Wall clock time and date at job start Mon Mar 8 2021 08:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21556 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.47850 * 119.99807 * 179.97438 * 12 11 9 15 15 C 1.39511 * 119.97027 * 179.97438 * 14 12 11 16 16 N 1.31935 * 120.01611 * 180.02562 * 15 14 12 17 17 C 1.33079 * 119.96972 * 359.97438 * 16 15 14 18 18 C 1.47908 * 120.02661 * 179.97438 * 17 16 15 19 19 C 1.34695 * 122.88790 * 179.70964 * 18 17 16 20 20 S 1.70625 * 110.49737 * 179.85467 * 19 18 17 21 21 C 1.75722 * 91.72064 * 0.34015 * 20 19 18 22 22 C 1.33089 * 109.80528 * 359.80680 * 21 20 19 23 23 C 1.50695 * 123.12329 * 179.97438 * 22 21 20 24 24 O 1.42893 * 109.47425 * 255.02043 * 23 22 21 25 25 Si 1.86303 * 109.47322 * 15.02071 * 23 22 21 26 26 C 1.40113 * 119.94799 * 359.97438 * 17 16 15 27 27 N 1.31475 * 119.98069 * 359.75188 * 26 17 16 28 28 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 29 29 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 30 30 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 31 31 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 34 34 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 35 35 H 1.07993 * 119.99084 * 0.02562 * 15 14 12 36 36 H 1.08003 * 124.75356 * 359.97438 * 19 18 17 37 37 H 1.08000 * 125.10230 * 179.78105 * 21 20 19 38 38 H 1.09004 * 109.47340 * 135.01778 * 23 22 21 39 39 H 0.96698 * 114.00740 * 179.97438 * 24 23 22 40 40 H 1.48497 * 110.00072 * 178.68160 * 25 23 22 41 41 H 1.48501 * 109.99803 * 300.00092 * 25 23 22 42 42 H 1.08002 * 120.01109 * 180.02562 * 26 17 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 28 9 8 44 44 H 1.09004 * 109.47108 * 179.97438 * 28 9 8 45 45 H 1.09002 * 109.47045 * 60.00157 * 29 5 1 46 46 H 1.09001 * 109.47375 * 300.00082 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2266 -4.2625 -4.8352 14 6 -0.2813 -4.5805 -6.5919 15 6 0.4206 -5.6739 -7.1000 16 7 -0.0176 -6.2967 -8.1774 17 6 -1.1298 -5.8818 -8.7789 18 6 -1.6219 -6.5787 -9.9872 19 6 -2.7426 -6.2115 -10.6379 20 16 -3.0109 -7.2246 -11.9843 21 6 -1.5678 -8.1634 -11.6323 22 6 -0.9674 -7.6780 -10.5482 23 6 0.3004 -8.2605 -9.9786 24 8 -0.0058 -9.0050 -8.7980 25 14 1.0862 -9.3875 -11.2370 26 6 -1.8342 -4.7842 -8.2668 27 7 -1.3987 -4.1684 -7.1900 28 6 -0.4889 -2.8566 -2.4481 29 6 0.0202 -2.1351 -1.1992 30 1 1.1101 0.0286 -2.4487 31 1 -0.3431 1.0562 -2.4487 32 1 -0.1258 -0.1796 -4.5879 33 1 -1.5794 -0.6935 -3.6979 34 1 -1.2767 -2.5233 -5.3325 35 1 1.3229 -6.0106 -6.6112 36 1 -3.3809 -5.3895 -10.3490 37 1 -1.2204 -9.0080 -12.2088 38 1 0.9914 -7.4546 -9.7310 39 1 0.7649 -9.4097 -8.3771 40 1 2.3539 -9.9435 -10.6993 41 1 0.1542 -10.4905 -11.5831 42 1 -2.7372 -4.4468 -8.7540 43 1 -1.5789 -2.8569 -2.4481 44 1 -0.1256 -3.8843 -2.4480 45 1 -0.3430 -2.6488 -0.3091 46 1 1.1102 -2.1351 -1.1993 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081482_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:34:59 Heat of formation + Delta-G solvation = 136.711196 kcal Electronic energy + Delta-G solvation = -29625.533843 eV Core-core repulsion = 25534.508629 eV Total energy + Delta-G solvation = -4091.025214 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.57940 -43.15284 -41.61591 -40.30987 -39.20605 -37.71641 -36.49307 -35.68634 -34.10454 -33.98023 -31.89804 -31.11496 -28.53448 -26.99948 -26.43545 -26.13611 -25.54737 -24.17636 -23.46000 -22.91625 -21.45133 -21.20554 -20.78711 -20.25651 -19.94111 -19.80325 -19.13081 -18.92361 -18.34818 -18.00406 -17.70718 -17.44007 -17.16157 -16.95612 -16.53310 -16.31813 -16.10652 -16.05207 -15.79874 -15.57359 -15.27980 -15.06227 -14.82818 -14.75736 -14.70703 -14.51683 -14.42652 -14.18970 -14.14121 -13.51912 -13.50032 -13.25315 -13.18299 -13.12422 -12.52139 -12.43433 -12.32959 -11.65057 -11.38746 -11.19558 -10.62528 -10.50151 -9.86631 -5.44775 -1.80313 -1.20734 -0.82104 -0.63716 -0.10489 0.22902 0.45947 0.67390 0.67750 0.75444 0.81558 0.85218 1.02586 1.10817 1.47849 1.48378 1.58354 1.66569 1.89747 1.96989 1.97728 2.06906 2.19286 2.21644 2.36152 2.40882 2.44471 2.56628 2.69918 2.82842 2.85015 2.91262 2.98488 3.06766 3.16027 3.17462 3.25720 3.29732 3.53473 3.54027 3.60513 3.64059 3.70656 3.99987 4.11574 4.14852 4.33891 4.52834 4.67718 5.10741 5.30133 5.79825 5.98787 6.03871 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.002083 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.272455 B =13437.775919 C =14429.935673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.437 0.563 4 H 0.437 0.563 5 C 0.024 3.976 6 H 0.144 0.856 7 C -0.137 4.137 8 C -0.127 4.127 9 C 0.140 3.860 10 H 0.097 0.903 11 N -0.713 5.713 12 C 0.588 3.412 13 O -0.524 6.524 14 C -0.003 4.003 15 C 0.128 3.872 16 N -0.419 5.419 17 C 0.188 3.812 18 C -0.067 4.067 19 C -0.228 4.228 20 S 0.235 5.765 21 C -0.233 4.233 22 C -0.050 4.050 23 C -0.039 4.039 24 O -0.525 6.525 25 Si 0.667 3.333 26 C 0.058 3.942 27 N -0.407 5.407 28 C -0.132 4.132 29 C -0.139 4.139 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.183 0.817 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.089 0.911 39 H 0.377 0.623 40 H -0.258 1.258 41 H -0.254 1.254 42 H 0.178 0.822 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 25.682 27.962 37.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.265 0.735 4 H 0.266 0.734 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.176 4.176 8 C -0.166 4.166 9 C 0.035 3.965 10 H 0.115 0.885 11 N -0.365 5.365 12 C 0.373 3.627 13 O -0.398 6.398 14 C -0.143 4.143 15 C -0.034 4.034 16 N -0.132 5.132 17 C 0.046 3.954 18 C -0.083 4.083 19 C -0.367 4.367 20 S 0.505 5.495 21 C -0.369 4.369 22 C -0.061 4.061 23 C -0.152 4.152 24 O -0.331 6.331 25 Si 0.568 3.432 26 C -0.107 4.107 27 N -0.123 5.123 28 C -0.171 4.171 29 C -0.177 4.177 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.200 0.800 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.107 0.893 39 H 0.224 0.776 40 H -0.183 1.183 41 H -0.179 1.179 42 H 0.195 0.805 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.826 24.577 26.679 36.284 hybrid contribution 0.866 0.032 2.399 2.551 sum 0.040 24.609 29.079 38.094 Atomic orbital electron populations 1.42646 1.21343 1.20670 1.18699 0.73741 0.73457 0.73400 1.23592 1.04479 0.95868 0.84069 0.83850 1.22017 1.03337 1.00174 0.92032 1.21766 1.02556 0.94467 0.97771 1.21044 1.00758 0.90372 0.84369 0.88455 1.45751 1.29883 1.31789 1.29084 1.17591 0.82969 0.79775 0.82388 1.90848 1.24068 1.65246 1.59679 1.21894 0.95283 0.98574 0.98542 1.23885 0.98925 0.89729 0.90823 1.68872 1.11406 1.26145 1.06827 1.20675 0.90445 0.91408 0.92840 1.17108 0.96612 0.98482 0.96065 1.25300 1.01747 1.06927 1.02699 1.83434 1.22094 1.20917 1.23078 1.25707 1.01127 1.06518 1.03510 1.18251 0.97609 0.95298 0.94935 1.24355 0.97008 1.00359 0.93460 1.86541 1.36765 1.69936 1.39905 0.95459 0.79336 0.82651 0.85792 1.23719 1.00744 0.93336 0.92909 1.68194 1.10171 1.27038 1.06934 1.21934 1.02175 1.01283 0.91718 1.22037 1.03310 0.90564 1.01793 0.88898 0.88597 0.88689 0.89760 0.74862 0.79989 0.80818 0.80701 0.89313 0.77570 1.18311 1.17878 0.80497 0.90232 0.88951 0.88853 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 23.89 4.15 -4.67 -0.02 23.87 16 2 H 0.43 -16.68 8.90 -39.29 -0.35 -17.03 16 3 H 0.44 -17.13 8.96 -39.29 -0.35 -17.49 16 4 H 0.44 -17.04 8.96 -39.29 -0.35 -17.39 16 5 C 0.02 -0.75 3.03 -67.71 -0.20 -0.95 16 6 H 0.14 -4.55 8.14 -51.93 -0.42 -4.97 16 7 C -0.14 3.83 5.43 -26.73 -0.15 3.68 16 8 C -0.13 2.88 5.39 -26.73 -0.14 2.73 16 9 C 0.14 -2.66 2.45 -67.93 -0.17 -2.82 16 10 H 0.10 -1.70 7.58 -51.93 -0.39 -2.09 16 11 N -0.71 10.55 5.07 -54.75 -0.28 10.28 16 12 C 0.59 -6.14 7.77 -12.32 -0.10 -6.24 16 13 O -0.52 4.20 15.99 5.32 0.09 4.28 16 14 C 0.00 0.03 6.75 -82.84 -0.56 -0.53 16 15 C 0.13 -0.99 10.76 -17.03 -0.18 -1.17 16 16 N -0.42 2.67 6.73 -9.28 -0.06 2.61 16 17 C 0.19 -1.31 6.75 -82.66 -0.56 -1.87 16 18 C -0.07 0.45 5.80 -106.64 -0.62 -0.17 16 19 C -0.23 1.99 10.24 29.48 0.30 2.29 16 20 S 0.24 -1.98 23.09 -107.50 -2.48 -4.46 16 21 C -0.23 1.59 9.67 28.94 0.28 1.87 16 22 C -0.05 0.29 5.24 -105.87 -0.55 -0.26 16 23 C -0.04 0.24 1.81 36.00 0.07 0.30 16 24 O -0.52 2.59 12.10 -35.23 -0.43 2.17 16 25 Si 0.67 -4.37 30.49 -169.99 -5.18 -9.56 16 26 C 0.06 -0.53 10.66 -17.00 -0.18 -0.71 16 27 N -0.41 3.79 9.69 -9.35 -0.09 3.70 16 28 C -0.13 2.74 5.49 -26.76 -0.15 2.59 16 29 C -0.14 3.72 5.43 -26.76 -0.15 3.57 16 30 H 0.09 -2.58 8.14 -51.93 -0.42 -3.01 16 31 H 0.10 -2.76 8.14 -51.93 -0.42 -3.19 16 32 H 0.09 -1.95 8.14 -51.93 -0.42 -2.37 16 33 H 0.08 -1.92 8.14 -51.93 -0.42 -2.34 16 34 H 0.41 -6.39 7.94 -40.82 -0.32 -6.72 16 35 H 0.18 -1.63 7.63 -52.49 -0.40 -2.03 16 36 H 0.17 -2.05 6.77 -52.48 -0.36 -2.41 16 37 H 0.18 -1.36 5.79 -52.49 -0.30 -1.66 16 38 H 0.09 -0.59 6.43 -51.93 -0.33 -0.92 16 39 H 0.38 -3.09 8.74 45.56 0.40 -2.69 16 40 H -0.26 1.08 7.11 56.52 0.40 1.48 16 41 H -0.25 0.95 6.92 56.52 0.39 1.34 16 42 H 0.18 -2.14 6.60 -52.49 -0.35 -2.48 16 43 H 0.08 -1.65 8.14 -51.93 -0.42 -2.07 16 44 H 0.09 -1.55 8.14 -51.93 -0.42 -1.97 16 45 H 0.09 -2.56 8.14 -51.93 -0.42 -2.98 16 46 H 0.09 -2.46 8.14 -51.93 -0.42 -2.88 16 LS Contribution 381.57 15.07 5.75 5.75 Total: 1.00 -43.02 381.57 -11.89 -54.91 By element: Atomic # 1 Polarization: -89.74 SS G_CDS: -6.13 Total: -95.86 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.06 Total: 2.32 kcal Atomic # 7 Polarization: 40.90 SS G_CDS: -0.45 Total: 40.45 kcal Atomic # 8 Polarization: 6.79 SS G_CDS: -0.34 Total: 6.45 kcal Atomic # 14 Polarization: -4.37 SS G_CDS: -5.18 Total: -9.56 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.48 Total: -4.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -43.02 -11.89 -54.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.619 kcal (2) G-P(sol) polarization free energy of solvation -43.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds