Wall clock time and date at job start Mon Mar 8 2021 07:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00896 * 109.47717 * 1 2 4 4 H 1.00897 * 109.47315 * 239.99047 * 1 2 3 5 5 C 1.46900 * 109.46725 * 119.99998 * 1 2 3 6 6 H 1.09011 * 112.84886 * 288.80443 * 5 1 2 7 7 C 1.53785 * 113.61715 * 59.99813 * 5 1 2 8 8 C 1.53781 * 87.07942 * 89.20042 * 7 5 1 9 9 H 1.08999 * 113.61421 * 270.80130 * 8 7 5 10 10 C 1.50703 * 113.61241 * 139.97966 * 8 7 5 11 11 C 1.37988 * 119.93743 * 120.25629 * 10 8 7 12 12 C 1.39377 * 119.87533 * 180.29811 * 11 10 8 13 13 C 1.48376 * 120.12307 * 179.74405 * 12 11 10 14 14 C 1.34566 * 122.77016 * 310.00518 * 13 12 11 15 15 S 1.75848 * 109.54142 * 179.97438 * 14 13 12 16 16 C 1.75808 * 91.15249 * 359.97438 * 15 14 13 17 17 C 1.33055 * 109.92922 * 359.72841 * 16 15 14 18 18 C 1.50702 * 122.54420 * 180.26920 * 17 16 15 19 19 O 1.42905 * 109.46690 * 255.23198 * 18 17 16 20 20 Si 1.86307 * 109.47110 * 15.22620 * 18 17 16 21 21 C 1.39331 * 119.75767 * 359.72495 * 12 11 10 22 22 C 1.38038 * 119.87418 * 359.97438 * 21 12 11 23 23 C 1.38311 * 120.12114 * 0.02562 * 22 21 12 24 24 C 1.53776 * 113.69251 * 157.53611 * 5 1 2 25 25 H 1.09002 * 113.60864 * 334.65117 * 7 5 1 26 26 H 1.09003 * 113.61439 * 203.75043 * 7 5 1 27 27 H 1.08001 * 120.06304 * 359.97438 * 11 10 8 28 28 H 1.08002 * 125.22680 * 359.97438 * 14 13 12 29 29 H 1.07999 * 125.03670 * 180.02562 * 16 15 14 30 30 H 1.08999 * 109.47386 * 135.22848 * 18 17 16 31 31 H 0.96699 * 113.99924 * 179.97438 * 19 18 17 32 32 H 1.48499 * 109.99855 * 178.68639 * 20 18 17 33 33 H 1.48500 * 109.99890 * 300.00386 * 20 18 17 34 34 H 1.07998 * 120.06279 * 180.02562 * 21 12 11 35 35 H 1.07990 * 119.93937 * 179.97438 * 22 21 12 36 36 H 1.08002 * 119.87251 * 179.97438 * 23 22 21 37 37 H 1.09010 * 113.61638 * 156.32045 * 24 5 1 38 38 H 1.08997 * 113.61713 * 25.42327 * 24 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4758 0.8237 5 6 -0.4896 -0.6925 -1.1995 6 1 -0.3253 -0.1225 -2.1140 7 6 -0.0306 -2.1571 -1.2957 8 6 -1.2973 -2.5238 -0.5046 9 1 -1.1556 -2.5124 0.5761 10 6 -1.9718 -3.7797 -0.9933 11 6 -2.1333 -4.8515 -0.1394 12 6 -2.7518 -6.0147 -0.5946 13 6 -2.9232 -7.1726 0.3172 14 6 -1.9137 -7.6796 1.0484 15 16 -2.5006 -9.0369 2.0000 16 6 -4.1200 -8.8425 1.3439 17 6 -4.1448 -7.8202 0.4927 18 6 -5.3974 -7.3981 -0.2311 19 8 -5.3253 -7.8211 -1.5942 20 14 -6.8791 -8.1798 0.5841 21 6 -3.2089 -6.0860 -1.9088 22 6 -3.0477 -5.0054 -2.7525 23 6 -2.4332 -3.8537 -2.2954 24 6 -1.9224 -1.2329 -1.0594 25 1 0.8949 -2.3609 -0.7572 26 1 -0.0237 -2.5465 -2.3138 27 1 -1.7765 -4.7912 0.8782 28 1 -0.8990 -7.3098 1.0504 29 1 -4.9701 -9.4583 1.5981 30 1 -5.4915 -6.3129 -0.1919 31 1 -6.1002 -7.5830 -2.1214 32 1 -8.1233 -7.7462 -0.1008 33 1 -6.7628 -9.6595 0.5372 34 1 -3.6892 -6.9847 -2.2666 35 1 -3.4012 -5.0597 -3.7714 36 1 -2.3087 -3.0108 -2.9591 37 1 -2.4327 -1.3697 -2.0129 38 1 -2.5243 -0.6907 -0.3301 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:53:03 Heat of formation + Delta-G solvation = 146.518726 kcal Electronic energy + Delta-G solvation = -20508.856206 eV Core-core repulsion = 17528.055200 eV Total energy + Delta-G solvation = -2980.801005 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92472 -40.66834 -38.94571 -37.31065 -35.78141 -32.68933 -31.80685 -30.36951 -27.41104 -26.91287 -26.16301 -24.62713 -22.78151 -22.63847 -20.57644 -19.48758 -19.05621 -18.66245 -18.54334 -18.49056 -17.64358 -16.89186 -16.45515 -16.15268 -16.14571 -15.48762 -15.03491 -14.69160 -14.56067 -14.49771 -14.06249 -14.02673 -13.79170 -13.70217 -13.43980 -12.89573 -12.80672 -12.57855 -12.38082 -12.08354 -11.77016 -11.76045 -11.62334 -11.34408 -10.53129 -10.19762 -9.74821 -9.59844 -9.10672 -5.03776 -0.20893 0.33171 0.45900 0.58420 0.90693 1.20447 1.48598 1.52013 1.60594 1.86664 2.73215 2.92546 3.12010 3.39004 3.52630 3.67389 3.78377 3.83516 3.87918 4.02245 4.04212 4.15856 4.23786 4.26181 4.35601 4.44927 4.46596 4.57785 4.60390 4.65975 4.72805 4.79677 4.86244 4.95459 5.03615 5.08420 5.12697 5.20162 5.27255 5.31203 5.63188 5.64939 5.74377 6.09909 6.47500 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.004747 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.316218 B = 5897.069458 C = 6587.063479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 H 0.452 0.548 3 H 0.454 0.546 4 H 0.441 0.559 5 C 0.030 3.970 6 H 0.167 0.833 7 C -0.141 4.141 8 C -0.091 4.091 9 H 0.133 0.867 10 C -0.079 4.079 11 C -0.106 4.106 12 C -0.044 4.044 13 C -0.061 4.061 14 C -0.205 4.205 15 S 0.133 5.867 16 C -0.226 4.226 17 C -0.086 4.086 18 C -0.047 4.047 19 O -0.546 6.546 20 Si 0.746 3.254 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.144 4.144 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.187 0.813 29 H 0.171 0.829 30 H 0.089 0.911 31 H 0.392 0.608 32 H -0.286 1.286 33 H -0.300 1.300 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.505 30.774 2.795 34.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.010 5.010 2 H 0.284 0.716 3 H 0.286 0.714 4 H 0.271 0.729 5 C -0.076 4.076 6 H 0.184 0.816 7 C -0.179 4.179 8 C -0.109 4.109 9 H 0.151 0.849 10 C -0.079 4.079 11 C -0.124 4.124 12 C -0.046 4.046 13 C -0.073 4.073 14 C -0.341 4.341 15 S 0.401 5.599 16 C -0.362 4.362 17 C -0.099 4.099 18 C -0.160 4.160 19 O -0.357 6.357 20 Si 0.653 3.347 21 C -0.142 4.142 22 C -0.155 4.155 23 C -0.133 4.133 24 C -0.181 4.181 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.156 0.844 28 H 0.204 0.796 29 H 0.188 0.812 30 H 0.107 0.893 31 H 0.243 0.757 32 H -0.212 1.212 33 H -0.228 1.228 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.120 0.880 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.990 28.859 3.770 32.737 hybrid contribution -1.265 -0.056 -2.229 2.564 sum 13.725 28.803 1.541 31.943 Atomic orbital electron populations 1.41966 1.22070 1.20882 1.16038 0.71621 0.71424 0.72888 1.23679 0.97140 0.96234 0.90537 0.81571 1.23548 0.98474 0.92486 1.03401 1.22069 0.96065 0.90785 1.01976 0.84905 1.19751 0.99105 0.96067 0.92980 1.21335 0.98570 0.91959 1.00510 1.18500 1.00383 0.93041 0.92677 1.17761 0.91963 0.98453 0.99166 1.26004 1.03814 1.01377 1.02899 1.84501 1.01032 1.30848 1.43569 1.25636 1.02403 1.03003 1.05112 1.18403 0.95523 0.96989 0.98984 1.24414 1.02508 1.03462 0.85584 1.86527 1.46019 1.82630 1.20511 0.94297 0.73653 0.77725 0.89062 1.21840 0.98819 1.00065 0.93503 1.21326 1.00240 0.94074 0.99900 1.21324 0.97945 0.97785 0.96235 1.23608 0.94951 0.94696 1.04888 0.87305 0.88472 0.84370 0.79599 0.81155 0.89302 0.75671 1.21240 1.22803 0.85664 0.86077 0.83554 0.87964 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 46.74 4.51 -166.48 -0.75 45.99 16 2 H 0.45 -36.35 9.02 -89.69 -0.81 -37.16 16 3 H 0.45 -36.74 9.02 -89.70 -0.81 -37.55 16 4 H 0.44 -34.68 8.01 -89.70 -0.72 -35.40 16 5 C 0.03 -1.97 4.96 45.44 0.23 -1.75 16 6 H 0.17 -10.96 8.14 -2.38 -0.02 -10.98 16 7 C -0.14 7.67 7.34 31.12 0.23 7.90 16 8 C -0.09 4.48 3.63 -11.01 -0.04 4.44 16 9 H 0.13 -7.26 7.65 -2.39 -0.02 -7.28 16 10 C -0.08 2.70 5.28 -19.90 -0.11 2.59 16 11 C -0.11 2.89 9.25 22.48 0.21 3.10 16 12 C -0.04 0.83 5.18 -20.04 -0.10 0.73 16 13 C -0.06 0.96 5.36 -21.15 -0.11 0.85 16 14 C -0.21 3.60 10.85 66.98 0.73 4.32 16 15 S 0.13 -2.01 23.32 -56.49 -1.32 -3.33 16 16 C -0.23 2.97 9.64 66.66 0.64 3.61 16 17 C -0.09 1.18 5.18 -20.75 -0.11 1.07 16 18 C -0.05 0.75 1.91 71.24 0.14 0.88 16 19 O -0.55 7.59 9.69 -148.98 -1.44 6.14 16 20 Si 0.75 -11.21 30.45 68.60 2.09 -9.12 16 21 C -0.12 2.09 8.50 22.49 0.19 2.28 16 22 C -0.14 2.98 10.03 22.24 0.22 3.20 16 23 C -0.12 3.45 8.60 22.31 0.19 3.64 16 24 C -0.14 7.87 7.12 31.12 0.22 8.09 16 25 H 0.11 -6.18 8.14 -2.39 -0.02 -6.20 16 26 H 0.10 -4.59 7.72 -2.39 -0.02 -4.61 16 27 H 0.14 -4.33 8.05 -2.91 -0.02 -4.36 16 28 H 0.19 -4.23 8.06 -2.91 -0.02 -4.25 16 29 H 0.17 -2.40 5.69 -2.91 -0.02 -2.41 16 30 H 0.09 -1.69 7.77 -2.39 -0.02 -1.71 16 31 H 0.39 -8.17 8.74 -74.06 -0.65 -8.82 16 32 H -0.29 2.98 7.11 99.48 0.71 3.69 16 33 H -0.30 2.10 6.89 99.48 0.69 2.79 16 34 H 0.13 -1.57 5.22 -2.91 -0.02 -1.58 16 35 H 0.12 -2.68 8.06 -2.92 -0.02 -2.71 16 36 H 0.15 -5.30 6.64 -2.91 -0.02 -5.32 16 37 H 0.10 -4.98 6.30 -2.38 -0.02 -4.99 16 38 H 0.11 -6.31 8.14 -2.39 -0.02 -6.33 16 Total: 1.00 -89.80 315.21 -0.74 -90.54 By element: Atomic # 1 Polarization: -173.35 SS G_CDS: -1.84 Total: -175.19 kcal Atomic # 6 Polarization: 42.44 SS G_CDS: 2.53 Total: 44.96 kcal Atomic # 7 Polarization: 46.74 SS G_CDS: -0.75 Total: 45.99 kcal Atomic # 8 Polarization: 7.59 SS G_CDS: -1.44 Total: 6.14 kcal Atomic # 14 Polarization: -11.21 SS G_CDS: 2.09 Total: -9.12 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -1.32 Total: -3.33 kcal Total: -89.80 -0.74 -90.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.059 kcal (2) G-P(sol) polarization free energy of solvation -89.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds