Wall clock time and date at job start Mon Mar 8 2021 08:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00896 * 1 3 3 H 1.00892 * 109.47531 * 1 2 4 4 H 1.00899 * 109.47296 * 239.99482 * 1 2 3 5 5 C 1.46907 * 109.46847 * 120.00129 * 1 2 3 6 6 H 1.08998 * 109.47036 * 300.00042 * 5 1 2 7 7 C 1.53000 * 109.47215 * 59.99798 * 5 1 2 8 8 C 1.52997 * 109.46969 * 179.97438 * 7 5 1 9 9 C 1.53001 * 109.47559 * 299.99964 * 8 7 5 10 10 H 1.09002 * 109.46940 * 300.00171 * 9 8 7 11 11 N 1.46496 * 109.47197 * 180.02562 * 9 8 7 12 12 C 1.34771 * 120.00368 * 155.00468 * 11 9 8 13 13 O 1.21587 * 119.99548 * 359.97438 * 12 11 9 14 14 C 1.47580 * 120.00607 * 179.97438 * 12 11 9 15 15 C 1.40145 * 120.85135 * 179.97438 * 14 12 11 16 16 N 1.31896 * 119.03810 * 179.97438 * 15 14 12 17 17 C 1.32884 * 120.87687 * 359.97438 * 16 15 14 18 18 C 1.47810 * 119.06791 * 179.97438 * 17 16 15 19 19 C 1.34755 * 122.89587 * 0.21036 * 18 17 16 20 20 S 1.70622 * 110.48716 * 180.21734 * 19 18 17 21 21 C 1.75719 * 91.72936 * 359.76672 * 20 19 18 22 22 C 1.33044 * 109.82416 * 359.97438 * 21 20 19 23 23 C 1.50695 * 123.12362 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.46955 * 105.02924 * 23 22 21 25 25 Si 1.86300 * 109.47389 * 345.02833 * 23 22 21 26 26 N 1.32883 * 121.87005 * 0.25537 * 17 16 15 27 27 C 1.31904 * 120.87795 * 359.48236 * 26 17 16 28 28 C 1.53000 * 109.46950 * 60.00025 * 9 8 7 29 29 C 1.52997 * 109.46969 * 300.00336 * 28 9 8 30 30 H 1.09002 * 109.47179 * 59.99741 * 7 5 1 31 31 H 1.09000 * 109.47037 * 300.00169 * 7 5 1 32 32 H 1.09004 * 109.46977 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46911 * 60.00470 * 8 7 5 34 34 H 0.97004 * 119.99553 * 334.99960 * 11 9 8 35 35 H 1.08001 * 120.47981 * 359.97438 * 15 14 12 36 36 H 1.08002 * 124.75220 * 359.97438 * 19 18 17 37 37 H 1.08003 * 125.09294 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47545 * 225.02467 * 23 22 21 39 39 H 0.96700 * 113.99995 * 299.99800 * 24 23 22 40 40 H 1.48501 * 109.99832 * 58.67561 * 25 23 22 41 41 H 1.48498 * 109.99998 * 179.97438 * 25 23 22 42 42 H 1.07991 * 120.48576 * 180.25625 * 27 26 17 43 43 H 1.08998 * 109.46920 * 59.99861 * 28 9 8 44 44 H 1.08995 * 109.47478 * 179.97438 * 28 9 8 45 45 H 1.08998 * 109.46911 * 299.99530 * 29 28 9 46 46 H 1.09004 * 109.46977 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4896 -0.6926 -1.1995 6 1 -0.1263 -0.1787 -2.0894 7 6 0.0204 -2.1350 -1.1995 8 6 -0.4900 -2.8564 -2.4484 9 6 -2.0200 -2.8566 -2.4479 10 1 -2.3830 -3.3703 -1.5577 11 7 -2.5087 -3.5479 -3.6434 12 6 -3.7307 -4.1164 -3.6410 13 8 -4.4272 -4.0560 -2.6463 14 6 -4.2232 -4.8124 -4.8456 15 6 -5.4907 -5.4102 -4.8624 16 7 -5.8953 -6.0225 -5.9583 17 6 -5.1191 -6.0760 -7.0356 18 6 -5.6124 -6.7730 -8.2421 19 6 -6.8243 -7.3590 -8.3048 20 16 -7.0644 -8.0720 -9.8362 21 6 -5.4809 -7.5469 -10.3880 22 6 -4.8642 -6.8771 -9.4179 23 6 -3.4843 -6.2911 -9.5703 24 8 -3.5831 -4.8743 -9.7276 25 14 -2.6595 -7.0264 -11.0703 26 7 -3.9099 -5.5254 -7.0573 27 6 -3.4361 -4.8909 -6.0025 28 6 -2.5301 -1.4141 -2.4479 29 6 -2.0196 -0.6927 -1.1990 30 1 -0.3429 -2.6489 -0.3095 31 1 1.1104 -2.1350 -1.1994 32 1 -0.1270 -3.8843 -2.4482 33 1 -0.1270 -2.3427 -3.3386 34 1 -1.9528 -3.5963 -4.4369 35 1 -6.1269 -5.3702 -3.9905 36 1 -7.5412 -7.3783 -7.4973 37 1 -5.0697 -7.7391 -11.3680 38 1 -2.8932 -6.5178 -8.6830 39 1 -4.0968 -4.5991 -10.4993 40 1 -3.4721 -6.7516 -12.2826 41 1 -1.2980 -6.4561 -11.2321 42 1 -2.4541 -4.4422 -6.0284 43 1 -2.1671 -0.9004 -3.3380 44 1 -3.6201 -1.4141 -2.4480 45 1 -2.3827 -1.2064 -0.3088 46 1 -2.3826 0.3351 -1.1992 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:43:50 Heat of formation + Delta-G solvation = 103.918115 kcal Electronic energy + Delta-G solvation = -29759.610112 eV Core-core repulsion = 25667.162883 eV Total energy + Delta-G solvation = -4092.447229 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49433 -41.39380 -40.40530 -39.63861 -37.43150 -37.10144 -35.26809 -34.52931 -33.42764 -32.01011 -31.26393 -29.40956 -27.89847 -26.21763 -25.67698 -24.22506 -23.85311 -23.28443 -21.88765 -21.51497 -20.43415 -19.57560 -19.24533 -18.80143 -18.46579 -18.28932 -17.60546 -17.39478 -17.15344 -17.08573 -16.63395 -16.17228 -16.10993 -15.88741 -15.63547 -15.14112 -14.99372 -14.86004 -14.65439 -14.45086 -14.19186 -13.99726 -13.84650 -13.66847 -13.50436 -13.37006 -13.11339 -12.91290 -12.51909 -12.44112 -12.25577 -12.16954 -12.02093 -11.69107 -11.63597 -11.49314 -11.18384 -11.17752 -10.65880 -10.25212 -10.19478 -9.92742 -9.33716 -4.89540 -1.08740 -0.08753 -0.03018 0.51949 0.85252 1.17561 1.35397 1.55965 1.59037 1.78027 1.91089 1.96538 2.60082 2.72489 2.90195 3.10117 3.23290 3.25617 3.48978 3.55410 3.60459 3.70204 3.74908 3.88594 3.91513 3.94077 3.94982 4.06401 4.11154 4.22526 4.36182 4.38824 4.44095 4.48253 4.57017 4.61310 4.62857 4.71155 4.79610 4.87317 4.98327 5.00479 5.06098 5.08537 5.13462 5.18520 5.23126 5.26119 5.41356 5.71126 6.25772 6.59475 6.79225 6.95323 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002233 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.134883 B =12535.556092 C =13763.116783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.052 3.948 6 H 0.158 0.842 7 C -0.137 4.137 8 C -0.126 4.126 9 C 0.134 3.866 10 H 0.073 0.927 11 N -0.709 5.709 12 C 0.579 3.421 13 O -0.566 6.566 14 C -0.261 4.261 15 C 0.201 3.799 16 N -0.538 5.538 17 C 0.394 3.606 18 C -0.085 4.085 19 C -0.204 4.204 20 S 0.252 5.748 21 C -0.243 4.243 22 C -0.099 4.099 23 C -0.037 4.037 24 O -0.528 6.528 25 Si 0.745 3.255 26 N -0.502 5.502 27 C 0.196 3.804 28 C -0.133 4.133 29 C -0.138 4.138 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.414 0.586 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.128 0.872 39 H 0.376 0.624 40 H -0.280 1.280 41 H -0.298 1.298 42 H 0.210 0.790 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.088 0.912 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.472 21.524 25.480 39.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.054 4.054 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.165 4.165 9 C 0.030 3.970 10 H 0.092 0.908 11 N -0.361 5.361 12 C 0.365 3.635 13 O -0.446 6.446 14 C -0.269 4.269 15 C 0.034 3.966 16 N -0.252 5.252 17 C 0.130 3.870 18 C -0.101 4.101 19 C -0.344 4.344 20 S 0.520 5.480 21 C -0.378 4.378 22 C -0.111 4.111 23 C -0.149 4.149 24 O -0.334 6.334 25 Si 0.650 3.350 26 N -0.215 5.215 27 C 0.028 3.972 28 C -0.173 4.173 29 C -0.176 4.176 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.252 0.748 35 H 0.200 0.800 36 H 0.196 0.804 37 H 0.206 0.794 38 H 0.145 0.855 39 H 0.223 0.777 40 H -0.206 1.206 41 H -0.226 1.226 42 H 0.226 0.774 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 20.082 20.280 24.238 37.444 hybrid contribution 0.332 1.973 0.950 2.215 sum 20.414 22.253 25.189 39.324 Atomic orbital electron populations 1.42245 1.22126 1.20911 1.16742 0.71678 0.71895 0.72767 1.22876 0.95944 0.96239 0.90294 0.82437 1.21978 1.03924 0.92465 0.99186 1.21758 0.91050 1.02990 1.00660 1.21355 0.95676 0.92598 0.87379 0.90839 1.45858 1.16237 1.55617 1.18391 1.17639 0.82257 0.77832 0.85779 1.90817 1.57480 1.61162 1.35118 1.21776 0.99241 1.07776 0.98148 1.23624 0.92566 0.85390 0.95059 1.68514 1.36387 1.19603 1.00649 1.21240 0.86091 0.88927 0.90730 1.17067 0.95290 1.05177 0.92531 1.25616 1.00876 1.02993 1.04934 1.83360 1.13411 1.49432 1.01757 1.25879 1.00117 1.07056 1.04769 1.19315 0.99008 1.00707 0.92096 1.24812 0.94679 0.83783 1.11612 1.86608 1.75914 1.20205 1.50675 0.94393 0.76167 0.89917 0.74522 1.68740 1.13469 1.10453 1.28819 1.24057 0.99421 0.88419 0.85351 1.21853 1.00687 0.94663 1.00061 1.21937 0.92972 1.03695 0.99013 0.88994 0.86413 0.90754 0.88694 0.74815 0.80006 0.80436 0.79369 0.85489 0.77657 1.20605 1.22561 0.77373 0.89710 0.93935 0.89321 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.74 4.15 -168.67 -0.70 47.04 16 2 H 0.45 -36.67 8.96 -89.70 -0.80 -37.47 16 3 H 0.45 -36.09 8.96 -89.70 -0.80 -36.89 16 4 H 0.44 -34.79 8.90 -89.69 -0.80 -35.59 16 5 C 0.05 -3.39 3.03 44.91 0.14 -3.25 16 6 H 0.16 -10.48 8.14 -2.39 -0.02 -10.50 16 7 C -0.14 7.87 5.43 30.59 0.17 8.03 16 8 C -0.13 5.81 5.39 30.59 0.16 5.98 16 9 C 0.13 -4.98 2.45 44.99 0.11 -4.87 16 10 H 0.07 -2.36 7.58 -2.39 -0.02 -2.38 16 11 N -0.71 21.65 5.03 -445.67 -2.24 19.41 16 12 C 0.58 -11.51 7.74 86.71 0.67 -10.84 16 13 O -0.57 6.95 16.09 -3.99 -0.06 6.89 16 14 C -0.26 4.43 5.91 -19.88 -0.12 4.31 16 15 C 0.20 -2.33 10.87 85.15 0.93 -1.41 16 16 N -0.54 4.16 9.78 -188.29 -1.84 2.32 16 17 C 0.39 -3.20 7.57 137.21 1.04 -2.16 16 18 C -0.08 0.75 5.80 -21.18 -0.12 0.62 16 19 C -0.20 2.15 10.43 67.02 0.70 2.85 16 20 S 0.25 -3.55 23.09 -56.49 -1.30 -4.85 16 21 C -0.24 3.41 9.67 66.66 0.64 4.05 16 22 C -0.10 1.15 5.20 -20.66 -0.11 1.05 16 23 C -0.04 0.47 1.81 71.23 0.13 0.60 16 24 O -0.53 5.98 12.11 -148.98 -1.80 4.17 16 25 Si 0.74 -10.62 30.53 68.60 2.09 -8.53 16 26 N -0.50 5.99 6.52 -188.28 -1.23 4.76 16 27 C 0.20 -3.72 10.80 85.15 0.92 -2.80 16 28 C -0.13 5.38 5.50 30.59 0.17 5.55 16 29 C -0.14 7.40 5.43 30.59 0.17 7.56 16 30 H 0.09 -5.17 8.14 -2.39 -0.02 -5.19 16 31 H 0.12 -7.12 8.14 -2.39 -0.02 -7.14 16 32 H 0.07 -3.07 8.14 -2.39 -0.02 -3.09 16 33 H 0.09 -4.55 8.14 -2.39 -0.02 -4.57 16 34 H 0.41 -14.68 6.72 -92.71 -0.62 -15.30 16 35 H 0.18 -2.39 7.73 -2.91 -0.02 -2.41 16 36 H 0.18 -1.96 7.89 -2.91 -0.02 -1.98 16 37 H 0.19 -3.28 5.75 -2.91 -0.02 -3.29 16 38 H 0.13 -1.62 6.36 -2.39 -0.02 -1.64 16 39 H 0.38 -5.88 8.70 -74.06 -0.64 -6.52 16 40 H -0.28 3.04 6.86 99.48 0.68 3.72 16 41 H -0.30 2.13 7.11 99.48 0.71 2.84 16 42 H 0.21 -6.06 6.52 -2.92 -0.02 -6.08 16 43 H 0.08 -3.53 8.14 -2.39 -0.02 -3.55 16 44 H 0.04 -1.25 8.14 -2.39 -0.02 -1.27 16 45 H 0.09 -4.65 8.14 -2.39 -0.02 -4.67 16 46 H 0.10 -5.83 8.14 -2.39 -0.02 -5.85 16 Total: 1.00 -98.28 381.67 -4.07 -102.35 By element: Atomic # 1 Polarization: -186.26 SS G_CDS: -2.57 Total: -188.83 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 5.59 Total: 15.28 kcal Atomic # 7 Polarization: 79.54 SS G_CDS: -6.01 Total: 73.53 kcal Atomic # 8 Polarization: 12.93 SS G_CDS: -1.87 Total: 11.06 kcal Atomic # 14 Polarization: -10.62 SS G_CDS: 2.09 Total: -8.53 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.30 Total: -4.85 kcal Total: -98.28 -4.07 -102.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.271 kcal (2) G-P(sol) polarization free energy of solvation -98.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds