Wall clock time and date at job start Mon Mar 8 2021 08:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21556 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.47850 * 119.99807 * 179.97438 * 12 11 9 15 15 C 1.39511 * 119.97027 * 179.97438 * 14 12 11 16 16 N 1.31935 * 120.01611 * 180.02562 * 15 14 12 17 17 C 1.33079 * 119.96972 * 359.97438 * 16 15 14 18 18 C 1.47908 * 120.02661 * 179.97438 * 17 16 15 19 19 C 1.34695 * 122.88790 * 179.70964 * 18 17 16 20 20 S 1.70625 * 110.49737 * 179.85467 * 19 18 17 21 21 C 1.75722 * 91.72064 * 0.34015 * 20 19 18 22 22 C 1.33089 * 109.80528 * 359.80680 * 21 20 19 23 23 C 1.50695 * 123.12329 * 179.97438 * 22 21 20 24 24 O 1.42893 * 109.47425 * 255.02043 * 23 22 21 25 25 Si 1.86303 * 109.47322 * 15.02071 * 23 22 21 26 26 C 1.40113 * 119.94799 * 359.97438 * 17 16 15 27 27 N 1.31475 * 119.98069 * 359.75188 * 26 17 16 28 28 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 29 29 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 30 30 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 31 31 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 34 34 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 35 35 H 1.07993 * 119.99084 * 0.02562 * 15 14 12 36 36 H 1.08003 * 124.75356 * 359.97438 * 19 18 17 37 37 H 1.08000 * 125.10230 * 179.78105 * 21 20 19 38 38 H 1.09004 * 109.47340 * 135.01778 * 23 22 21 39 39 H 0.96698 * 114.00740 * 179.97438 * 24 23 22 40 40 H 1.48497 * 110.00072 * 178.68160 * 25 23 22 41 41 H 1.48501 * 109.99803 * 300.00092 * 25 23 22 42 42 H 1.08002 * 120.01109 * 180.02562 * 26 17 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 28 9 8 44 44 H 1.09004 * 109.47108 * 179.97438 * 28 9 8 45 45 H 1.09002 * 109.47045 * 60.00157 * 29 5 1 46 46 H 1.09001 * 109.47375 * 300.00082 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2266 -4.2625 -4.8352 14 6 -0.2813 -4.5805 -6.5919 15 6 0.4206 -5.6739 -7.1000 16 7 -0.0176 -6.2967 -8.1774 17 6 -1.1298 -5.8818 -8.7789 18 6 -1.6219 -6.5787 -9.9872 19 6 -2.7426 -6.2115 -10.6379 20 16 -3.0109 -7.2246 -11.9843 21 6 -1.5678 -8.1634 -11.6323 22 6 -0.9674 -7.6780 -10.5482 23 6 0.3004 -8.2605 -9.9786 24 8 -0.0058 -9.0050 -8.7980 25 14 1.0862 -9.3875 -11.2370 26 6 -1.8342 -4.7842 -8.2668 27 7 -1.3987 -4.1684 -7.1900 28 6 -0.4889 -2.8566 -2.4481 29 6 0.0202 -2.1351 -1.1992 30 1 1.1101 0.0286 -2.4487 31 1 -0.3431 1.0562 -2.4487 32 1 -0.1258 -0.1796 -4.5879 33 1 -1.5794 -0.6935 -3.6979 34 1 -1.2767 -2.5233 -5.3325 35 1 1.3229 -6.0106 -6.6112 36 1 -3.3809 -5.3895 -10.3490 37 1 -1.2204 -9.0080 -12.2088 38 1 0.9914 -7.4546 -9.7310 39 1 0.7649 -9.4097 -8.3771 40 1 2.3539 -9.9435 -10.6993 41 1 0.1542 -10.4905 -11.5831 42 1 -2.7372 -4.4468 -8.7540 43 1 -1.5789 -2.8569 -2.4481 44 1 -0.1256 -3.8843 -2.4480 45 1 -0.3430 -2.6488 -0.3091 46 1 1.1102 -2.1351 -1.1993 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:34:58 Heat of formation + Delta-G solvation = 101.331121 kcal Electronic energy + Delta-G solvation = -29627.068039 eV Core-core repulsion = 25534.508629 eV Total energy + Delta-G solvation = -4092.559409 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53341 -41.39510 -40.40036 -39.60712 -37.45127 -37.24243 -35.68037 -34.33832 -33.38729 -32.02979 -31.09375 -29.50209 -27.80530 -26.27401 -25.73321 -24.24343 -23.95233 -23.15311 -21.94013 -21.53860 -20.16149 -19.53192 -19.20133 -18.56020 -18.48205 -18.34414 -18.26122 -17.47163 -17.41356 -17.04748 -16.68074 -16.42784 -15.97411 -15.69232 -15.56005 -15.24473 -15.13255 -14.88031 -14.45892 -14.28826 -14.17694 -14.06414 -13.87261 -13.67897 -13.60773 -13.38328 -12.96087 -12.84024 -12.63599 -12.53614 -12.47917 -12.27165 -12.10889 -11.80721 -11.70422 -11.63284 -11.46988 -10.98225 -10.60206 -10.24823 -10.07536 -9.87601 -9.19816 -4.99761 -1.11266 -0.14852 -0.00233 0.55527 0.86384 1.14468 1.28599 1.51851 1.55180 1.72883 1.86373 1.89537 2.65754 2.72335 2.87177 3.09297 3.13870 3.24390 3.51539 3.57025 3.63908 3.69128 3.73872 3.84354 3.87515 3.92747 3.99368 4.09675 4.11616 4.19937 4.28847 4.34687 4.40831 4.48176 4.56759 4.56899 4.62994 4.69339 4.73514 4.85609 4.96972 4.99308 5.04871 5.06673 5.15715 5.17115 5.21391 5.26326 5.39985 5.87047 6.23051 6.49867 6.59676 6.91978 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.002083 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.272455 B =13437.775919 C =14429.935673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.443 0.557 3 H 0.452 0.548 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.157 0.843 7 C -0.136 4.136 8 C -0.125 4.125 9 C 0.130 3.870 10 H 0.076 0.924 11 N -0.699 5.699 12 C 0.581 3.419 13 O -0.559 6.559 14 C -0.005 4.005 15 C 0.110 3.890 16 N -0.438 5.438 17 C 0.169 3.831 18 C -0.089 4.089 19 C -0.216 4.216 20 S 0.260 5.740 21 C -0.251 4.251 22 C -0.070 4.070 23 C -0.043 4.043 24 O -0.543 6.543 25 Si 0.741 3.259 26 C 0.063 3.937 27 N -0.403 5.403 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.182 0.818 36 H 0.206 0.794 37 H 0.177 0.823 38 H 0.090 0.910 39 H 0.386 0.614 40 H -0.292 1.292 41 H -0.292 1.292 42 H 0.210 0.790 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.107 0.893 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 28.900 29.915 41.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.273 0.727 3 H 0.283 0.717 4 H 0.281 0.719 5 C -0.053 4.053 6 H 0.175 0.825 7 C -0.174 4.174 8 C -0.164 4.164 9 C 0.027 3.973 10 H 0.094 0.906 11 N -0.350 5.350 12 C 0.365 3.635 13 O -0.437 6.437 14 C -0.145 4.145 15 C -0.051 4.051 16 N -0.152 5.152 17 C 0.028 3.972 18 C -0.104 4.104 19 C -0.355 4.355 20 S 0.529 5.471 21 C -0.386 4.386 22 C -0.082 4.082 23 C -0.155 4.155 24 O -0.352 6.352 25 Si 0.646 3.354 26 C -0.103 4.103 27 N -0.119 5.119 28 C -0.172 4.172 29 C -0.175 4.175 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.256 0.744 35 H 0.199 0.801 36 H 0.223 0.777 37 H 0.194 0.806 38 H 0.107 0.893 39 H 0.236 0.764 40 H -0.219 1.219 41 H -0.219 1.219 42 H 0.226 0.774 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.125 0.875 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.531 27.866 28.681 40.069 hybrid contribution 1.363 -0.991 1.783 2.454 sum -1.169 26.875 30.464 40.641 Atomic orbital electron populations 1.42229 1.21992 1.21086 1.16619 0.72731 0.71653 0.71858 1.22855 1.04857 0.92647 0.84976 0.82515 1.21973 1.03516 1.00871 0.91057 1.21739 1.02919 0.91730 0.99982 1.21426 0.99740 0.92728 0.83412 0.90595 1.45888 1.29088 1.30182 1.29798 1.17558 0.83014 0.80739 0.82149 1.90818 1.25665 1.66556 1.60656 1.22151 0.95179 0.98231 0.98908 1.23946 0.99466 0.90572 0.91097 1.68779 1.12210 1.26887 1.07360 1.20881 0.90770 0.92370 0.93223 1.17230 0.97589 0.98848 0.96754 1.25670 1.01045 1.07061 1.01720 1.83322 1.20686 1.20210 1.22833 1.25829 1.02181 1.07048 1.03551 1.18424 0.98013 0.96158 0.95585 1.24472 0.97558 1.00402 0.93079 1.86505 1.37907 1.70205 1.40570 0.94661 0.75820 0.80440 0.84436 1.24198 1.01179 0.92347 0.92548 1.68284 1.09825 1.26852 1.06957 1.21838 1.02198 0.99281 0.93876 1.21927 1.03287 0.93429 0.98866 0.88821 0.86328 0.91026 0.89051 0.74437 0.80105 0.77679 0.80615 0.89259 0.76447 1.21917 1.21922 0.77380 0.89991 0.93849 0.87493 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.37 4.15 -168.68 -0.70 46.67 16 2 H 0.44 -34.66 8.90 -89.70 -0.80 -35.46 16 3 H 0.45 -36.49 8.96 -89.69 -0.80 -37.30 16 4 H 0.45 -35.95 8.96 -89.69 -0.80 -36.75 16 5 C 0.05 -3.36 3.03 44.92 0.14 -3.22 16 6 H 0.16 -10.25 8.14 -2.39 -0.02 -10.27 16 7 C -0.14 7.62 5.43 30.60 0.17 7.79 16 8 C -0.13 5.46 5.39 30.59 0.16 5.63 16 9 C 0.13 -4.54 2.45 44.99 0.11 -4.43 16 10 H 0.08 -2.31 7.58 -2.39 -0.02 -2.33 16 11 N -0.70 18.23 5.07 -445.40 -2.26 15.97 16 12 C 0.58 -9.69 7.77 86.79 0.67 -9.01 16 13 O -0.56 6.11 15.99 -3.89 -0.06 6.04 16 14 C 0.00 0.07 6.75 41.78 0.28 0.35 16 15 C 0.11 -1.25 10.76 84.98 0.91 -0.33 16 16 N -0.44 4.08 6.73 -183.29 -1.23 2.85 16 17 C 0.17 -1.99 6.75 41.97 0.28 -1.71 16 18 C -0.09 1.06 5.80 -21.17 -0.12 0.93 16 19 C -0.22 3.75 10.24 67.01 0.69 4.44 16 20 S 0.26 -4.25 23.09 -56.49 -1.30 -5.55 16 21 C -0.25 2.95 9.67 66.66 0.64 3.60 16 22 C -0.07 0.67 5.24 -20.67 -0.11 0.56 16 23 C -0.04 0.39 1.81 71.23 0.13 0.52 16 24 O -0.54 3.56 12.10 -148.98 -1.80 1.76 16 25 Si 0.74 -7.57 30.49 68.60 2.09 -5.48 16 26 C 0.06 -1.06 10.66 85.20 0.91 -0.15 16 27 N -0.40 6.67 9.69 -183.49 -1.78 4.89 16 28 C -0.13 5.11 5.49 30.58 0.17 5.28 16 29 C -0.14 7.22 5.43 30.58 0.17 7.38 16 30 H 0.09 -5.19 8.14 -2.39 -0.02 -5.21 16 31 H 0.12 -7.05 8.14 -2.39 -0.02 -7.07 16 32 H 0.07 -2.76 8.14 -2.39 -0.02 -2.78 16 33 H 0.09 -4.10 8.14 -2.39 -0.02 -4.12 16 34 H 0.42 -11.75 7.94 -92.71 -0.74 -12.49 16 35 H 0.18 -2.30 7.63 -2.91 -0.02 -2.32 16 36 H 0.21 -5.14 6.77 -2.91 -0.02 -5.16 16 37 H 0.18 -2.30 5.79 -2.91 -0.02 -2.32 16 38 H 0.09 -0.87 6.43 -2.38 -0.02 -0.89 16 39 H 0.39 -4.95 8.74 -74.06 -0.65 -5.59 16 40 H -0.29 1.46 7.11 99.48 0.71 2.17 16 41 H -0.29 1.22 6.92 99.48 0.69 1.90 16 42 H 0.21 -5.15 6.60 -2.91 -0.02 -5.17 16 43 H 0.08 -3.22 8.14 -2.39 -0.02 -3.24 16 44 H 0.04 -1.22 8.14 -2.38 -0.02 -1.24 16 45 H 0.11 -5.85 8.14 -2.39 -0.02 -5.87 16 46 H 0.09 -4.70 8.14 -2.39 -0.02 -4.72 16 Total: 1.00 -96.91 381.57 -4.53 -101.44 By element: Atomic # 1 Polarization: -183.53 SS G_CDS: -2.68 Total: -186.21 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 5.20 Total: 17.62 kcal Atomic # 7 Polarization: 76.35 SS G_CDS: -5.97 Total: 70.38 kcal Atomic # 8 Polarization: 9.67 SS G_CDS: -1.86 Total: 7.80 kcal Atomic # 14 Polarization: -7.57 SS G_CDS: 2.09 Total: -5.48 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -1.30 Total: -5.55 kcal Total: -96.91 -4.53 -101.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.769 kcal (2) G-P(sol) polarization free energy of solvation -96.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds