Wall clock time and date at job start Mon Mar 8 2021 09:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00895 * 1 3 3 H 1.00905 * 109.47207 * 1 2 4 4 H 1.00898 * 109.47218 * 239.99483 * 1 2 3 5 5 C 1.46906 * 109.46832 * 119.99801 * 1 2 3 6 6 H 1.09004 * 109.47040 * 180.02562 * 5 1 2 7 7 C 1.53002 * 109.47248 * 299.99910 * 5 1 2 8 8 C 1.52996 * 109.46969 * 180.02562 * 7 5 1 9 9 C 1.52997 * 109.47131 * 299.99938 * 8 7 5 10 10 H 1.09004 * 109.47261 * 300.00306 * 9 8 7 11 11 N 1.46506 * 109.47289 * 180.02562 * 9 8 7 12 12 C 1.38548 * 119.99728 * 84.99643 * 11 9 8 13 13 C 1.39691 * 120.47810 * 359.73198 * 12 11 9 14 14 C 1.38210 * 118.52636 * 179.72930 * 13 12 11 15 15 N 1.32396 * 119.31075 * 0.53595 * 14 13 12 16 16 C 1.32713 * 120.91527 * 359.72774 * 15 14 13 17 17 C 1.48049 * 119.19687 * 180.02562 * 16 15 14 18 18 C 1.34565 * 122.86615 * 179.68502 * 17 16 15 19 19 S 1.70632 * 110.50928 * 179.91737 * 18 17 16 20 20 C 1.75735 * 91.70505 * 0.28749 * 19 18 17 21 21 C 1.50700 * 125.11014 * 179.79673 * 20 19 18 22 22 O 1.42903 * 109.47182 * 245.04471 * 21 20 19 23 23 Si 1.86297 * 109.47341 * 5.04547 * 21 20 19 24 24 C 1.33109 * 109.77745 * 359.83908 * 20 19 18 25 25 N 1.32669 * 121.60336 * 359.97438 * 16 15 14 26 26 C 1.53002 * 109.47143 * 60.00169 * 9 8 7 27 27 C 1.52996 * 109.46969 * 299.99930 * 26 9 8 28 28 H 1.09004 * 109.47059 * 300.00539 * 7 5 1 29 29 H 1.09004 * 109.46930 * 60.00141 * 7 5 1 30 30 H 1.09001 * 109.46997 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47452 * 59.99938 * 8 7 5 32 32 H 0.97000 * 120.00117 * 265.00154 * 11 9 8 33 33 H 1.08005 * 120.73907 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.34248 * 180.25966 * 14 13 12 35 35 H 1.07999 * 124.74518 * 0.02995 * 18 17 16 36 36 H 1.08997 * 109.47096 * 125.05008 * 21 20 19 37 37 H 0.96703 * 113.99956 * 60.00004 * 22 21 20 38 38 H 1.48496 * 110.00151 * 179.97438 * 23 21 20 39 39 H 1.48506 * 110.00111 * 301.31952 * 23 21 20 40 40 H 1.07995 * 123.13066 * 180.02562 * 24 20 19 41 41 H 1.09004 * 109.46930 * 59.99935 * 26 9 8 42 42 H 1.09004 * 109.47059 * 179.97438 * 26 9 8 43 43 H 1.09001 * 109.46997 * 179.97438 * 27 26 9 44 44 H 1.08992 * 109.47534 * 299.99582 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4896 -0.6925 -1.1995 6 1 -1.5797 -0.6921 -1.1998 7 6 0.0204 0.0288 -2.4488 8 6 -0.4901 -0.6921 -3.6980 9 6 0.0194 -2.1347 -3.6983 10 1 1.1095 -2.1351 -3.6985 11 7 -0.4688 -2.8249 -4.8948 12 6 0.2272 -2.7190 -6.0881 13 6 1.3926 -1.9524 -6.1630 14 6 2.0580 -1.8793 -7.3721 15 7 1.5701 -2.5243 -8.4204 16 6 0.4576 -3.2412 -8.3227 17 6 -0.0538 -3.9476 -9.5191 18 6 -1.1699 -4.6991 -9.5020 19 16 -1.4678 -5.3622 -11.0457 20 6 -0.0313 -4.5976 -11.7092 21 6 0.4342 -4.7193 -13.1373 22 8 1.6871 -5.4057 -13.1731 23 14 -0.8258 -5.6751 -14.1220 24 6 0.5842 -3.8956 -10.7605 25 7 -0.2069 -3.3412 -7.1788 26 6 -0.4906 -2.8560 -2.4491 27 6 0.0199 -2.1351 -1.1999 28 1 -0.3429 1.0565 -2.4487 29 1 1.1104 0.0288 -2.4487 30 1 -0.1264 -0.1785 -4.5879 31 1 -1.5800 -0.6917 -3.6978 32 1 -1.2795 -3.3558 -4.8516 33 1 1.7675 -1.4316 -5.2942 34 1 2.9640 -1.2985 -7.4620 35 1 -1.7913 -4.8586 -8.6332 36 1 0.5525 -3.7245 -13.5669 37 1 1.6564 -6.2997 -12.8058 38 1 -0.3787 -5.8015 -15.5324 39 1 -1.0197 -7.0221 -13.5274 40 1 1.4921 -3.3373 -10.9345 41 1 -1.5806 -2.8556 -2.4489 42 1 -0.1279 -3.8839 -2.4495 43 1 -0.3438 -2.6487 -0.3099 44 1 1.1098 -2.1355 -1.2000 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17085348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:00:14 Heat of formation + Delta-G solvation = 134.413031 kcal Electronic energy + Delta-G solvation = -25687.682637 eV Core-core repulsion = 22043.466099 eV Total energy + Delta-G solvation = -3644.216537 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08810 -41.07129 -39.51145 -38.33112 -37.58645 -35.56727 -34.01107 -32.26617 -31.99434 -31.08952 -29.01965 -27.14589 -26.29284 -24.68838 -24.00153 -23.50065 -22.47256 -21.43469 -20.65751 -19.40215 -18.73625 -18.52855 -18.33252 -18.13301 -17.59390 -17.37385 -16.59747 -16.42753 -16.37124 -16.19507 -16.10244 -15.36551 -15.35279 -15.06874 -14.68359 -14.24757 -14.13648 -14.04913 -13.95890 -13.71799 -13.64272 -13.40564 -12.84115 -12.72036 -12.56150 -12.42680 -12.34557 -12.24574 -11.88241 -11.62361 -11.51628 -11.40650 -11.12602 -10.76297 -10.27460 -9.87647 -9.51734 -9.07724 -5.05679 -0.56422 0.16197 0.37235 0.43025 0.72534 1.21658 1.53746 1.55694 1.60229 1.88161 1.90321 2.96678 2.97529 3.10921 3.24839 3.31422 3.38642 3.60319 3.63890 3.71742 3.75676 3.86309 3.94468 4.09469 4.11049 4.13357 4.27013 4.34308 4.35807 4.46495 4.47832 4.52219 4.54532 4.61575 4.62954 4.69133 4.84318 4.94514 4.99963 5.04799 5.08357 5.12721 5.15037 5.22999 5.30188 5.34463 5.77273 6.13910 6.39858 6.51975 7.21148 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.033269 B = 0.002246 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.427785 B =12463.850406 C =12948.708497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.444 0.556 3 H 0.450 0.550 4 H 0.450 0.550 5 C 0.050 3.950 6 H 0.149 0.851 7 C -0.137 4.137 8 C -0.138 4.138 9 C 0.141 3.859 10 H 0.093 0.907 11 N -0.705 5.705 12 C 0.428 3.572 13 C -0.287 4.287 14 C 0.161 3.839 15 N -0.581 5.581 16 C 0.405 3.595 17 C -0.090 4.090 18 C -0.190 4.190 19 S 0.223 5.777 20 C -0.245 4.245 21 C -0.037 4.037 22 O -0.543 6.543 23 Si 0.719 3.281 24 C -0.073 4.073 25 N -0.594 5.594 26 C -0.127 4.127 27 C -0.135 4.135 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.407 0.593 33 H 0.179 0.821 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.133 0.867 37 H 0.387 0.613 38 H -0.278 1.278 39 H -0.255 1.255 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 16.966 41.690 45.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.282 0.718 5 C -0.056 4.056 6 H 0.167 0.833 7 C -0.175 4.175 8 C -0.177 4.177 9 C 0.037 3.963 10 H 0.111 0.889 11 N -0.337 5.337 12 C 0.183 3.817 13 C -0.315 4.315 14 C 0.000 4.000 15 N -0.300 5.300 16 C 0.138 3.862 17 C -0.106 4.106 18 C -0.330 4.330 19 S 0.489 5.511 20 C -0.362 4.362 21 C -0.148 4.148 22 O -0.351 6.351 23 Si 0.620 3.380 24 C -0.104 4.104 25 N -0.319 5.319 26 C -0.166 4.166 27 C -0.173 4.173 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.244 0.756 33 H 0.196 0.804 34 H 0.208 0.792 35 H 0.200 0.800 36 H 0.150 0.850 37 H 0.237 0.763 38 H -0.204 1.204 39 H -0.181 1.181 40 H 0.161 0.839 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.160 15.408 39.554 42.652 hybrid contribution 2.107 0.364 1.388 2.549 sum -2.053 15.772 40.942 43.923 Atomic orbital electron populations 1.42239 1.22038 1.21076 1.16653 0.72590 0.71855 0.71812 1.22860 1.04620 0.93338 0.84778 0.83315 1.21971 1.03852 1.00478 0.91186 1.21966 1.02177 0.94360 0.99222 1.21501 1.00078 0.91868 0.82846 0.88925 1.44730 1.28775 1.54468 1.05724 1.18780 0.88608 0.87698 0.86628 1.22429 0.98736 1.08308 1.02031 1.23484 0.97963 0.91313 0.87217 1.68434 1.14165 1.13008 1.34391 1.20536 0.86625 0.89585 0.89497 1.17223 0.97766 1.03454 0.92131 1.25517 1.01153 1.01899 1.04414 1.83145 1.22693 1.46351 0.98876 1.24887 1.02234 1.07852 1.01268 1.24546 0.92385 1.04155 0.93736 1.86610 1.30716 1.33021 1.84751 0.94477 0.84194 0.81183 0.78114 1.20050 1.00644 0.99061 0.90604 1.67805 1.36252 1.28163 0.99662 1.21711 1.02524 0.99866 0.92465 1.21953 1.03834 0.92630 0.98859 0.87617 0.87888 0.92416 0.90993 0.75632 0.80418 0.79238 0.79969 0.84957 0.76327 1.20373 1.18066 0.83927 0.90055 0.91449 0.87064 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 49.05 4.15 -168.66 -0.70 48.35 16 2 H 0.44 -36.24 8.90 -89.70 -0.80 -37.03 16 3 H 0.45 -37.03 8.96 -89.69 -0.80 -37.84 16 4 H 0.45 -37.19 8.96 -89.70 -0.80 -37.99 16 5 C 0.05 -3.35 3.02 44.91 0.14 -3.21 16 6 H 0.15 -9.95 8.14 -2.38 -0.02 -9.97 16 7 C -0.14 7.96 5.43 30.59 0.17 8.12 16 8 C -0.14 6.13 5.45 30.59 0.17 6.29 16 9 C 0.14 -5.75 2.15 44.99 0.10 -5.65 16 10 H 0.09 -3.83 6.52 -2.38 -0.02 -3.85 16 11 N -0.71 20.43 5.23 -324.09 -1.69 18.73 16 12 C 0.43 -8.28 7.68 133.22 1.02 -7.26 16 13 C -0.29 6.47 8.91 22.61 0.20 6.67 16 14 C 0.16 -2.65 11.28 84.60 0.95 -1.69 16 15 N -0.58 4.54 9.83 -189.53 -1.86 2.68 16 16 C 0.41 -2.88 7.58 137.40 1.04 -1.84 16 17 C -0.09 0.64 5.80 -21.17 -0.12 0.51 16 18 C -0.19 2.02 10.42 66.98 0.70 2.72 16 19 S 0.22 -2.82 20.33 -56.49 -1.15 -3.96 16 20 C -0.25 2.39 5.68 24.53 0.14 2.53 16 21 C -0.04 0.38 2.96 71.24 0.21 0.59 16 22 O -0.54 3.76 12.88 -148.98 -1.92 1.84 16 23 Si 0.72 -8.26 30.97 68.60 2.12 -6.14 16 24 C -0.07 0.50 9.65 21.46 0.21 0.71 16 25 N -0.59 6.65 9.85 -186.85 -1.84 4.81 16 26 C -0.13 5.88 5.39 30.59 0.16 6.04 16 27 C -0.13 7.95 5.43 30.59 0.17 8.11 16 28 H 0.11 -6.28 8.14 -2.39 -0.02 -6.30 16 29 H 0.10 -6.16 8.14 -2.38 -0.02 -6.18 16 30 H 0.06 -2.14 7.71 -2.39 -0.02 -2.16 16 31 H 0.07 -3.03 8.14 -2.39 -0.02 -3.05 16 32 H 0.41 -11.49 8.73 -92.71 -0.81 -12.30 16 33 H 0.18 -5.72 6.26 -2.91 -0.02 -5.74 16 34 H 0.19 -4.31 8.06 -2.91 -0.02 -4.34 16 35 H 0.18 -2.39 7.90 -2.91 -0.02 -2.42 16 36 H 0.13 -1.56 7.96 -2.39 -0.02 -1.58 16 37 H 0.39 -4.92 8.70 -74.06 -0.64 -5.56 16 38 H -0.28 1.17 7.11 99.48 0.71 1.87 16 39 H -0.26 2.26 7.11 99.48 0.71 2.97 16 40 H 0.14 -0.70 7.90 -2.91 -0.02 -0.73 16 41 H 0.08 -3.69 8.14 -2.38 -0.02 -3.71 16 42 H 0.07 -2.71 8.14 -2.39 -0.02 -2.73 16 43 H 0.11 -6.77 8.14 -2.39 -0.02 -6.79 16 44 H 0.10 -6.09 8.14 -2.39 -0.02 -6.11 16 Total: 1.00 -98.04 365.99 -4.53 -102.58 By element: Atomic # 1 Polarization: -188.79 SS G_CDS: -2.74 Total: -191.53 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 5.25 Total: 22.65 kcal Atomic # 7 Polarization: 80.67 SS G_CDS: -6.10 Total: 74.57 kcal Atomic # 8 Polarization: 3.76 SS G_CDS: -1.92 Total: 1.84 kcal Atomic # 14 Polarization: -8.26 SS G_CDS: 2.12 Total: -6.14 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -1.15 Total: -3.96 kcal Total: -98.04 -4.53 -102.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17085348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.991 kcal (2) G-P(sol) polarization free energy of solvation -98.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds