Wall clock time and date at job start Mon Mar 8 2021 07:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00896 * 109.47717 * 1 2 4 4 H 1.00897 * 109.47315 * 239.99047 * 1 2 3 5 5 C 1.46900 * 109.46725 * 119.99998 * 1 2 3 6 6 H 1.09011 * 112.84886 * 288.80443 * 5 1 2 7 7 C 1.53785 * 113.61715 * 59.99813 * 5 1 2 8 8 C 1.53781 * 87.07942 * 89.20042 * 7 5 1 9 9 H 1.08999 * 113.61421 * 270.80130 * 8 7 5 10 10 C 1.50703 * 113.61241 * 139.97966 * 8 7 5 11 11 C 1.37988 * 119.93743 * 120.25629 * 10 8 7 12 12 C 1.39377 * 119.87533 * 180.29811 * 11 10 8 13 13 C 1.48376 * 120.12307 * 179.74405 * 12 11 10 14 14 C 1.34566 * 122.77016 * 310.00518 * 13 12 11 15 15 S 1.75848 * 109.54142 * 179.97438 * 14 13 12 16 16 C 1.75808 * 91.15249 * 359.97438 * 15 14 13 17 17 C 1.33055 * 109.92922 * 359.72841 * 16 15 14 18 18 C 1.50702 * 122.54420 * 180.26920 * 17 16 15 19 19 O 1.42905 * 109.46690 * 255.23198 * 18 17 16 20 20 Si 1.86307 * 109.47110 * 15.22620 * 18 17 16 21 21 C 1.39331 * 119.75767 * 359.72495 * 12 11 10 22 22 C 1.38038 * 119.87418 * 359.97438 * 21 12 11 23 23 C 1.38311 * 120.12114 * 0.02562 * 22 21 12 24 24 C 1.53776 * 113.69251 * 157.53611 * 5 1 2 25 25 H 1.09002 * 113.60864 * 334.65117 * 7 5 1 26 26 H 1.09003 * 113.61439 * 203.75043 * 7 5 1 27 27 H 1.08001 * 120.06304 * 359.97438 * 11 10 8 28 28 H 1.08002 * 125.22680 * 359.97438 * 14 13 12 29 29 H 1.07999 * 125.03670 * 180.02562 * 16 15 14 30 30 H 1.08999 * 109.47386 * 135.22848 * 18 17 16 31 31 H 0.96699 * 113.99924 * 179.97438 * 19 18 17 32 32 H 1.48499 * 109.99855 * 178.68639 * 20 18 17 33 33 H 1.48500 * 109.99890 * 300.00386 * 20 18 17 34 34 H 1.07998 * 120.06279 * 180.02562 * 21 12 11 35 35 H 1.07990 * 119.93937 * 179.97438 * 22 21 12 36 36 H 1.08002 * 119.87251 * 179.97438 * 23 22 21 37 37 H 1.09010 * 113.61638 * 156.32045 * 24 5 1 38 38 H 1.08997 * 113.61713 * 25.42327 * 24 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4758 0.8237 5 6 -0.4896 -0.6925 -1.1995 6 1 -0.3253 -0.1225 -2.1140 7 6 -0.0306 -2.1571 -1.2957 8 6 -1.2973 -2.5238 -0.5046 9 1 -1.1556 -2.5124 0.5761 10 6 -1.9718 -3.7797 -0.9933 11 6 -2.1333 -4.8515 -0.1394 12 6 -2.7518 -6.0147 -0.5946 13 6 -2.9232 -7.1726 0.3172 14 6 -1.9137 -7.6796 1.0484 15 16 -2.5006 -9.0369 2.0000 16 6 -4.1200 -8.8425 1.3439 17 6 -4.1448 -7.8202 0.4927 18 6 -5.3974 -7.3981 -0.2311 19 8 -5.3253 -7.8211 -1.5942 20 14 -6.8791 -8.1798 0.5841 21 6 -3.2089 -6.0860 -1.9088 22 6 -3.0477 -5.0054 -2.7525 23 6 -2.4332 -3.8537 -2.2954 24 6 -1.9224 -1.2329 -1.0594 25 1 0.8949 -2.3609 -0.7572 26 1 -0.0237 -2.5465 -2.3138 27 1 -1.7765 -4.7912 0.8782 28 1 -0.8990 -7.3098 1.0504 29 1 -4.9701 -9.4583 1.5981 30 1 -5.4915 -6.3129 -0.1919 31 1 -6.1002 -7.5830 -2.1214 32 1 -8.1233 -7.7462 -0.1008 33 1 -6.7628 -9.6595 0.5372 34 1 -3.6892 -6.9847 -2.2666 35 1 -3.4012 -5.0597 -3.7714 36 1 -2.3087 -3.0108 -2.9591 37 1 -2.4327 -1.3697 -2.0129 38 1 -2.5243 -0.6907 -0.3301 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081482_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:53:04 Heat of formation + Delta-G solvation = 174.692122 kcal Electronic energy + Delta-G solvation = -20507.634516 eV Core-core repulsion = 17528.055200 eV Total energy + Delta-G solvation = -2979.579315 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.15644 -41.78764 -40.12873 -38.22531 -37.88075 -33.67001 -33.23322 -31.26661 -29.11933 -28.27295 -28.02152 -25.61341 -24.35030 -23.70683 -22.42696 -21.81088 -21.42794 -20.13963 -19.70038 -19.36815 -19.30467 -18.80417 -17.93907 -17.60123 -17.31383 -16.65331 -16.29106 -15.99325 -15.87215 -15.64402 -15.52632 -15.18072 -14.84440 -14.70120 -14.55605 -14.35968 -14.24436 -13.90756 -13.68475 -13.45964 -13.09878 -12.94615 -12.61864 -12.44988 -11.25284 -11.14599 -10.84195 -10.47963 -9.96957 -5.68624 -1.22316 -1.06481 -0.72634 -0.61461 -0.15522 0.16579 0.44309 0.52694 0.64387 0.70825 0.83602 0.88422 1.25754 1.34307 1.45115 1.59712 1.66702 2.00963 2.19407 2.40244 2.47210 2.55095 2.58104 2.64581 2.82108 2.86802 2.91626 3.04718 3.09830 3.22201 3.30336 3.48159 3.51801 3.60114 3.68695 3.86959 3.96964 4.12542 4.28866 4.44347 4.47115 4.60294 4.73721 4.97731 5.61445 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.004747 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.316218 B = 5897.069458 C = 6587.063479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 H 0.439 0.561 3 H 0.440 0.560 4 H 0.433 0.567 5 C -0.018 4.018 6 H 0.156 0.844 7 C -0.134 4.134 8 C -0.077 4.077 9 H 0.105 0.895 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.019 4.019 13 C -0.054 4.054 14 C -0.209 4.209 15 S 0.149 5.851 16 C -0.208 4.208 17 C -0.076 4.076 18 C -0.050 4.050 19 O -0.532 6.532 20 Si 0.679 3.321 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.137 4.137 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.167 0.833 29 H 0.173 0.827 30 H 0.074 0.926 31 H 0.381 0.619 32 H -0.257 1.257 33 H -0.251 1.251 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 26.744 1.956 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.268 0.732 3 H 0.269 0.731 4 H 0.262 0.738 5 C -0.123 4.123 6 H 0.173 0.827 7 C -0.171 4.171 8 C -0.095 4.095 9 H 0.123 0.877 10 C -0.097 4.097 11 C -0.115 4.115 12 C -0.022 4.022 13 C -0.066 4.066 14 C -0.345 4.345 15 S 0.416 5.584 16 C -0.344 4.344 17 C -0.088 4.088 18 C -0.163 4.163 19 O -0.340 6.340 20 Si 0.579 3.421 21 C -0.111 4.111 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.174 4.174 25 H 0.113 0.887 26 H 0.145 0.855 27 H 0.140 0.860 28 H 0.184 0.816 29 H 0.190 0.810 30 H 0.092 0.908 31 H 0.230 0.770 32 H -0.181 1.181 33 H -0.175 1.175 34 H 0.170 0.830 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.894 24.791 2.918 28.096 hybrid contribution -0.621 1.183 -1.899 2.322 sum 12.273 25.975 1.019 28.746 Atomic orbital electron populations 1.42236 1.21152 1.20525 1.18061 0.73202 0.73142 0.73822 1.24445 1.01503 0.98401 0.87906 0.82652 1.23665 0.99162 0.88877 1.05410 1.21721 0.94677 0.93182 0.99943 0.87692 1.19067 1.01823 0.94424 0.94340 1.21038 0.98949 0.92296 0.99256 1.18422 0.98424 0.92201 0.93125 1.17511 0.92289 0.97845 0.98978 1.25783 1.03071 1.02172 1.03463 1.84574 1.01114 1.29805 1.42888 1.25554 1.02004 1.02516 1.04277 1.18142 0.94641 0.96925 0.99134 1.24394 1.03182 1.02660 0.86021 1.86525 1.45061 1.82391 1.20067 0.94985 0.75395 0.81519 0.90152 1.22041 0.96552 1.00040 0.92419 1.21204 0.98982 0.93106 1.00173 1.20951 0.99251 0.98296 0.94864 1.23707 0.92100 0.95582 1.05997 0.88688 0.85529 0.85966 0.81593 0.81001 0.90792 0.77020 1.18121 1.17547 0.82982 0.85493 0.86257 0.85384 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 23.17 4.51 -3.97 -0.02 23.15 16 2 H 0.44 -17.05 9.02 -39.29 -0.35 -17.41 16 3 H 0.44 -17.19 9.02 -39.29 -0.35 -17.55 16 4 H 0.43 -16.42 8.01 -39.29 -0.31 -16.74 16 5 C -0.02 0.57 4.96 -66.90 -0.33 0.24 16 6 H 0.16 -4.95 8.14 -51.92 -0.42 -5.37 16 7 C -0.13 3.57 7.34 -25.92 -0.19 3.38 16 8 C -0.08 1.86 3.63 -90.96 -0.33 1.53 16 9 H 0.10 -2.75 7.65 -51.93 -0.40 -3.15 16 10 C -0.10 1.69 5.28 -104.67 -0.55 1.13 16 11 C -0.10 1.39 9.25 -39.25 -0.36 1.03 16 12 C -0.02 0.21 5.18 -104.89 -0.54 -0.33 16 13 C -0.05 0.50 5.36 -106.60 -0.57 -0.07 16 14 C -0.21 2.07 10.85 29.43 0.32 2.39 16 15 S 0.15 -1.33 23.32 -107.50 -2.51 -3.84 16 16 C -0.21 1.74 9.64 28.93 0.28 2.02 16 17 C -0.08 0.65 5.18 -106.00 -0.55 0.10 16 18 C -0.05 0.48 1.91 36.01 0.07 0.55 16 19 O -0.53 4.79 9.69 -35.23 -0.34 4.45 16 20 Si 0.68 -6.27 30.45 -169.99 -5.18 -11.44 16 21 C -0.09 0.97 8.50 -39.25 -0.33 0.64 16 22 C -0.12 1.47 10.03 -39.63 -0.40 1.08 16 23 C -0.12 1.84 8.60 -39.51 -0.34 1.50 16 24 C -0.14 3.67 7.12 -25.92 -0.18 3.48 16 25 H 0.09 -2.62 8.14 -51.93 -0.42 -3.04 16 26 H 0.13 -3.04 7.72 -51.93 -0.40 -3.44 16 27 H 0.12 -1.93 8.05 -52.49 -0.42 -2.36 16 28 H 0.17 -2.00 8.06 -52.49 -0.42 -2.42 16 29 H 0.17 -1.57 5.69 -52.49 -0.30 -1.87 16 30 H 0.07 -0.81 7.77 -51.93 -0.40 -1.22 16 31 H 0.38 -4.71 8.74 45.56 0.40 -4.32 16 32 H -0.26 1.76 7.11 56.52 0.40 2.17 16 33 H -0.25 1.48 6.89 56.52 0.39 1.87 16 34 H 0.15 -1.36 5.22 -52.49 -0.27 -1.64 16 35 H 0.13 -1.68 8.06 -52.49 -0.42 -2.10 16 36 H 0.12 -2.23 6.64 -52.49 -0.35 -2.58 16 37 H 0.13 -3.14 6.30 -51.92 -0.33 -3.46 16 38 H 0.10 -2.66 8.14 -51.93 -0.42 -3.08 16 LS Contribution 315.21 15.07 4.75 4.75 Total: 1.00 -39.83 315.21 -12.14 -51.97 By element: Atomic # 1 Polarization: -82.88 SS G_CDS: -4.82 Total: -87.70 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: -4.02 Total: 18.66 kcal Atomic # 7 Polarization: 23.17 SS G_CDS: -0.02 Total: 23.15 kcal Atomic # 8 Polarization: 4.79 SS G_CDS: -0.34 Total: 4.45 kcal Atomic # 14 Polarization: -6.27 SS G_CDS: -5.18 Total: -11.44 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.51 Total: -3.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -39.83 -12.14 -51.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.660 kcal (2) G-P(sol) polarization free energy of solvation -39.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds