Wall clock time and date at job start Mon Mar 8 2021 08:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21585 * 119.99861 * 359.97438 * 12 11 9 14 14 C 1.47583 * 119.99949 * 180.02562 * 12 11 9 15 15 C 1.40270 * 120.44735 * 180.02562 * 14 12 11 16 16 C 1.36931 * 118.51659 * 179.97438 * 15 14 12 17 17 C 1.39620 * 119.34917 * 359.97438 * 16 15 14 18 18 C 1.47959 * 119.57648 * 180.02562 * 17 16 15 19 19 C 1.34649 * 122.87776 * 359.70347 * 18 17 16 20 20 S 1.70633 * 110.50224 * 179.91696 * 19 18 17 21 21 C 1.75726 * 91.71189 * 0.29613 * 20 19 18 22 22 C 1.33090 * 109.79771 * 359.83227 * 21 20 19 23 23 C 1.50701 * 123.12638 * 179.97438 * 22 21 20 24 24 O 1.42897 * 109.47356 * 255.02335 * 23 22 21 25 25 Si 1.86299 * 109.46924 * 15.02502 * 23 22 21 26 26 N 1.32923 * 120.85297 * 359.97438 * 17 16 15 27 27 C 1.31533 * 121.61357 * 359.76421 * 26 17 16 28 28 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 29 29 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 30 30 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 31 31 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 34 34 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 35 35 H 1.07997 * 120.74052 * 359.94729 * 15 14 12 36 36 H 1.08001 * 120.32744 * 179.97438 * 16 15 14 37 37 H 1.08004 * 124.74934 * 0.04228 * 19 18 17 38 38 H 1.07999 * 125.09716 * 179.79138 * 21 20 19 39 39 H 1.09009 * 109.46905 * 135.02163 * 23 22 21 40 40 H 0.96701 * 113.99760 * 60.00048 * 24 23 22 41 41 H 1.48505 * 109.99784 * 179.97438 * 25 23 22 42 42 H 1.48491 * 110.00117 * 301.31561 * 25 23 22 43 43 H 1.08000 * 119.71943 * 180.24235 * 27 26 17 44 44 H 1.08992 * 109.47554 * 59.99639 * 28 9 8 45 45 H 1.09004 * 109.47108 * 179.97438 * 28 9 8 46 46 H 1.09002 * 109.47045 * 60.00157 * 29 5 1 47 47 H 1.09001 * 109.47375 * 300.00082 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2269 -4.2626 -4.8351 14 6 -0.2798 -4.5786 -6.5903 15 6 0.4175 -5.6796 -7.1091 16 6 -0.0735 -6.2957 -8.2291 17 6 -1.2448 -5.8143 -8.8171 18 6 -1.7801 -6.4766 -10.0270 19 6 -1.1828 -7.5358 -10.6054 20 16 -2.0657 -8.0465 -11.9733 21 6 -3.2597 -6.7781 -11.7417 22 6 -2.9451 -6.0530 -10.6709 23 6 -3.7689 -4.8833 -10.1974 24 8 -3.1025 -3.6645 -10.5325 25 14 -5.4387 -4.9253 -11.0225 26 7 -1.8857 -4.7693 -8.3033 27 6 -1.4488 -4.1539 -7.2261 28 6 -0.4889 -2.8566 -2.4481 29 6 0.0202 -2.1351 -1.1992 30 1 1.1101 0.0286 -2.4487 31 1 -0.3431 1.0562 -2.4487 32 1 -0.1258 -0.1796 -4.5879 33 1 -1.5794 -0.6935 -3.6979 34 1 -1.2767 -2.5233 -5.3325 35 1 1.3217 -6.0332 -6.6360 36 1 0.4402 -7.1457 -8.6534 37 1 -0.2733 -7.9986 -10.2517 38 1 -4.1193 -6.6116 -12.3739 39 1 -3.8962 -4.9425 -9.1163 40 1 -2.9553 -3.5446 -11.4807 41 1 -6.2611 -3.7771 -10.5633 42 1 -5.2776 -4.8774 -12.4978 43 1 -1.9960 -3.3101 -6.8325 44 1 -1.5789 -2.8569 -2.4481 45 1 -0.1256 -3.8843 -2.4480 46 1 -0.3430 -2.6488 -0.3091 47 1 1.1102 -2.1351 -1.1993 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081482_17119696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:21 Heat of formation + Delta-G solvation = 88.672100 kcal Electronic energy + Delta-G solvation = -29616.766563 eV Core-core repulsion = 25589.084128 eV Total energy + Delta-G solvation = -4027.682435 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99470 -41.25428 -40.35777 -39.31296 -37.41249 -37.07698 -34.67953 -33.74713 -33.06206 -32.02020 -30.86140 -29.29673 -27.57763 -25.90409 -24.63038 -24.21399 -23.77342 -23.01962 -21.72158 -21.46252 -20.18834 -19.48177 -19.08701 -18.45951 -18.29733 -18.07667 -17.53851 -17.35646 -17.05201 -16.53356 -16.30936 -16.22608 -16.03901 -15.83694 -15.28352 -15.08640 -14.94366 -14.78464 -14.63422 -14.21515 -14.16321 -13.82176 -13.74889 -13.67462 -13.55530 -13.41425 -13.36904 -12.90689 -12.57931 -12.48281 -12.26304 -12.04494 -11.69616 -11.64063 -11.52108 -11.35964 -11.13290 -10.76637 -10.70574 -10.22517 -10.15718 -9.85025 -9.10509 -4.92252 -0.84966 0.04739 0.17205 0.59161 0.92094 1.27025 1.35488 1.56156 1.56656 1.88498 1.95680 1.99177 2.84477 3.05274 3.09750 3.24509 3.46188 3.54596 3.57688 3.63583 3.67386 3.71977 3.84790 3.91476 3.95576 3.96534 4.06146 4.10455 4.17125 4.22439 4.35394 4.36542 4.47614 4.52932 4.57125 4.60910 4.62922 4.70444 4.77938 4.85425 4.92167 4.95752 4.97614 5.05516 5.07482 5.18969 5.21264 5.23081 5.29172 5.42313 5.47903 6.31268 6.60186 6.76530 7.01384 Molecular weight = 361.14amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.002236 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.818981 B =12519.748078 C =13773.417986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.442 0.558 3 H 0.451 0.549 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.159 0.841 7 C -0.137 4.137 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.070 0.930 11 N -0.713 5.713 12 C 0.570 3.430 13 O -0.573 6.573 14 C -0.211 4.211 15 C -0.022 4.022 16 C -0.174 4.174 17 C 0.208 3.792 18 C -0.082 4.082 19 C -0.230 4.230 20 S 0.233 5.767 21 C -0.245 4.245 22 C -0.105 4.105 23 C -0.034 4.034 24 O -0.527 6.527 25 Si 0.740 3.260 26 N -0.475 5.475 27 C 0.146 3.854 28 C -0.132 4.132 29 C -0.138 4.138 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.413 0.587 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.189 0.811 38 H 0.182 0.818 39 H 0.127 0.873 40 H 0.374 0.626 41 H -0.299 1.299 42 H -0.283 1.283 43 H 0.187 0.813 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.107 0.893 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 19.364 32.909 38.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.283 0.717 4 H 0.282 0.718 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.175 4.175 8 C -0.165 4.165 9 C 0.029 3.971 10 H 0.088 0.912 11 N -0.364 5.364 12 C 0.357 3.643 13 O -0.454 6.454 14 C -0.217 4.217 15 C -0.048 4.048 16 C -0.194 4.194 17 C 0.071 3.929 18 C -0.097 4.097 19 C -0.368 4.368 20 S 0.502 5.498 21 C -0.381 4.381 22 C -0.117 4.117 23 C -0.146 4.146 24 O -0.333 6.333 25 Si 0.646 3.354 26 N -0.184 5.184 27 C -0.014 4.014 28 C -0.171 4.171 29 C -0.176 4.176 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.251 0.749 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.206 0.794 38 H 0.199 0.801 39 H 0.145 0.855 40 H 0.222 0.778 41 H -0.227 1.227 42 H -0.210 1.210 43 H 0.204 0.796 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.125 0.875 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.583 18.578 31.711 36.843 hybrid contribution 1.455 1.221 0.249 1.916 sum 4.038 19.799 31.960 37.812 Atomic orbital electron populations 1.42239 1.21972 1.21094 1.16674 0.72781 0.71672 0.71845 1.22863 1.04911 0.92622 0.84896 0.82351 1.21972 1.03393 1.00897 0.91263 1.21756 1.03077 0.91803 0.99857 1.21334 0.99474 0.92643 0.83629 0.91174 1.45912 1.29245 1.30928 1.30328 1.18016 0.82888 0.80383 0.82987 1.90789 1.26254 1.66694 1.61622 1.21061 1.00010 1.00836 0.99764 1.21484 0.98266 0.91881 0.93195 1.21964 0.97245 1.02929 0.97304 1.19763 0.90596 0.90341 0.92228 1.17455 0.97214 0.97952 0.97060 1.25565 1.06785 1.01828 1.02664 1.83375 1.14646 1.28706 1.23051 1.25873 1.06458 1.02295 1.03474 1.19388 0.96880 0.99571 0.95868 1.24738 1.01786 0.81409 1.06685 1.86627 1.79103 1.38478 1.29115 0.94532 0.76331 0.87067 0.77445 1.67981 1.32284 1.07284 1.10815 1.23365 0.91454 0.97198 0.89398 1.21835 1.02352 0.99183 0.93766 1.21929 1.03133 0.93461 0.99057 0.89077 0.86422 0.91088 0.88706 0.74906 0.83572 0.82495 0.79424 0.80114 0.85549 0.77844 1.22720 1.20984 0.79598 0.89623 0.93947 0.87475 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.35 4.15 -168.68 -0.70 46.65 16 2 H 0.44 -34.51 8.90 -89.70 -0.80 -35.31 16 3 H 0.45 -36.42 8.96 -89.69 -0.80 -37.22 16 4 H 0.45 -35.95 8.96 -89.69 -0.80 -36.75 16 5 C 0.05 -3.39 3.03 44.92 0.14 -3.25 16 6 H 0.16 -10.43 8.14 -2.39 -0.02 -10.45 16 7 C -0.14 7.68 5.43 30.60 0.17 7.84 16 8 C -0.13 5.59 5.39 30.59 0.16 5.76 16 9 C 0.13 -4.71 2.45 44.99 0.11 -4.60 16 10 H 0.07 -2.11 7.58 -2.39 -0.02 -2.12 16 11 N -0.71 20.08 5.03 -445.65 -2.24 17.84 16 12 C 0.57 -10.12 7.74 86.71 0.67 -9.45 16 13 O -0.57 5.82 16.07 -3.98 -0.06 5.75 16 14 C -0.21 3.36 5.89 -19.97 -0.12 3.24 16 15 C -0.02 0.30 9.65 22.46 0.22 0.52 16 16 C -0.17 2.40 9.45 22.30 0.21 2.61 16 17 C 0.21 -2.33 6.74 41.89 0.28 -2.04 16 18 C -0.08 0.94 5.79 -21.17 -0.12 0.81 16 19 C -0.23 3.32 10.22 67.00 0.69 4.00 16 20 S 0.23 -3.52 23.09 -56.49 -1.30 -4.82 16 21 C -0.25 3.39 9.67 66.67 0.64 4.03 16 22 C -0.11 1.25 5.20 -20.67 -0.11 1.14 16 23 C -0.03 0.41 1.82 71.24 0.13 0.54 16 24 O -0.53 5.30 12.10 -148.98 -1.80 3.49 16 25 Si 0.74 -9.72 30.53 68.60 2.09 -7.63 16 26 N -0.48 5.67 6.53 -183.84 -1.20 4.47 16 27 C 0.15 -2.53 10.71 85.09 0.91 -1.62 16 28 C -0.13 5.18 5.49 30.58 0.17 5.35 16 29 C -0.14 7.27 5.43 30.58 0.17 7.43 16 30 H 0.09 -5.00 8.14 -2.39 -0.02 -5.02 16 31 H 0.12 -6.97 8.14 -2.39 -0.02 -6.99 16 32 H 0.07 -2.77 8.14 -2.39 -0.02 -2.79 16 33 H 0.09 -4.38 8.14 -2.39 -0.02 -4.39 16 34 H 0.41 -13.47 6.65 -92.71 -0.62 -14.09 16 35 H 0.15 -2.05 7.72 -2.91 -0.02 -2.07 16 36 H 0.16 -2.83 6.56 -2.91 -0.02 -2.85 16 37 H 0.19 -3.55 6.74 -2.91 -0.02 -3.57 16 38 H 0.18 -2.93 5.75 -2.91 -0.02 -2.95 16 39 H 0.13 -1.50 6.41 -2.38 -0.02 -1.51 16 40 H 0.37 -5.35 8.70 -74.06 -0.64 -5.99 16 41 H -0.30 1.77 7.11 99.48 0.71 2.48 16 42 H -0.28 2.67 6.86 99.48 0.68 3.35 16 43 H 0.19 -4.76 6.41 -2.91 -0.02 -4.77 16 44 H 0.09 -3.48 8.14 -2.39 -0.02 -3.50 16 45 H 0.04 -1.21 8.14 -2.38 -0.02 -1.22 16 46 H 0.11 -5.89 8.14 -2.39 -0.02 -5.90 16 47 H 0.09 -4.51 8.14 -2.39 -0.02 -4.53 16 Total: 1.00 -96.65 384.19 -3.49 -100.14 By element: Atomic # 1 Polarization: -185.62 SS G_CDS: -2.58 Total: -188.20 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 4.31 Total: 22.32 kcal Atomic # 7 Polarization: 73.09 SS G_CDS: -4.14 Total: 68.95 kcal Atomic # 8 Polarization: 11.11 SS G_CDS: -1.87 Total: 9.25 kcal Atomic # 14 Polarization: -9.72 SS G_CDS: 2.09 Total: -7.63 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.30 Total: -4.82 kcal Total: -96.65 -3.49 -100.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17119696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.807 kcal (2) G-P(sol) polarization free energy of solvation -96.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds