 4.24011 4.26839 4.37911 4.43374 4.48090 4.50530 4.58758 4.64326 4.65676 4.72828 4.77220 4.86566 4.89012 4.93718 5.00061 5.07893 5.10223 5.20546 5.24321 5.25888 5.31666 5.44183 5.80198 6.30939 6.51712 6.57760 7.00080 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031406 B = 0.001850 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.324297 B =15134.906445 C =15655.141206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.159 0.841 7 C -0.138 4.138 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.710 5.710 12 C 0.570 3.430 13 O -0.569 6.569 14 C -0.200 4.200 15 C -0.015 4.015 16 C -0.165 4.165 17 C 0.217 3.783 18 C -0.005 4.005 19 C -0.143 4.143 20 C -0.191 4.191 21 C -0.035 4.035 22 C -0.029 4.029 23 O -0.540 6.540 24 Si 0.778 3.222 25 O -0.164 6.164 26 N -0.488 5.488 27 C 0.156 3.844 28 C -0.133 4.133 29 C -0.138 4.138 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.138 0.862 40 H 0.400 0.600 41 H -0.282 1.282 42 H -0.290 1.290 43 H 0.204 0.796 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.087 0.913 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.649 27.409 26.047 45.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.053 4.053 6 H 0.177 0.823 7 C -0.176 4.176 8 C -0.165 4.165 9 C 0.029 3.971 10 H 0.089 0.911 11 N -0.362 5.362 12 C 0.357 3.643 13 O -0.449 6.449 14 C -0.206 4.206 15 C -0.041 4.041 16 C -0.185 4.185 17 C 0.083 3.917 18 C -0.055 4.055 19 C -0.164 4.164 20 C -0.210 4.210 21 C -0.086 4.086 22 C -0.139 4.139 23 O -0.348 6.348 24 Si 0.682 3.318 25 O -0.061 6.061 26 N -0.198 5.198 27 C -0.004 4.004 28 C -0.172 4.172 29 C -0.177 4.177 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.187 0.813 38 H 0.183 0.817 39 H 0.155 0.845 40 H 0.251 0.749 41 H -0.209 1.209 42 H -0.216 1.216 43 H 0.221 0.779 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 24.055 26.199 26.208 44.181 hybrid contribution -0.174 -0.740 -0.128 0.771 sum 23.881 25.459 26.080 43.574 Atomic orbital electron populations 1.42249 1.22131 1.20922 1.16744 0.71680 0.71869 0.72809 1.22870 0.95947 0.96159 0.90299 0.82350 1.21984 1.03924 0.92549 0.99177 1.21756 0.91102 1.02927 1.00680 1.21345 0.95644 0.92689 0.87421 0.91080 1.45893 1.16339 1.55622 1.18366 1.17912 0.82202 0.77935 0.86218 1.90813 1.57554 1.61210 1.35360 1.21157 0.97516 1.05108 0.96780 1.21560 0.94459 0.90128 0.97979 1.22012 1.02230 1.01432 0.92788 1.18531 0.90460 0.93012 0.89668 1.19878 0.86119 1.03671 0.95845 1.22193 1.01833 1.00608 0.91732 1.21866 0.93588 1.03145 1.02362 1.23311 1.00082 1.02223 0.83013 1.24527 0.97687 0.96055 0.95663 1.86555 1.82502 1.34045 1.31680 0.93400 0.75940 0.88435 0.73987 1.83880 1.34527 1.56105 1.31608 1.67540 1.13421 1.09702 1.29111 1.23425 0.99646 0.91813 0.85521 1.21843 1.00707 0.94568 1.00088 1.21932 0.92967 1.03742 0.99027 0.89121 0.86427 0.90890 0.88566 0.74678 0.82773 0.82572 0.81347 0.81696 0.84510 0.74875 1.20889 1.21626 0.77924 0.89517 0.93892 0.89456 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.03 4.15 -168.68 -0.70 47.33 16 2 H 0.45 -36.85 8.96 -89.69 -0.80 -37.66 16 3 H 0.45 -36.34 8.96 -89.70 -0.80 -37.14 16 4 H 0.44 -34.90 8.90 -89.69 -0.80 -35.70 16 5 C 0.05 -3.47 3.03 44.92 0.14 -3.33 16 6 H 0.16 -10.65 8.14 -2.39 -0.02 -10.67 16 7 C -0.14 7.96 5.43 30.60 0.17 8.12 16 8 C -0.13 5.87 5.39 30.59 0.16 6.03 16 9 C 0.13 -5.01 2.45 44.99 0.11 -4.90 16 10 H 0.07 -2.29 7.57 -2.39 -0.02 -2.31 16 11 N -0.71 22.19 5.03 -445.67 -2.24 19.95 16 12 C 0.57 -11.81 7.73 86.71 0.67 -11.13 16 13 O -0.57 7.22 16.07 -4.01 -0.06 7.16 16 14 C -0.20 3.77 5.89 -19.95 -0.12 3.65 16 15 C -0.02 0.24 9.65 22.46 0.22 0.46 16 16 C -0.16 2.28 9.69 22.34 0.22 2.49 16 17 C 0.22 -2.45 6.74 41.75 0.28 -2.17 16 18 C -0.01 0.05 7.03 24.21 0.17 0.22 16 19 C -0.14 1.37 10.58 22.40 0.24 1.61 16 20 C -0.19 1.84 10.77 22.11 0.24 2.08 16 21 C -0.04 0.35 6.22 24.92 0.15 0.51 16 22 C -0.03 0.35 2.98 71.23 0.21 0.56 16 23 O -0.54 6.47 12.87 -148.98 -1.92 4.55 16 24 Si 0.78 -9.62 32.10 68.60 2.20 -7.42 16 25 O -0.16 1.51 8.75 -5.73 -0.05 1.46 16 26 N -0.49 6.76 10.03 -184.08 -1.85 4.92 16 27 C 0.16 -3.26 10.71 85.11 0.91 -2.35 16 28 C -0.13 5.46 5.50 30.58 0.17 5.63 16 29 C -0.14 7.50 5.43 30.58 0.17 7.67 16 30 H 0.09 -5.11 8.14 -2.39 -0.02 -5.13 16 31 H 0.12 -7.15 8.14 -2.39 -0.02 -7.17 16 32 H 0.07 -3.03 8.14 -2.39 -0.02 -3.05 16 33 H 0.10 -4.68 8.14 -2.39 -0.02 -4.70 16 34 H 0.42 -15.13 6.65 -92.71 -0.62 -15.75 16 35 H 0.15 -2.50 7.72 -2.91 -0.02 -2.53 16 36 H 0.16 -2.48 7.88 -2.91 -0.02 -2.50 16 37 H 0.17 -2.03 8.06 -2.91 -0.02 -2.05 16 38 H 0.17 -1.93 8.06 -2.91 -0.02 -1.96 16 39 H 0.14 -1.73 7.96 -2.39 -0.02 -1.75 16 40 H 0.40 -7.97 8.70 -74.06 -0.64 -8.62 16 41 H -0.28 1.70 7.11 99.48 0.71 2.40 16 42 H -0.29 1.79 7.11 99.48 0.71 2.49 16 43 H 0.20 -6.27 6.41 -2.91 -0.02 -6.29 16 44 H 0.09 -3.70 8.14 -2.39 -0.02 -3.72 16 45 H 0.04 -1.30 8.14 -2.39 -0.02 -1.32 16 46 H 0.09 -4.61 8.14 -2.39 -0.02 -4.63 16 47 H 0.11 -5.95 8.14 -2.39 -0.02 -5.97 16 Total: 1.00 -99.55 387.54 -3.09 -102.64 By element: Atomic # 1 Polarization: -193.15 SS G_CDS: -2.58 Total: -195.73 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 4.10 Total: 15.15 kcal Atomic # 7 Polarization: 76.98 SS G_CDS: -4.79 Total: 72.20 kcal Atomic # 8 Polarization: 15.20 SS G_CDS: -2.03 Total: 13.17 kcal Atomic # 14 Polarization: -9.62 SS G_CDS: 2.20 Total: -7.42 kcal Total: -99.55 -3.09 -102.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_17119696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.102 kcal (2) G-P(sol) polarization free energy of solvation -99.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds