Wall clock time and date at job start Mon Mar 8 2021 08:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00902 * 1 3 3 H 1.00900 * 109.46225 * 1 2 4 4 H 1.00901 * 109.47319 * 240.00672 * 1 2 3 5 5 C 1.46894 * 109.47058 * 120.00288 * 1 2 3 6 6 H 1.09002 * 109.47104 * 300.00187 * 5 1 2 7 7 C 1.52997 * 109.47515 * 60.00455 * 5 1 2 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 5 1 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 11 11 N 1.46492 * 109.47204 * 180.02562 * 9 8 7 12 12 C 1.38419 * 119.99895 * 155.00052 * 11 9 8 13 13 N 1.32360 * 119.15287 * 179.72796 * 12 11 9 14 14 C 1.33211 * 120.58541 * 179.76512 * 13 12 11 15 15 C 1.48059 * 120.51960 * 180.25535 * 14 13 12 16 16 C 1.34574 * 122.86916 * 179.97438 * 15 14 13 17 17 S 1.70630 * 110.50739 * 179.89202 * 16 15 14 18 18 C 1.75725 * 91.70573 * 0.31243 * 17 16 15 19 19 C 1.33110 * 109.77858 * 359.82449 * 18 17 16 20 20 C 1.50705 * 123.12843 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47093 * 105.02039 * 20 19 18 22 22 Si 1.86297 * 109.47277 * 345.02086 * 20 19 18 23 23 C 1.39889 * 118.96590 * 0.49921 * 14 13 12 24 24 C 1.38215 * 118.44280 * 359.75572 * 23 14 13 25 25 N 1.32431 * 119.31231 * 359.97438 * 24 23 14 26 26 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 27 27 C 1.52999 * 109.46927 * 180.02562 * 5 1 2 28 28 H 1.09002 * 109.47153 * 59.99762 * 7 5 1 29 29 H 1.09001 * 109.46832 * 299.99953 * 7 5 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 8 7 5 31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00353 * 335.00390 * 11 9 8 33 33 H 1.07998 * 124.74566 * 0.02562 * 16 15 14 34 34 H 1.08006 * 125.11027 * 179.80198 * 18 17 16 35 35 H 1.09004 * 109.47058 * 225.01839 * 20 19 18 36 36 H 0.96703 * 114.00102 * 300.00081 * 21 20 19 37 37 H 1.48491 * 110.00053 * 180.02562 * 22 20 19 38 38 H 1.48508 * 109.99627 * 301.32002 * 22 20 19 39 39 H 1.08004 * 120.77665 * 179.77366 * 23 14 13 40 40 H 1.08011 * 120.34347 * 179.97438 * 24 23 14 41 41 H 1.09002 * 109.47153 * 60.00231 * 26 9 8 42 42 H 1.09001 * 109.47289 * 180.02562 * 26 9 8 43 43 H 1.09000 * 109.47486 * 59.99528 * 27 5 1 44 44 H 1.09002 * 109.46716 * 299.99610 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9514 0.0000 4 1 -0.3364 -0.4755 0.8239 5 6 -0.4896 -0.6925 -1.1994 6 1 -0.1263 -0.1787 -2.0894 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4893 -2.8561 -2.4489 9 6 -2.0193 -2.8560 -2.4495 10 1 -2.3830 -3.3698 -1.5597 11 7 -2.5071 -3.5469 -3.6456 12 6 -3.7622 -4.1308 -3.6442 13 7 -4.1884 -4.7460 -4.7358 14 6 -5.3894 -5.3217 -4.7643 15 6 -5.8624 -6.0144 -5.9843 16 6 -7.0656 -6.6117 -6.0650 17 16 -7.2858 -7.3064 -7.6079 18 6 -5.6969 -6.7709 -8.1337 19 6 -5.0957 -6.1088 -7.1478 20 6 -3.7157 -5.5167 -7.2750 21 8 -3.8173 -4.0986 -7.4190 22 14 -2.8677 -6.2336 -8.7708 23 6 -6.1988 -5.2570 -3.6252 24 6 -5.7146 -4.5996 -2.5100 25 7 -4.5082 -4.0550 -2.5513 26 6 -2.5292 -1.4135 -2.4496 27 6 -2.0196 -0.6920 -1.1996 28 1 -0.3431 -2.6488 -0.3093 29 1 1.1102 -2.1351 -1.1993 30 1 -0.1256 -2.3422 -3.3386 31 1 -0.1264 -3.8839 -2.4486 32 1 -1.9507 -3.5953 -4.4387 33 1 -7.7912 -6.6448 -5.2658 34 1 -5.2719 -6.9521 -9.1099 35 1 -3.1362 -5.7506 -6.3818 36 1 -4.3212 -3.8172 -8.1949 37 1 -1.5056 -5.6582 -8.9071 38 1 -2.7843 -7.7113 -8.6478 39 1 -7.1791 -5.7104 -3.6174 40 1 -6.3139 -4.5309 -1.6140 41 1 -2.1654 -0.8996 -3.3394 42 1 -3.6192 -1.4134 -2.4496 43 1 -2.3826 0.3358 -1.1998 44 1 -2.3832 -1.2056 -0.3096 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_17085550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:04:47 Heat of formation + Delta-G solvation = 148.275012 kcal Electronic energy + Delta-G solvation = -26827.802584 eV Core-core repulsion = 23184.187148 eV Total energy + Delta-G solvation = -3643.615437 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05854 -41.06786 -39.84499 -38.03562 -36.96506 -35.08625 -34.51839 -32.38490 -32.02100 -30.63278 -28.85416 -27.65607 -25.75304 -24.77219 -24.04459 -23.54690 -22.44847 -21.45484 -20.16609 -19.45178 -19.10125 -18.48110 -18.30747 -17.69696 -17.41761 -17.23138 -16.82949 -16.39334 -16.29094 -16.07298 -15.80740 -15.27841 -15.22788 -14.91157 -14.63098 -14.27002 -14.17739 -14.09623 -13.80427 -13.67822 -13.57746 -13.39536 -12.86339 -12.58924 -12.54205 -12.29603 -12.27037 -11.95544 -11.91199 -11.83546 -11.55329 -11.48796 -11.19925 -10.41702 -9.97138 -9.87395 -9.41333 -8.99159 -5.06143 -0.50356 0.26332 0.27087 0.59226 0.90704 1.31358 1.53323 1.54223 1.66440 1.89328 1.91430 3.00519 3.09178 3.13150 3.23011 3.47425 3.58059 3.67339 3.69734 3.74972 3.91515 3.94233 4.00598 4.05775 4.10925 4.21357 4.23380 4.29475 4.33846 4.46005 4.49284 4.54053 4.61406 4.61892 4.69494 4.72560 4.85291 4.89115 4.95799 5.03895 5.06421 5.14440 5.20274 5.24287 5.28488 5.41473 5.91078 6.12654 6.42289 6.85174 7.34301 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.003334 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.340201 B = 8395.727504 C = 9588.514249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.152 0.848 7 C -0.133 4.133 8 C -0.128 4.128 9 C 0.155 3.845 10 H 0.080 0.920 11 N -0.698 5.698 12 C 0.548 3.452 13 N -0.563 5.563 14 C 0.263 3.737 15 C -0.087 4.087 16 C -0.224 4.224 17 S 0.237 5.763 18 C -0.240 4.240 19 C -0.115 4.115 20 C -0.019 4.019 21 O -0.536 6.536 22 Si 0.753 3.247 23 C -0.288 4.288 24 C 0.186 3.814 25 N -0.579 5.579 26 C -0.127 4.127 27 C -0.133 4.133 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.189 0.811 34 H 0.193 0.807 35 H 0.105 0.895 36 H 0.383 0.617 37 H -0.296 1.296 38 H -0.296 1.296 39 H 0.159 0.841 40 H 0.196 0.804 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.105 0.895 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.131 20.435 20.535 32.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.018 5.018 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.274 0.726 5 C -0.054 4.054 6 H 0.170 0.830 7 C -0.171 4.171 8 C -0.167 4.167 9 C 0.051 3.949 10 H 0.098 0.902 11 N -0.335 5.335 12 C 0.191 3.809 13 N -0.285 5.285 14 C 0.114 3.886 15 C -0.102 4.102 16 C -0.363 4.363 17 S 0.506 5.494 18 C -0.375 4.375 19 C -0.127 4.127 20 C -0.133 4.133 21 O -0.342 6.342 22 Si 0.660 3.340 23 C -0.314 4.314 24 C 0.020 3.980 25 N -0.303 5.303 26 C -0.167 4.167 27 C -0.172 4.172 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.206 0.794 34 H 0.210 0.790 35 H 0.123 0.877 36 H 0.231 0.769 37 H -0.223 1.223 38 H -0.223 1.223 39 H 0.177 0.823 40 H 0.213 0.787 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.861 19.544 20.028 32.167 hybrid contribution 0.104 -0.096 0.823 0.835 sum 15.965 19.448 20.852 32.679 Atomic orbital electron populations 1.42213 1.22087 1.20888 1.16614 0.71735 0.71830 0.72630 1.22827 0.96340 0.95982 0.90218 0.83003 1.21933 1.03706 0.92609 0.98825 1.21742 0.92217 1.02271 1.00448 1.21213 0.94443 0.92359 0.86915 0.90166 1.44311 1.12604 1.58509 1.18038 1.19646 0.88353 0.88012 0.84912 1.68041 1.16997 1.15912 1.27557 1.19639 0.88199 0.88783 0.91954 1.17439 0.95010 1.04074 0.93685 1.25536 1.01199 1.04392 1.05195 1.83374 1.13165 1.50536 1.02315 1.25880 1.00198 1.06955 1.04457 1.19477 0.98990 1.01184 0.93002 1.24656 0.95000 0.85440 1.08186 1.86506 1.77235 1.18946 1.51523 0.94439 0.80164 0.76505 0.82935 1.22713 1.04283 1.09002 0.95381 1.23326 0.89772 0.86834 0.98057 1.67916 1.08273 1.26723 1.27396 1.21828 1.00732 0.94807 0.99351 1.21931 0.92549 1.03668 0.99030 0.88507 0.86717 0.90001 0.91757 0.75159 0.79386 0.79005 0.87733 0.76901 1.22347 1.22293 0.82322 0.78678 0.91354 0.93678 0.87642 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 46.60 4.15 -168.69 -0.70 45.90 16 2 H 0.45 -35.85 8.96 -89.69 -0.80 -36.66 16 3 H 0.45 -35.55 8.96 -89.69 -0.80 -36.35 16 4 H 0.44 -34.46 8.90 -89.69 -0.80 -35.26 16 5 C 0.05 -3.25 3.02 44.92 0.14 -3.11 16 6 H 0.15 -9.53 8.14 -2.39 -0.02 -9.55 16 7 C -0.13 7.14 5.43 30.59 0.17 7.30 16 8 C -0.13 5.14 5.39 30.60 0.16 5.30 16 9 C 0.16 -5.03 2.45 44.99 0.11 -4.92 16 10 H 0.08 -2.36 7.50 -2.39 -0.02 -2.38 16 11 N -0.70 15.11 5.22 -330.51 -1.73 13.38 16 12 C 0.55 -7.61 8.40 261.52 2.20 -5.41 16 13 N -0.56 5.59 6.78 -187.06 -1.27 4.33 16 14 C 0.26 -2.70 6.77 41.94 0.28 -2.42 16 15 C -0.09 0.98 5.80 -21.17 -0.12 0.86 16 16 C -0.22 3.34 10.26 66.98 0.69 4.03 16 17 S 0.24 -3.87 23.09 -56.49 -1.30 -5.17 16 18 C -0.24 3.70 9.67 66.67 0.64 4.34 16 19 C -0.11 1.40 5.20 -20.67 -0.11 1.30 16 20 C -0.02 0.24 1.82 71.24 0.13 0.37 16 21 O -0.54 7.01 12.13 -148.98 -1.81 5.20 16 22 Si 0.75 -10.42 30.37 68.60 2.08 -8.34 16 23 C -0.29 4.24 9.58 22.66 0.22 4.46 16 24 C 0.19 -3.15 11.28 84.60 0.95 -2.20 16 25 N -0.58 9.03 9.19 -198.24 -1.82 7.21 16 26 C -0.13 4.65 5.51 30.61 0.17 4.82 16 27 C -0.13 6.90 5.44 30.61 0.17 7.07 16 28 H 0.10 -5.23 8.14 -2.39 -0.02 -5.25 16 29 H 0.11 -6.53 8.14 -2.39 -0.02 -6.55 16 30 H 0.08 -3.27 8.14 -2.39 -0.02 -3.29 16 31 H 0.06 -2.20 8.14 -2.39 -0.02 -2.22 16 32 H 0.41 -8.69 8.72 -92.71 -0.81 -9.50 16 33 H 0.19 -3.66 6.84 -2.91 -0.02 -3.68 16 34 H 0.19 -3.89 5.91 -2.91 -0.02 -3.90 16 35 H 0.11 -0.90 6.45 -2.38 -0.02 -0.92 16 36 H 0.38 -7.60 8.70 -74.06 -0.64 -8.24 16 37 H -0.30 2.14 7.11 99.48 0.71 2.85 16 38 H -0.30 2.20 7.11 99.48 0.71 2.90 16 39 H 0.16 -3.06 6.71 -2.91 -0.02 -3.08 16 40 H 0.20 -4.69 8.06 -2.91 -0.02 -4.71 16 41 H 0.07 -2.40 8.14 -2.39 -0.02 -2.42 16 42 H 0.04 -1.21 8.14 -2.39 -0.02 -1.23 16 43 H 0.11 -5.67 8.14 -2.39 -0.02 -5.69 16 44 H 0.09 -4.93 8.14 -2.39 -0.02 -4.95 16 Total: 1.00 -92.31 360.16 -3.48 -95.79 By element: Atomic # 1 Polarization: -177.35 SS G_CDS: -2.73 Total: -180.08 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 5.80 Total: 21.79 kcal Atomic # 7 Polarization: 76.33 SS G_CDS: -5.52 Total: 70.81 kcal Atomic # 8 Polarization: 7.01 SS G_CDS: -1.81 Total: 5.20 kcal Atomic # 14 Polarization: -10.42 SS G_CDS: 2.08 Total: -8.34 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.30 Total: -5.17 kcal Total: -92.31 -3.48 -95.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17085550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.063 kcal (2) G-P(sol) polarization free energy of solvation -92.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds