Wall clock time and date at job start Mon Mar 8 2021 08:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00898 * 109.47390 * 1 2 4 4 H 1.00906 * 109.46714 * 239.99453 * 1 2 3 5 5 C 1.46898 * 109.47101 * 119.99997 * 1 2 3 6 6 H 1.08999 * 109.47031 * 179.97438 * 5 1 2 7 7 C 1.53003 * 109.47052 * 299.99638 * 5 1 2 8 8 C 1.52998 * 109.47132 * 179.97438 * 7 5 1 9 9 C 1.52998 * 109.47339 * 300.00338 * 8 7 5 10 10 H 1.09004 * 109.47126 * 299.99778 * 9 8 7 11 11 N 1.46504 * 109.47320 * 179.97438 * 9 8 7 12 12 C 1.38008 * 119.99557 * 84.99996 * 11 9 8 13 13 N 1.33105 * 120.03420 * 359.97390 * 12 11 9 14 14 C 1.32183 * 120.13636 * 180.02562 * 13 12 11 15 15 N 1.32101 * 120.20091 * 359.72864 * 14 13 12 16 16 C 1.33319 * 120.06226 * 0.55044 * 15 14 13 17 17 C 1.47899 * 120.06900 * 179.71884 * 16 15 14 18 18 C 1.34669 * 122.88828 * 179.74850 * 17 16 15 19 19 S 1.70633 * 110.49843 * 179.73564 * 18 17 16 20 20 C 1.75727 * 91.71667 * 0.26984 * 19 18 17 21 21 C 1.33062 * 109.80527 * 359.97438 * 20 19 18 22 22 C 1.50698 * 123.12322 * 180.02562 * 21 20 19 23 23 O 1.42907 * 109.46986 * 254.97426 * 22 21 20 24 24 Si 1.86299 * 109.47372 * 14.97234 * 22 21 20 25 25 N 1.32838 * 120.03483 * 180.02562 * 12 11 9 26 26 C 1.53003 * 109.47285 * 59.99756 * 9 8 7 27 27 C 1.52998 * 109.47132 * 300.00371 * 26 9 8 28 28 H 1.09001 * 109.46975 * 299.99932 * 7 5 1 29 29 H 1.09004 * 109.47020 * 60.00340 * 7 5 1 30 30 H 1.08999 * 109.47622 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46831 * 60.00298 * 8 7 5 32 32 H 0.96997 * 120.00241 * 264.99792 * 11 9 8 33 33 H 1.07994 * 119.89631 * 180.02562 * 14 13 12 34 34 H 1.08002 * 124.75305 * 0.02562 * 18 17 16 35 35 H 1.08007 * 125.09490 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.47332 * 134.97740 * 22 21 20 37 37 H 0.96697 * 114.00096 * 60.00204 * 23 22 21 38 38 H 1.48504 * 109.99585 * 58.68205 * 24 22 21 39 39 H 1.48500 * 110.00105 * 179.97438 * 24 22 21 40 40 H 1.09004 * 109.47020 * 59.99958 * 26 9 8 41 41 H 1.09001 * 109.46975 * 180.02562 * 26 9 8 42 42 H 1.08999 * 109.47104 * 180.02562 * 27 26 9 43 43 H 1.09004 * 109.46831 * 299.99702 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4758 0.8239 5 6 -0.4897 -0.6925 -1.1994 6 1 -1.5796 -0.6929 -1.1992 7 6 0.0203 0.0288 -2.4487 8 6 -0.4892 -0.6927 -3.6979 9 6 0.0213 -2.1350 -3.6977 10 1 1.1114 -2.1347 -3.6975 11 7 -0.4670 -2.8262 -4.8936 12 6 0.2258 -2.7210 -6.0825 13 7 1.3374 -1.9914 -6.1435 14 6 2.0023 -1.8888 -7.2813 15 7 1.5704 -2.5138 -8.3620 16 6 0.4549 -3.2422 -8.3113 17 6 -0.0321 -3.9369 -9.5227 18 6 -1.1480 -4.6908 -9.5345 19 16 -1.4175 -5.3348 -11.0915 20 6 0.0287 -4.5595 -11.7203 21 6 0.6281 -3.8708 -10.7523 22 6 1.8980 -3.0875 -10.9641 23 8 2.9957 -3.7934 -10.3818 24 14 2.1973 -2.8714 -12.7901 25 7 -0.2165 -3.3469 -7.1674 26 6 -0.4886 -2.8564 -2.4484 27 6 0.0208 -2.1348 -1.1992 28 1 -0.3431 1.0565 -2.4486 29 1 1.1103 0.0288 -2.4487 30 1 -0.1263 -0.1787 -4.5879 31 1 -1.5792 -0.6931 -3.6981 32 1 -1.2772 -3.3577 -4.8497 33 1 2.9040 -1.2962 -7.3263 34 1 -1.7858 -4.8599 -8.6795 35 1 0.3784 -4.6312 -12.7396 36 1 1.8043 -2.1092 -10.4930 37 1 3.1386 -4.6744 -10.7538 38 1 1.0481 -2.1668 -13.4132 39 1 3.4465 -2.0999 -13.0123 40 1 -1.5786 -2.8568 -2.4486 41 1 -0.1245 -3.8838 -2.4480 42 1 -0.3421 -2.6489 -0.3092 43 1 1.1109 -2.1344 -1.1990 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:10 Heat of formation + Delta-G solvation = 165.136089 kcal Electronic energy + Delta-G solvation = -26572.230760 eV Core-core repulsion = 22863.920564 eV Total energy + Delta-G solvation = -3708.310197 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.69609 -41.14165 -39.95822 -38.32352 -36.97786 -35.74858 -34.85945 -33.05596 -32.04285 -31.33787 -29.17281 -28.02327 -26.16061 -25.31242 -24.11091 -23.76420 -22.81154 -21.53294 -20.56641 -19.84354 -19.11460 -18.75533 -18.38835 -18.19331 -17.48453 -17.28553 -16.85549 -16.72085 -16.57926 -16.03025 -15.60359 -15.38899 -15.25217 -14.99589 -14.85732 -14.37824 -14.24822 -14.14153 -13.90702 -13.82598 -13.64702 -13.44514 -12.93144 -12.77496 -12.58565 -12.38868 -12.28513 -12.24258 -12.10676 -11.66027 -11.60595 -11.43148 -10.72069 -10.68752 -10.17109 -9.93548 -9.70737 -9.41192 -5.01229 -0.69920 0.04540 0.18168 0.53658 0.85505 1.35594 1.45730 1.47619 1.65876 1.66686 1.98932 2.59896 2.89036 2.92387 3.07945 3.22006 3.32894 3.59967 3.68418 3.71560 3.85485 3.91888 3.98061 4.02860 4.08103 4.15540 4.18836 4.32421 4.40904 4.46770 4.53748 4.60350 4.60976 4.67754 4.71494 4.80942 4.94882 4.96375 5.03347 5.04909 5.08092 5.18505 5.19668 5.28613 5.41569 5.55487 5.94678 6.34231 6.91618 7.27336 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002827 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.629131 B = 9900.729853 C =10792.674812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.443 0.557 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.052 3.948 6 H 0.154 0.846 7 C -0.134 4.134 8 C -0.129 4.129 9 C 0.149 3.851 10 H 0.084 0.916 11 N -0.677 5.677 12 C 0.584 3.416 13 N -0.608 5.608 14 C 0.371 3.629 15 N -0.584 5.584 16 C 0.452 3.548 17 C -0.088 4.088 18 C -0.198 4.198 19 S 0.257 5.743 20 C -0.236 4.236 21 C -0.107 4.107 22 C -0.026 4.026 23 O -0.538 6.538 24 Si 0.759 3.241 25 N -0.620 5.620 26 C -0.127 4.127 27 C -0.134 4.134 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.419 0.581 33 H 0.230 0.770 34 H 0.181 0.819 35 H 0.200 0.800 36 H 0.110 0.890 37 H 0.384 0.616 38 H -0.290 1.290 39 H -0.302 1.302 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 10.125 35.065 36.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.273 0.727 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.054 4.054 6 H 0.172 0.828 7 C -0.173 4.173 8 C -0.169 4.169 9 C 0.045 3.955 10 H 0.102 0.898 11 N -0.314 5.314 12 C 0.218 3.782 13 N -0.338 5.338 14 C 0.074 3.926 15 N -0.309 5.309 16 C 0.177 3.823 17 C -0.105 4.105 18 C -0.339 4.339 19 S 0.525 5.475 20 C -0.371 4.371 21 C -0.119 4.119 22 C -0.140 4.140 23 O -0.344 6.344 24 Si 0.666 3.334 25 N -0.350 5.350 26 C -0.165 4.165 27 C -0.172 4.172 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.258 0.742 33 H 0.246 0.754 34 H 0.198 0.802 35 H 0.217 0.783 36 H 0.127 0.873 37 H 0.232 0.768 38 H -0.217 1.217 39 H -0.230 1.230 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.358 10.256 34.148 36.055 hybrid contribution 0.734 1.044 0.805 1.509 sum -4.624 11.300 34.952 37.023 Atomic orbital electron populations 1.42225 1.22030 1.21060 1.16593 0.72651 0.71858 0.71694 1.22849 1.04748 0.93254 0.84545 0.82799 1.21923 1.03497 1.00458 0.91399 1.21834 1.01653 0.94487 0.98899 1.21389 0.99966 0.91715 0.82404 0.89835 1.44412 1.28195 1.53747 1.05072 1.19690 0.86226 0.85052 0.87186 1.68639 1.09941 1.25018 1.30224 1.25771 0.96320 0.88840 0.81691 1.69332 1.15068 1.13885 1.32592 1.21044 0.85042 0.86513 0.89738 1.17027 0.97845 1.04137 0.91444 1.25557 1.01066 1.01935 1.05298 1.83324 1.21744 1.45156 0.97240 1.25887 1.01441 1.05341 1.04463 1.19389 0.99529 1.01142 0.91868 1.24775 0.83401 0.96938 1.08860 1.86543 1.48055 1.33843 1.65942 0.94476 0.76429 0.88237 0.74259 1.68521 1.37117 1.29152 1.00172 1.21747 1.02753 0.99826 0.92214 1.21950 1.03626 0.92694 0.98942 0.87652 0.88687 0.93704 0.90806 0.74234 0.75441 0.80202 0.78349 0.87326 0.76778 1.21677 1.23004 0.89409 0.91344 0.86517 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.55 4.15 -168.68 -0.70 46.85 16 2 H 0.44 -34.97 8.90 -89.70 -0.80 -35.77 16 3 H 0.45 -36.07 8.96 -89.70 -0.80 -36.88 16 4 H 0.45 -36.51 8.96 -89.69 -0.80 -37.32 16 5 C 0.05 -3.33 3.03 44.92 0.14 -3.20 16 6 H 0.15 -10.04 8.14 -2.39 -0.02 -10.06 16 7 C -0.13 7.21 5.43 30.59 0.17 7.38 16 8 C -0.13 5.06 5.51 30.59 0.17 5.23 16 9 C 0.15 -5.29 2.46 44.99 0.11 -5.18 16 10 H 0.08 -2.68 7.54 -2.38 -0.02 -2.69 16 11 N -0.68 17.10 5.21 -330.03 -1.72 15.38 16 12 C 0.58 -8.97 8.45 261.26 2.21 -6.76 16 13 N -0.61 9.57 9.34 -202.58 -1.89 7.67 16 14 C 0.37 -4.97 12.40 180.68 2.24 -2.73 16 15 N -0.58 4.82 6.76 -193.68 -1.31 3.51 16 16 C 0.45 -3.41 7.61 137.05 1.04 -2.37 16 17 C -0.09 0.81 5.80 -21.18 -0.12 0.69 16 18 C -0.20 2.52 10.45 67.00 0.70 3.22 16 19 S 0.26 -4.19 23.09 -56.49 -1.30 -5.49 16 20 C -0.24 3.63 9.67 66.66 0.64 4.28 16 21 C -0.11 1.21 5.20 -20.67 -0.11 1.10 16 22 C -0.03 0.28 1.82 71.24 0.13 0.41 16 23 O -0.54 5.58 12.14 -148.98 -1.81 3.77 16 24 Si 0.76 -9.35 30.36 68.60 2.08 -7.26 16 25 N -0.62 6.32 10.00 -191.72 -1.92 4.40 16 26 C -0.13 5.51 5.39 30.59 0.16 5.68 16 27 C -0.13 7.53 5.43 30.59 0.17 7.70 16 28 H 0.11 -5.83 8.14 -2.39 -0.02 -5.85 16 29 H 0.09 -5.07 8.14 -2.38 -0.02 -5.09 16 30 H 0.04 -1.31 8.14 -2.39 -0.02 -1.33 16 31 H 0.07 -2.86 8.14 -2.38 -0.02 -2.88 16 32 H 0.42 -11.19 8.72 -92.71 -0.81 -11.99 16 33 H 0.23 -4.57 8.06 -2.91 -0.02 -4.60 16 34 H 0.18 -2.61 7.93 -2.91 -0.02 -2.63 16 35 H 0.20 -4.11 5.91 -2.91 -0.02 -4.13 16 36 H 0.11 -0.76 6.41 -2.39 -0.02 -0.78 16 37 H 0.38 -6.88 8.70 -74.06 -0.64 -7.52 16 38 H -0.29 2.03 7.11 99.48 0.71 2.74 16 39 H -0.30 1.26 7.11 99.48 0.71 1.97 16 40 H 0.09 -3.88 8.14 -2.38 -0.02 -3.90 16 41 H 0.07 -2.59 8.14 -2.39 -0.02 -2.61 16 42 H 0.12 -6.92 8.14 -2.39 -0.02 -6.94 16 43 H 0.10 -5.39 8.14 -2.38 -0.02 -5.41 16 Total: 1.00 -95.77 357.28 -3.64 -99.41 By element: Atomic # 1 Polarization: -180.96 SS G_CDS: -2.72 Total: -183.68 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 7.65 Total: 15.44 kcal Atomic # 7 Polarization: 85.35 SS G_CDS: -7.54 Total: 77.81 kcal Atomic # 8 Polarization: 5.58 SS G_CDS: -1.81 Total: 3.77 kcal Atomic # 14 Polarization: -9.35 SS G_CDS: 2.08 Total: -7.26 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.30 Total: -5.49 kcal Total: -95.77 -3.64 -99.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 264.543 kcal (2) G-P(sol) polarization free energy of solvation -95.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds