Wall clock time and date at job start Mon Mar 8 2021 09:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00899 * 1 3 3 H 1.00908 * 109.46323 * 1 2 4 4 H 1.00902 * 109.47210 * 240.00529 * 1 2 3 5 5 C 1.46893 * 109.47524 * 119.99850 * 1 2 3 6 6 H 1.09009 * 109.47264 * 180.02562 * 5 1 2 7 7 C 1.52993 * 109.47511 * 300.00296 * 5 1 2 8 8 C 1.53000 * 109.47512 * 180.02562 * 7 5 1 9 9 C 1.52995 * 109.46898 * 299.99835 * 8 7 5 10 10 H 1.09002 * 109.47544 * 299.99985 * 9 8 7 11 11 N 1.46499 * 109.47258 * 179.97438 * 9 8 7 12 12 C 1.39005 * 120.00007 * 84.99964 * 11 9 8 13 13 C 1.39265 * 120.01870 * 0.02562 * 12 11 9 14 14 N 1.32060 * 120.13852 * 179.97438 * 13 12 11 15 15 C 1.32028 * 120.20054 * 0.02562 * 14 13 12 16 16 C 1.39437 * 120.04219 * 0.02562 * 15 14 13 17 17 C 1.48183 * 120.07068 * 179.97438 * 16 15 14 18 18 C 1.34694 * 122.79546 * 180.02562 * 17 16 15 19 19 S 1.75851 * 109.53144 * 179.97438 * 18 17 16 20 20 C 1.75806 * 91.16602 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.01794 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47372 * 244.97330 * 21 20 19 23 23 Si 1.86299 * 109.47130 * 4.97835 * 21 20 19 24 24 C 1.33002 * 109.96258 * 359.72576 * 20 19 18 25 25 N 1.32626 * 120.02412 * 179.72132 * 12 11 9 26 26 C 1.53004 * 109.46864 * 60.00173 * 9 8 7 27 27 C 1.52997 * 109.47128 * 60.00736 * 5 1 2 28 28 H 1.09008 * 109.47625 * 300.00130 * 7 5 1 29 29 H 1.08997 * 109.47189 * 59.99875 * 7 5 1 30 30 H 1.09003 * 109.47050 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47010 * 60.00146 * 8 7 5 32 32 H 0.97005 * 120.00261 * 265.00500 * 11 9 8 33 33 H 1.08004 * 119.93226 * 359.97438 * 13 12 11 34 34 H 1.08005 * 119.97614 * 179.97438 * 15 14 13 35 35 H 1.08005 * 125.23671 * 0.02562 * 18 17 16 36 36 H 1.09008 * 109.46525 * 124.97721 * 21 20 19 37 37 H 0.96699 * 114.00576 * 179.97438 * 22 21 20 38 38 H 1.48500 * 109.99781 * 299.99912 * 23 21 20 39 39 H 1.48500 * 110.00156 * 61.31810 * 23 21 20 40 40 H 1.07994 * 122.53492 * 180.26101 * 24 20 19 41 41 H 1.08997 * 109.47519 * 59.99913 * 26 9 8 42 42 H 1.09009 * 109.47062 * 179.97438 * 26 9 8 43 43 H 1.08994 * 109.47626 * 59.99903 * 27 5 1 44 44 H 1.09002 * 109.47045 * 299.99686 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9514 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4897 -0.6924 -1.1994 6 1 -1.5798 -0.6920 -1.1996 7 6 0.0202 0.0287 -2.4486 8 6 -0.4904 -0.6921 -3.6978 9 6 0.0190 -2.1348 -3.6982 10 1 1.1090 -2.1353 -3.6984 11 7 -0.4704 -2.8252 -4.8940 12 6 0.2269 -2.7195 -6.0918 13 6 1.3910 -1.9578 -6.1555 14 7 2.0556 -1.8562 -7.2922 15 6 1.6200 -2.4754 -8.3738 16 6 0.4547 -3.2393 -8.3193 17 6 -0.0351 -3.9340 -9.5331 18 6 -1.1532 -4.6851 -9.5427 19 16 -1.4068 -5.3412 -11.1544 20 6 0.0466 -4.5479 -11.7452 21 6 0.5630 -4.6301 -13.1585 22 8 1.8228 -5.3044 -13.1669 23 14 -0.6526 -5.5720 -14.2100 24 6 0.6202 -3.8602 -10.7618 25 7 -0.2127 -3.3489 -7.1733 26 6 -0.4911 -2.8560 -2.4489 27 6 0.0200 -2.1350 -1.1993 28 1 -0.3430 1.0565 -2.4487 29 1 1.1102 0.0286 -2.4487 30 1 -0.1267 -0.1786 -4.5879 31 1 -1.5805 -0.6916 -3.6976 32 1 -1.2811 -3.3561 -4.8499 33 1 1.7511 -1.4491 -5.2734 34 1 2.1661 -2.3895 -9.3016 35 1 -1.7956 -4.8571 -8.6917 36 1 0.6868 -3.6239 -13.5591 37 1 2.2152 -5.3941 -14.0462 38 1 -0.8302 -6.9455 -13.6742 39 1 -1.9577 -4.8640 -14.2353 40 1 1.5266 -3.2905 -10.9034 41 1 -1.5810 -2.8555 -2.4486 42 1 -0.1285 -3.8840 -2.4493 43 1 -0.3433 -2.6488 -0.3094 44 1 1.1101 -2.1351 -1.1994 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081484_17085452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:16 Heat of formation + Delta-G solvation = 171.670843 kcal Electronic energy + Delta-G solvation = -25675.774898 eV Core-core repulsion = 22033.173981 eV Total energy + Delta-G solvation = -3642.600917 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.64193 -42.87834 -40.39768 -39.74409 -38.16684 -37.04630 -35.65306 -34.10513 -33.06995 -31.71382 -30.53395 -27.83540 -27.17244 -26.22791 -25.79119 -24.82300 -23.76194 -23.05971 -21.46819 -21.27540 -21.10700 -20.12943 -19.91400 -19.37523 -19.05308 -18.64690 -18.37983 -17.97316 -17.55010 -17.35326 -16.99926 -16.74741 -16.41757 -16.19868 -15.81983 -15.64495 -15.45016 -15.15347 -14.86872 -14.83487 -14.62177 -14.54329 -14.30063 -14.19799 -14.16315 -13.86145 -13.41000 -13.32483 -13.24534 -13.15682 -12.70791 -12.48156 -12.30869 -11.00046 -10.95779 -10.45871 -10.30065 -9.67985 -5.76476 -1.34442 -1.27279 -0.60795 -0.48568 -0.15901 0.14159 0.57172 0.60153 0.62730 0.66955 0.78236 0.94726 1.07219 1.35850 1.40551 1.50688 1.59043 1.86604 1.92735 2.05593 2.14325 2.21959 2.23510 2.29502 2.41355 2.52022 2.58480 2.66312 2.72093 2.77263 2.78290 3.06325 3.16762 3.18707 3.23536 3.29585 3.36891 3.42877 3.51281 3.55824 3.74577 3.88237 4.26755 4.32116 4.47824 4.63118 4.68006 5.23393 5.62691 5.98634 6.06229 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.002238 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.116244 B =12508.095518 C =12993.635389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.438 0.562 4 H 0.437 0.563 5 C 0.024 3.976 6 H 0.144 0.856 7 C -0.140 4.140 8 C -0.139 4.139 9 C 0.151 3.849 10 H 0.091 0.909 11 N -0.717 5.717 12 C 0.361 3.639 13 C -0.022 4.022 14 N -0.394 5.394 15 C 0.004 3.996 16 C 0.207 3.793 17 C -0.080 4.080 18 C -0.152 4.152 19 S 0.120 5.880 20 C -0.173 4.173 21 C -0.035 4.035 22 O -0.543 6.543 23 Si 0.670 3.330 24 C -0.085 4.085 25 N -0.498 5.498 26 C -0.126 4.126 27 C -0.138 4.138 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.409 0.591 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.087 0.913 37 H 0.387 0.613 38 H -0.234 1.234 39 H -0.239 1.239 40 H 0.151 0.849 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 14.843 32.885 36.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.266 0.734 4 H 0.266 0.734 5 C -0.080 4.080 6 H 0.162 0.838 7 C -0.179 4.179 8 C -0.179 4.179 9 C 0.044 3.956 10 H 0.108 0.892 11 N -0.351 5.351 12 C 0.123 3.877 13 C -0.189 4.189 14 N -0.106 5.106 15 C -0.158 4.158 16 C 0.066 3.934 17 C -0.094 4.094 18 C -0.289 4.289 19 S 0.385 5.615 20 C -0.289 4.289 21 C -0.148 4.148 22 O -0.350 6.350 23 Si 0.569 3.431 24 C -0.115 4.115 25 N -0.221 5.221 26 C -0.165 4.165 27 C -0.176 4.176 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.246 0.754 33 H 0.177 0.823 34 H 0.189 0.811 35 H 0.193 0.807 36 H 0.105 0.895 37 H 0.235 0.765 38 H -0.158 1.158 39 H -0.163 1.163 40 H 0.169 0.831 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.710 13.392 32.724 35.462 hybrid contribution 0.885 1.137 1.409 2.015 sum -1.825 14.529 34.133 37.141 Atomic orbital electron populations 1.42642 1.21337 1.20773 1.18639 0.73735 0.73351 0.73391 1.23579 1.04556 0.95713 0.84166 0.83834 1.22064 1.03218 1.00377 0.92200 1.22094 1.02869 0.95664 0.97228 1.21036 0.99780 0.90707 0.84041 0.89156 1.44267 1.29711 1.55629 1.05490 1.19163 0.90153 0.91473 0.86957 1.23008 0.94311 1.03634 0.97944 1.68223 1.28662 1.15345 0.98404 1.23456 0.96093 0.97812 0.98403 1.19990 0.91080 0.92418 0.89945 1.17299 0.97257 1.02745 0.92133 1.26148 1.00889 1.01151 1.00707 1.84604 1.24393 1.49577 1.02921 1.23364 1.00951 1.05446 0.99158 1.23966 0.93562 1.02056 0.95227 1.86497 1.34008 1.79487 1.35004 0.94603 0.78992 0.81167 0.88326 1.19910 1.00852 1.00546 0.90185 1.67821 1.33065 1.22968 0.98245 1.21748 1.02684 1.00884 0.91149 1.22032 1.03314 0.90762 1.01487 0.88725 0.88943 0.89096 0.89875 0.75385 0.82350 0.81114 0.80657 0.89550 0.76458 1.15773 1.16277 0.83102 0.89708 0.88605 0.88530 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 24.39 4.15 -4.67 -0.02 24.37 16 2 H 0.43 -17.06 8.90 -39.29 -0.35 -17.41 16 3 H 0.44 -17.37 8.96 -39.29 -0.35 -17.72 16 4 H 0.44 -17.41 8.96 -39.29 -0.35 -17.77 16 5 C 0.02 -0.77 3.02 -67.72 -0.20 -0.97 16 6 H 0.14 -4.66 8.14 -51.92 -0.42 -5.08 16 7 C -0.14 3.98 5.43 -26.73 -0.15 3.83 16 8 C -0.14 3.13 5.43 -26.73 -0.15 2.99 16 9 C 0.15 -3.13 2.14 -67.93 -0.15 -3.28 16 10 H 0.09 -1.88 6.47 -51.93 -0.34 -2.21 16 11 N -0.72 11.11 5.24 -53.84 -0.28 10.83 16 12 C 0.36 -3.88 7.64 -154.78 -1.18 -5.06 16 13 C -0.02 0.23 10.00 -17.07 -0.17 0.06 16 14 N -0.39 2.91 10.48 -12.60 -0.13 2.78 16 15 C 0.00 -0.03 10.67 -17.02 -0.18 -0.21 16 16 C 0.21 -1.34 6.74 -82.80 -0.56 -1.90 16 17 C -0.08 0.47 5.79 -106.62 -0.62 -0.15 16 18 C -0.15 0.89 10.74 29.48 0.32 1.21 16 19 S 0.12 -0.60 20.55 -107.50 -2.21 -2.81 16 20 C -0.17 0.90 5.71 -36.12 -0.21 0.69 16 21 C -0.04 0.25 2.94 36.00 0.11 0.35 16 22 O -0.54 3.64 12.86 -35.23 -0.45 3.19 16 23 Si 0.67 -4.84 30.96 -169.99 -5.26 -10.10 16 24 C -0.08 0.50 9.39 -40.95 -0.38 0.12 16 25 N -0.50 3.74 10.01 -8.80 -0.09 3.65 16 26 C -0.13 2.96 5.39 -26.70 -0.14 2.82 16 27 C -0.14 3.97 5.43 -26.71 -0.15 3.82 16 28 H 0.09 -2.71 8.14 -51.92 -0.42 -3.14 16 29 H 0.09 -2.66 8.14 -51.93 -0.42 -3.08 16 30 H 0.09 -1.76 7.68 -51.93 -0.40 -2.16 16 31 H 0.08 -1.81 8.14 -51.93 -0.42 -2.23 16 32 H 0.41 -6.30 8.73 -40.82 -0.36 -6.65 16 33 H 0.16 -2.34 6.07 -52.48 -0.32 -2.66 16 34 H 0.17 -1.47 6.54 -52.48 -0.34 -1.81 16 35 H 0.18 -1.27 7.96 -52.48 -0.42 -1.69 16 36 H 0.09 -0.78 7.96 -51.92 -0.41 -1.20 16 37 H 0.39 -4.45 8.74 45.56 0.40 -4.05 16 38 H -0.23 0.96 7.11 56.52 0.40 1.36 16 39 H -0.24 1.19 7.11 56.52 0.40 1.59 16 40 H 0.15 -1.17 6.70 -52.49 -0.35 -1.52 16 41 H 0.08 -1.97 8.14 -51.93 -0.42 -2.39 16 42 H 0.10 -2.02 8.14 -51.92 -0.42 -2.44 16 43 H 0.10 -2.84 8.14 -51.93 -0.42 -3.26 16 44 H 0.09 -2.71 8.14 -51.93 -0.42 -3.14 16 LS Contribution 363.74 15.07 5.48 5.48 Total: 1.00 -44.00 363.74 -12.94 -56.95 By element: Atomic # 1 Polarization: -92.49 SS G_CDS: -6.17 Total: -98.66 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -3.81 Total: 4.33 kcal Atomic # 7 Polarization: 42.14 SS G_CDS: -0.52 Total: 41.62 kcal Atomic # 8 Polarization: 3.64 SS G_CDS: -0.45 Total: 3.19 kcal Atomic # 14 Polarization: -4.84 SS G_CDS: -5.26 Total: -10.10 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.21 Total: -2.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -44.00 -12.94 -56.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17085452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.619 kcal (2) G-P(sol) polarization free energy of solvation -44.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds