Wall clock time and date at job start Mon Mar 8 2021 08:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00900 * 109.47445 * 1 2 4 4 H 1.00900 * 109.47359 * 239.99403 * 1 2 3 5 5 C 1.46902 * 109.46505 * 119.99207 * 1 2 3 6 6 H 1.09004 * 109.47543 * 299.99902 * 5 1 2 7 7 C 1.53001 * 109.47112 * 60.00355 * 5 1 2 8 8 C 1.53000 * 109.46913 * 179.97438 * 7 5 1 9 9 C 1.53001 * 109.47292 * 299.99852 * 8 7 5 10 10 H 1.09004 * 109.46826 * 300.00256 * 9 8 7 11 11 N 1.46502 * 109.47025 * 180.02562 * 9 8 7 12 12 C 1.34780 * 119.99680 * 155.00068 * 11 9 8 13 13 O 1.21545 * 120.00177 * 359.97438 * 12 11 9 14 14 C 1.47888 * 119.99705 * 179.97438 * 12 11 9 15 15 C 1.39993 * 120.06262 * 179.97438 * 14 12 11 16 16 C 1.38369 * 118.02434 * 180.02562 * 15 14 12 17 17 C 1.39857 * 118.00972 * 0.02562 * 16 15 14 18 18 C 1.47962 * 120.08276 * 179.97438 * 17 16 15 19 19 C 1.34657 * 122.87770 * 359.70991 * 18 17 16 20 20 S 1.70627 * 110.50020 * 179.85815 * 19 18 17 21 21 C 1.75728 * 91.71331 * 0.33901 * 20 19 18 22 22 C 1.33091 * 109.79601 * 359.80887 * 21 20 19 23 23 C 1.50700 * 123.12268 * 179.97438 * 22 21 20 24 24 O 1.42905 * 109.47054 * 255.03593 * 23 22 21 25 25 Si 1.86299 * 109.47304 * 15.03618 * 23 22 21 26 26 N 1.33164 * 119.84021 * 0.02562 * 17 16 15 27 27 N 1.28354 * 122.10911 * 359.97438 * 26 17 16 28 28 C 1.53001 * 109.47020 * 60.00214 * 9 8 7 29 29 C 1.53000 * 109.46913 * 300.00018 * 28 9 8 30 30 H 1.09000 * 109.46983 * 60.00070 * 7 5 1 31 31 H 1.08992 * 109.47225 * 299.99681 * 7 5 1 32 32 H 1.09005 * 109.46871 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47490 * 60.00220 * 8 7 5 34 34 H 0.96992 * 120.00171 * 334.99544 * 11 9 8 35 35 H 1.08001 * 120.98627 * 0.04872 * 15 14 12 36 36 H 1.08002 * 120.99124 * 179.97438 * 16 15 14 37 37 H 1.08003 * 124.74734 * 0.02562 * 19 18 17 38 38 H 1.08007 * 125.09788 * 179.78279 * 21 20 19 39 39 H 1.09003 * 109.47391 * 135.04063 * 23 22 21 40 40 H 0.96701 * 113.99899 * 60.00381 * 24 23 22 41 41 H 1.48510 * 109.99971 * 180.02562 * 25 23 22 42 42 H 1.48506 * 109.99805 * 301.31805 * 25 23 22 43 43 H 1.08999 * 109.46863 * 60.00183 * 28 9 8 44 44 H 1.09005 * 109.46978 * 180.02562 * 28 9 8 45 45 H 1.09000 * 109.46990 * 299.99621 * 29 28 9 46 46 H 1.09005 * 109.46871 * 180.02562 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4895 -0.6924 -1.1996 6 1 -0.1262 -0.1784 -2.0895 7 6 0.0205 -2.1349 -1.1997 8 6 -0.4899 -2.8561 -2.4488 9 6 -2.0199 -2.8561 -2.4483 10 1 -2.3829 -3.3700 -1.5582 11 7 -2.5086 -3.5473 -3.6441 12 6 -3.7306 -4.1159 -3.6416 13 8 -4.4270 -4.0556 -2.6473 14 6 -4.2241 -4.8131 -4.8489 15 6 -5.4929 -5.4046 -4.8476 16 6 -5.9121 -6.0464 -5.9996 17 6 -5.0422 -6.0653 -7.0945 18 6 -5.4436 -6.7393 -8.3491 19 6 -6.6303 -7.3578 -8.4993 20 16 -6.7644 -8.0212 -10.0656 21 6 -5.1634 -7.4444 -10.5042 22 6 -4.6219 -6.7935 -9.4773 23 6 -3.2493 -6.1732 -9.5271 24 8 -2.3345 -6.9804 -8.7829 25 14 -2.6815 -6.0629 -11.2980 26 7 -3.8514 -5.4762 -7.0050 27 7 -3.4633 -4.8811 -5.9360 28 6 -2.5299 -1.4136 -2.4482 29 6 -2.0195 -0.6924 -1.1991 30 1 -0.3430 -2.6488 -0.3098 31 1 1.1104 -2.1349 -1.1996 32 1 -0.1262 -3.8837 -2.4491 33 1 -0.1268 -2.3424 -3.3389 34 1 -1.9528 -3.5957 -4.4375 35 1 -6.1259 -5.3610 -3.9737 36 1 -6.8817 -6.5193 -6.0513 37 1 -7.3917 -7.4224 -7.7360 38 1 -4.6899 -7.5959 -11.4630 39 1 -3.2865 -5.1734 -9.0945 40 1 -2.2506 -7.8856 -9.1126 41 1 -1.3287 -5.4533 -11.3606 42 1 -2.6569 -7.4164 -11.9087 43 1 -2.1669 -0.8999 -3.3383 44 1 -3.6200 -1.4137 -2.4474 45 1 -2.3827 -1.2062 -0.3091 46 1 -2.3833 0.3352 -1.1988 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:29:55 Heat of formation + Delta-G solvation = 109.420379 kcal Electronic energy + Delta-G solvation = -29758.346570 eV Core-core repulsion = 25666.137938 eV Total energy + Delta-G solvation = -4092.208633 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44557 -41.41160 -40.44003 -39.73996 -37.47320 -37.21173 -34.83350 -34.36588 -33.73163 -32.03922 -31.16485 -29.55872 -27.83587 -26.36697 -25.66513 -24.26251 -23.99844 -23.19558 -21.97704 -21.55138 -20.42738 -19.75675 -19.23093 -18.53437 -18.48628 -18.30299 -17.58175 -17.44565 -17.21775 -16.90170 -16.74817 -16.25616 -16.02177 -15.86309 -15.62607 -15.13663 -15.08170 -14.89669 -14.75285 -14.25838 -14.14553 -14.03561 -13.91464 -13.69624 -13.52926 -13.39376 -13.18625 -12.94516 -12.53488 -12.39279 -12.27974 -12.03266 -11.72229 -11.67645 -11.57329 -11.53939 -11.42963 -11.34254 -10.97518 -10.39675 -10.27922 -9.92588 -9.28439 -4.94542 -1.04391 -0.38680 -0.02120 0.54994 0.86844 1.09212 1.31509 1.53990 1.54778 1.70604 1.83251 1.94424 2.55216 2.64255 3.07487 3.08717 3.23494 3.31832 3.48591 3.53035 3.61087 3.67049 3.72913 3.82457 3.86573 3.92783 3.95369 4.00015 4.08247 4.17990 4.33757 4.36732 4.43714 4.47137 4.53188 4.56701 4.62614 4.66007 4.68035 4.80993 4.85001 4.90397 4.96261 5.03818 5.05484 5.14728 5.16023 5.19933 5.26673 5.38307 6.18090 6.57675 6.84358 7.35798 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.002264 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.723828 B =12363.048185 C =13629.508084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.157 0.843 7 C -0.135 4.135 8 C -0.128 4.128 9 C 0.130 3.870 10 H 0.078 0.922 11 N -0.701 5.701 12 C 0.582 3.418 13 O -0.555 6.555 14 C -0.008 4.008 15 C -0.064 4.064 16 C -0.111 4.111 17 C 0.146 3.854 18 C -0.084 4.084 19 C -0.221 4.221 20 S 0.253 5.747 21 C -0.243 4.243 22 C -0.108 4.108 23 C -0.044 4.044 24 O -0.530 6.530 25 Si 0.750 3.250 26 N -0.235 5.235 27 N -0.216 5.216 28 C -0.132 4.132 29 C -0.136 4.136 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.417 0.583 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.197 0.803 38 H 0.184 0.816 39 H 0.119 0.881 40 H 0.376 0.624 41 H -0.303 1.303 42 H -0.276 1.276 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.557 22.171 24.866 35.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.273 0.727 5 C -0.054 4.054 6 H 0.174 0.826 7 C -0.173 4.173 8 C -0.166 4.166 9 C 0.027 3.973 10 H 0.096 0.904 11 N -0.351 5.351 12 C 0.366 3.634 13 O -0.433 6.433 14 C -0.155 4.155 15 C -0.093 4.093 16 C -0.140 4.140 17 C 0.003 3.997 18 C -0.100 4.100 19 C -0.360 4.360 20 S 0.523 5.477 21 C -0.379 4.379 22 C -0.120 4.120 23 C -0.156 4.156 24 O -0.337 6.337 25 Si 0.655 3.345 26 N -0.079 5.079 27 N -0.063 5.063 28 C -0.172 4.172 29 C -0.174 4.174 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.254 0.746 35 H 0.193 0.807 36 H 0.205 0.795 37 H 0.214 0.786 38 H 0.201 0.799 39 H 0.137 0.863 40 H 0.223 0.777 41 H -0.231 1.231 42 H -0.203 1.203 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.943 21.975 23.641 35.160 hybrid contribution 0.110 -0.981 1.525 1.817 sum 14.054 20.994 25.165 35.659 Atomic orbital electron populations 1.42222 1.22123 1.20905 1.16622 0.71686 0.71810 0.72698 1.22853 0.96131 0.96054 0.90348 0.82592 1.21961 1.03898 0.92613 0.98860 1.21753 0.91342 1.02762 1.00764 1.21450 0.95652 0.92992 0.87191 0.90353 1.45961 1.16226 1.54448 1.18507 1.17506 0.82557 0.78181 0.85199 1.90806 1.57421 1.61087 1.33939 1.22956 0.95049 1.01393 0.96093 1.22552 0.94961 0.91890 0.99887 1.22708 1.02289 0.97719 0.91252 1.21373 0.91348 0.93055 0.93929 1.17175 0.95214 1.04749 0.92832 1.25639 1.01423 1.03828 1.05103 1.83422 1.12013 1.49842 1.02440 1.25892 1.01059 1.06759 1.04188 1.19339 0.98430 1.01320 0.92878 1.24818 0.85576 0.97322 1.07879 1.86673 1.63253 1.27031 1.56707 0.94460 0.82332 0.82382 0.75284 1.73593 1.12937 1.05987 1.15408 1.73173 1.27627 1.09725 0.95757 1.21851 1.00884 0.94244 1.00184 1.21937 0.92786 1.03841 0.98837 0.88681 0.86469 0.91295 0.89255 0.74614 0.80672 0.79484 0.78574 0.79878 0.86322 0.77651 1.23083 1.20255 0.90052 0.93501 0.88971 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 46.94 4.15 -168.67 -0.70 46.24 16 2 H 0.45 -36.12 8.96 -89.69 -0.80 -36.92 16 3 H 0.45 -35.78 8.96 -89.69 -0.80 -36.59 16 4 H 0.44 -34.49 8.90 -89.69 -0.80 -35.29 16 5 C 0.05 -3.28 3.03 44.92 0.14 -3.14 16 6 H 0.16 -10.02 8.14 -2.38 -0.02 -10.04 16 7 C -0.14 7.39 5.43 30.59 0.17 7.56 16 8 C -0.13 5.30 5.39 30.59 0.16 5.47 16 9 C 0.13 -4.36 2.45 44.99 0.11 -4.25 16 10 H 0.08 -2.33 7.58 -2.38 -0.02 -2.34 16 11 N -0.70 16.73 5.07 -445.35 -2.26 14.47 16 12 C 0.58 -9.09 7.77 86.80 0.67 -8.41 16 13 O -0.56 6.14 16.04 -3.86 -0.06 6.08 16 14 C -0.01 0.11 6.83 41.97 0.29 0.39 16 15 C -0.06 0.97 9.71 22.73 0.22 1.20 16 16 C -0.11 1.80 9.59 22.69 0.22 2.02 16 17 C 0.15 -1.66 6.82 41.91 0.29 -1.37 16 18 C -0.08 1.08 5.79 -21.17 -0.12 0.95 16 19 C -0.22 3.82 10.25 67.00 0.69 4.51 16 20 S 0.25 -4.44 23.09 -56.49 -1.30 -5.74 16 21 C -0.24 3.71 9.67 66.67 0.64 4.36 16 22 C -0.11 1.35 5.20 -20.67 -0.11 1.24 16 23 C -0.04 0.48 1.82 71.24 0.13 0.61 16 24 O -0.53 4.31 12.12 -148.98 -1.81 2.51 16 25 Si 0.75 -9.55 30.53 68.60 2.09 -7.45 16 26 N -0.23 1.90 7.78 -48.35 -0.38 1.52 16 27 N -0.22 2.21 10.73 -48.47 -0.52 1.69 16 28 C -0.13 5.01 5.50 30.59 0.17 5.18 16 29 C -0.14 7.11 5.43 30.59 0.17 7.28 16 30 H 0.09 -5.18 8.14 -2.39 -0.02 -5.20 16 31 H 0.12 -6.78 8.14 -2.39 -0.02 -6.80 16 32 H 0.07 -2.47 8.14 -2.38 -0.02 -2.49 16 33 H 0.09 -3.77 8.14 -2.39 -0.02 -3.79 16 34 H 0.42 -10.16 7.95 -92.71 -0.74 -10.90 16 35 H 0.18 -3.18 7.71 -2.91 -0.02 -3.21 16 36 H 0.19 -4.38 6.68 -2.91 -0.02 -4.40 16 37 H 0.20 -4.56 6.81 -2.91 -0.02 -4.58 16 38 H 0.18 -3.24 5.75 -2.91 -0.02 -3.25 16 39 H 0.12 -1.10 6.43 -2.39 -0.02 -1.11 16 40 H 0.38 -5.07 8.70 -74.06 -0.64 -5.71 16 41 H -0.30 1.44 7.11 99.48 0.71 2.15 16 42 H -0.28 2.77 6.86 99.48 0.68 3.46 16 43 H 0.08 -3.11 8.14 -2.39 -0.02 -3.13 16 44 H 0.05 -1.32 8.14 -2.38 -0.02 -1.34 16 45 H 0.09 -4.78 8.14 -2.39 -0.02 -4.80 16 46 H 0.11 -5.96 8.14 -2.38 -0.02 -5.98 16 Total: 1.00 -95.57 381.86 -3.79 -99.36 By element: Atomic # 1 Polarization: -179.58 SS G_CDS: -2.68 Total: -182.27 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 3.83 Total: 23.58 kcal Atomic # 7 Polarization: 67.79 SS G_CDS: -3.85 Total: 63.93 kcal Atomic # 8 Polarization: 10.46 SS G_CDS: -1.87 Total: 8.59 kcal Atomic # 14 Polarization: -9.55 SS G_CDS: 2.09 Total: -7.45 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -1.30 Total: -5.74 kcal Total: -95.57 -3.79 -99.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.783 kcal (2) G-P(sol) polarization free energy of solvation -95.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds