Wall clock time and date at job start Mon Mar 8 2021 08:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00896 * 109.47514 * 1 2 4 4 H 1.00899 * 109.46598 * 239.99687 * 1 2 3 5 5 C 1.46900 * 109.46687 * 120.00269 * 1 2 3 6 6 H 1.09011 * 112.90488 * 191.24509 * 5 1 2 7 7 C 1.53782 * 113.61905 * 322.49627 * 5 1 2 8 8 C 1.53788 * 87.07931 * 89.12010 * 7 5 1 9 9 H 1.09003 * 113.68459 * 270.87810 * 8 7 5 10 10 C 1.50693 * 113.61451 * 139.98173 * 8 7 5 11 11 C 1.37991 * 119.93601 * 142.49972 * 10 8 7 12 12 C 1.39380 * 119.87611 * 180.02562 * 11 10 8 13 13 C 1.48364 * 120.12457 * 179.97438 * 12 11 10 14 14 C 1.34568 * 122.76808 * 359.97438 * 13 12 11 15 15 S 1.75859 * 109.54298 * 180.02562 * 14 13 12 16 16 C 1.75817 * 91.14793 * 0.02562 * 15 14 13 17 17 C 1.50703 * 125.03337 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47175 * 120.02070 * 17 16 15 19 19 Si 1.86304 * 109.47061 * 0.02562 * 17 16 15 20 20 C 1.33052 * 109.93411 * 359.97438 * 16 15 14 21 21 C 1.39340 * 119.75407 * 0.25573 * 12 11 10 22 22 C 1.38042 * 119.87288 * 359.49165 * 21 12 11 23 23 C 1.38302 * 120.12416 * 0.53099 * 22 21 12 24 24 C 1.53778 * 113.61831 * 59.99855 * 5 1 2 25 25 H 1.08998 * 113.60825 * 334.57372 * 7 5 1 26 26 H 1.08990 * 113.61421 * 203.66406 * 7 5 1 27 27 H 1.08001 * 120.06299 * 359.97438 * 11 10 8 28 28 H 1.08003 * 125.23321 * 359.97438 * 14 13 12 29 29 H 1.08996 * 109.47050 * 240.02315 * 17 16 15 30 30 H 0.96699 * 114.00201 * 300.00094 * 18 17 16 31 31 H 1.48503 * 109.99650 * 58.68069 * 19 17 16 32 32 H 1.48491 * 109.99953 * 179.97438 * 19 17 16 33 33 H 1.07997 * 122.54677 * 180.02562 * 20 16 15 34 34 H 1.07994 * 120.06276 * 179.72415 * 21 12 11 35 35 H 1.07994 * 119.93852 * 180.25264 * 22 21 12 36 36 H 1.07993 * 119.87807 * 179.72113 * 23 22 21 37 37 H 1.08996 * 113.62104 * 156.32937 * 24 5 1 38 38 H 1.09008 * 113.68817 * 25.44162 * 24 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3362 -0.4757 0.8238 5 6 -0.4896 -0.6926 -1.1994 6 1 -1.5595 -0.5589 -1.3595 7 6 0.3590 -0.4264 -2.4540 8 6 1.2115 -1.6369 -2.0381 9 1 2.0404 -1.3825 -1.3775 10 6 1.6310 -2.5060 -3.1955 11 6 2.8854 -3.0809 -3.2058 12 6 3.2723 -3.8841 -4.2771 13 6 4.6200 -4.5044 -4.2941 14 6 5.5150 -4.3292 -3.3046 15 16 6.9872 -5.2149 -3.6793 16 6 6.2988 -5.7893 -5.1918 17 6 7.0033 -6.6850 -6.1779 18 8 6.2589 -7.8940 -6.3395 19 14 8.7088 -7.0859 -5.5445 20 6 5.0638 -5.3160 -5.3367 21 6 2.3909 -4.0976 -5.3350 22 6 1.1366 -3.5217 -5.3117 23 6 0.7581 -2.7253 -4.2463 24 6 -0.0306 -2.1571 -1.2957 25 1 0.8994 0.5196 -2.4229 26 1 -0.1836 -0.5747 -3.3876 27 1 3.5665 -2.9081 -2.3856 28 1 5.3542 -3.7351 -2.4171 29 1 7.0828 -6.1762 -7.1385 30 1 6.1483 -8.4000 -5.5228 31 1 8.6152 -7.7516 -4.2203 32 1 9.4137 -7.9693 -6.5077 33 1 4.4517 -5.5434 -6.1969 34 1 2.6872 -4.7154 -6.1698 35 1 0.4511 -3.6898 -6.1292 36 1 -0.2225 -2.2731 -4.2343 37 1 -0.6797 -2.7785 -1.9126 38 1 0.1954 -2.6096 -0.3300 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:57:42 Heat of formation + Delta-G solvation = 139.841035 kcal Electronic energy + Delta-G solvation = -19842.407578 eV Core-core repulsion = 16861.317006 eV Total energy + Delta-G solvation = -2981.090572 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93790 -40.44959 -39.00548 -37.61740 -35.75885 -32.84456 -31.90335 -30.41054 -27.30024 -26.93746 -26.02511 -24.99654 -22.74947 -22.45914 -20.81961 -19.81961 -19.23843 -18.65362 -18.49535 -17.71309 -17.62959 -16.87451 -16.45206 -16.33756 -16.04007 -15.74749 -15.29346 -14.82962 -14.64326 -14.52876 -14.18040 -13.88414 -13.84202 -13.67210 -13.49937 -12.89591 -12.78392 -12.58121 -12.49297 -12.37363 -11.77175 -11.66779 -11.64081 -11.36054 -10.86672 -10.47312 -9.73879 -9.70589 -8.91255 -5.13956 -0.37647 0.31983 0.40652 0.46081 0.73327 1.16723 1.47940 1.59829 1.73715 1.82810 2.77594 2.94797 3.10679 3.22403 3.45114 3.58527 3.74790 3.80358 3.83018 3.94478 4.04731 4.10443 4.20360 4.24510 4.37565 4.40215 4.48007 4.50189 4.55354 4.59526 4.71706 4.81415 4.89260 4.94845 5.01202 5.04617 5.07022 5.16129 5.21161 5.30036 5.53228 5.60372 5.68930 6.03025 6.30342 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.032710 B = 0.003568 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.811166 B = 7845.414152 C = 8490.310077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 H 0.441 0.559 3 H 0.454 0.546 4 H 0.452 0.548 5 C 0.031 3.969 6 H 0.167 0.833 7 C -0.145 4.145 8 C -0.092 4.092 9 H 0.135 0.865 10 C -0.073 4.073 11 C -0.112 4.112 12 C -0.040 4.040 13 C -0.081 4.081 14 C -0.192 4.192 15 S 0.125 5.875 16 C -0.224 4.224 17 C -0.038 4.038 18 O -0.542 6.542 19 Si 0.717 3.283 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.141 4.141 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.145 0.855 28 H 0.197 0.803 29 H 0.132 0.868 30 H 0.387 0.613 31 H -0.261 1.261 32 H -0.281 1.281 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.211 22.928 21.278 36.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.010 5.010 2 H 0.271 0.729 3 H 0.286 0.714 4 H 0.284 0.716 5 C -0.075 4.075 6 H 0.184 0.816 7 C -0.182 4.182 8 C -0.110 4.110 9 H 0.153 0.847 10 C -0.073 4.073 11 C -0.131 4.131 12 C -0.042 4.042 13 C -0.093 4.093 14 C -0.327 4.327 15 S 0.391 5.609 16 C -0.341 4.341 17 C -0.150 4.150 18 O -0.350 6.350 19 Si 0.620 3.380 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.179 4.179 25 H 0.129 0.871 26 H 0.121 0.879 27 H 0.162 0.838 28 H 0.214 0.786 29 H 0.150 0.850 30 H 0.237 0.763 31 H -0.186 1.186 32 H -0.207 1.207 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.330 22.158 21.454 35.378 hybrid contribution -1.620 -1.284 -1.168 2.374 sum -18.951 20.875 20.286 34.733 Atomic orbital electron populations 1.41968 1.21679 1.21061 1.16257 0.72895 0.71424 0.71624 1.23675 1.03796 0.94550 0.85502 0.81557 1.23615 0.97180 0.99398 0.98024 1.22101 0.99011 0.95068 0.94856 0.84680 1.19797 0.92754 0.98190 0.96572 1.21350 0.97288 0.96877 0.97557 1.18591 0.91409 0.98225 0.95960 1.17935 0.95334 1.00961 0.95065 1.26144 0.95941 1.06395 1.04252 1.84393 1.16944 1.45142 1.14468 1.24707 0.99887 1.08096 1.01385 1.24501 1.03553 0.85078 1.01883 1.86605 1.74841 1.35089 1.38504 0.94486 0.75810 0.89428 0.78320 1.20167 0.95484 0.98042 1.00286 1.21381 0.94824 1.00730 0.98437 1.21341 0.95809 0.97850 0.99877 1.21347 1.00731 0.98248 0.93333 1.23547 0.96169 0.94801 1.03392 0.87144 0.87942 0.83765 0.78617 0.85042 0.76303 1.18600 1.20732 0.84595 0.87199 0.85636 0.83310 0.88428 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 46.98 4.51 -166.48 -0.75 46.23 16 2 H 0.44 -34.88 8.01 -89.69 -0.72 -35.60 16 3 H 0.45 -36.87 9.02 -89.70 -0.81 -37.68 16 4 H 0.45 -36.50 9.02 -89.69 -0.81 -37.31 16 5 C 0.03 -2.03 4.96 45.44 0.23 -1.80 16 6 H 0.17 -11.03 8.14 -2.38 -0.02 -11.05 16 7 C -0.14 7.97 7.12 31.12 0.22 8.19 16 8 C -0.09 4.61 3.63 -11.01 -0.04 4.57 16 9 H 0.14 -7.53 7.65 -2.39 -0.02 -7.55 16 10 C -0.07 2.54 5.28 -19.90 -0.11 2.44 16 11 C -0.11 3.19 9.14 22.49 0.21 3.40 16 12 C -0.04 0.79 5.88 -20.04 -0.12 0.67 16 13 C -0.08 1.39 5.79 -21.15 -0.12 1.26 16 14 C -0.19 3.91 10.51 66.98 0.70 4.62 16 15 S 0.12 -2.14 20.54 -56.49 -1.16 -3.30 16 16 C -0.22 3.15 5.71 24.53 0.14 3.29 16 17 C -0.04 0.50 2.96 71.24 0.21 0.71 16 18 O -0.54 5.33 12.85 -148.98 -1.91 3.42 16 19 Si 0.72 -9.37 30.95 68.60 2.12 -7.25 16 20 C -0.11 1.50 9.36 21.38 0.20 1.70 16 21 C -0.13 2.43 9.50 22.49 0.21 2.65 16 22 C -0.13 2.93 10.03 22.24 0.22 3.15 16 23 C -0.12 3.62 8.61 22.31 0.19 3.81 16 24 C -0.14 7.74 7.34 31.12 0.23 7.97 16 25 H 0.11 -6.36 8.14 -2.39 -0.02 -6.38 16 26 H 0.10 -5.02 6.30 -2.39 -0.02 -5.04 16 27 H 0.14 -4.87 6.61 -2.91 -0.02 -4.89 16 28 H 0.20 -5.46 6.81 -2.91 -0.02 -5.48 16 29 H 0.13 -1.90 7.96 -2.39 -0.02 -1.92 16 30 H 0.39 -5.97 8.70 -74.06 -0.64 -6.61 16 31 H -0.26 2.58 7.11 99.48 0.71 3.29 16 32 H -0.28 1.49 7.11 99.48 0.71 2.19 16 33 H 0.14 -1.76 6.70 -2.91 -0.02 -1.78 16 34 H 0.11 -1.77 6.55 -2.91 -0.02 -1.79 16 35 H 0.13 -2.91 8.06 -2.91 -0.02 -2.93 16 36 H 0.15 -5.48 6.64 -2.91 -0.02 -5.50 16 37 H 0.10 -4.67 7.72 -2.39 -0.02 -4.69 16 38 H 0.11 -6.26 8.14 -2.38 -0.02 -6.28 16 Total: 1.00 -90.13 319.05 -1.14 -91.27 By element: Atomic # 1 Polarization: -175.17 SS G_CDS: -1.82 Total: -176.98 kcal Atomic # 6 Polarization: 44.24 SS G_CDS: 2.38 Total: 46.62 kcal Atomic # 7 Polarization: 46.98 SS G_CDS: -0.75 Total: 46.23 kcal Atomic # 8 Polarization: 5.33 SS G_CDS: -1.91 Total: 3.42 kcal Atomic # 14 Polarization: -9.37 SS G_CDS: 2.12 Total: -7.25 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -1.16 Total: -3.30 kcal Total: -90.13 -1.14 -91.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.109 kcal (2) G-P(sol) polarization free energy of solvation -90.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds