Wall clock time and date at job start Mon Mar 8 2021 09:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00899 * 1 3 3 H 1.00908 * 109.46323 * 1 2 4 4 H 1.00902 * 109.47210 * 240.00529 * 1 2 3 5 5 C 1.46893 * 109.47524 * 119.99850 * 1 2 3 6 6 H 1.09009 * 109.47264 * 180.02562 * 5 1 2 7 7 C 1.52993 * 109.47511 * 300.00296 * 5 1 2 8 8 C 1.53000 * 109.47512 * 180.02562 * 7 5 1 9 9 C 1.52995 * 109.46898 * 299.99835 * 8 7 5 10 10 H 1.09002 * 109.47544 * 299.99985 * 9 8 7 11 11 N 1.46499 * 109.47258 * 179.97438 * 9 8 7 12 12 C 1.39005 * 120.00007 * 84.99964 * 11 9 8 13 13 C 1.39265 * 120.01870 * 0.02562 * 12 11 9 14 14 N 1.32060 * 120.13852 * 179.97438 * 13 12 11 15 15 C 1.32028 * 120.20054 * 0.02562 * 14 13 12 16 16 C 1.39437 * 120.04219 * 0.02562 * 15 14 13 17 17 C 1.48183 * 120.07068 * 179.97438 * 16 15 14 18 18 C 1.34694 * 122.79546 * 180.02562 * 17 16 15 19 19 S 1.75851 * 109.53144 * 179.97438 * 18 17 16 20 20 C 1.75806 * 91.16602 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.01794 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47372 * 244.97330 * 21 20 19 23 23 Si 1.86299 * 109.47130 * 4.97835 * 21 20 19 24 24 C 1.33002 * 109.96258 * 359.72576 * 20 19 18 25 25 N 1.32626 * 120.02412 * 179.72132 * 12 11 9 26 26 C 1.53004 * 109.46864 * 60.00173 * 9 8 7 27 27 C 1.52997 * 109.47128 * 60.00736 * 5 1 2 28 28 H 1.09008 * 109.47625 * 300.00130 * 7 5 1 29 29 H 1.08997 * 109.47189 * 59.99875 * 7 5 1 30 30 H 1.09003 * 109.47050 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47010 * 60.00146 * 8 7 5 32 32 H 0.97005 * 120.00261 * 265.00500 * 11 9 8 33 33 H 1.08004 * 119.93226 * 359.97438 * 13 12 11 34 34 H 1.08005 * 119.97614 * 179.97438 * 15 14 13 35 35 H 1.08005 * 125.23671 * 0.02562 * 18 17 16 36 36 H 1.09008 * 109.46525 * 124.97721 * 21 20 19 37 37 H 0.96699 * 114.00576 * 179.97438 * 22 21 20 38 38 H 1.48500 * 109.99781 * 299.99912 * 23 21 20 39 39 H 1.48500 * 110.00156 * 61.31810 * 23 21 20 40 40 H 1.07994 * 122.53492 * 180.26101 * 24 20 19 41 41 H 1.08997 * 109.47519 * 59.99913 * 26 9 8 42 42 H 1.09009 * 109.47062 * 179.97438 * 26 9 8 43 43 H 1.08994 * 109.47626 * 59.99903 * 27 5 1 44 44 H 1.09002 * 109.47045 * 299.99686 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9514 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4897 -0.6924 -1.1994 6 1 -1.5798 -0.6920 -1.1996 7 6 0.0202 0.0287 -2.4486 8 6 -0.4904 -0.6921 -3.6978 9 6 0.0190 -2.1348 -3.6982 10 1 1.1090 -2.1353 -3.6984 11 7 -0.4704 -2.8252 -4.8940 12 6 0.2269 -2.7195 -6.0918 13 6 1.3910 -1.9578 -6.1555 14 7 2.0556 -1.8562 -7.2922 15 6 1.6200 -2.4754 -8.3738 16 6 0.4547 -3.2393 -8.3193 17 6 -0.0351 -3.9340 -9.5331 18 6 -1.1532 -4.6851 -9.5427 19 16 -1.4068 -5.3412 -11.1544 20 6 0.0466 -4.5479 -11.7452 21 6 0.5630 -4.6301 -13.1585 22 8 1.8228 -5.3044 -13.1669 23 14 -0.6526 -5.5720 -14.2100 24 6 0.6202 -3.8602 -10.7618 25 7 -0.2127 -3.3489 -7.1733 26 6 -0.4911 -2.8560 -2.4489 27 6 0.0200 -2.1350 -1.1993 28 1 -0.3430 1.0565 -2.4487 29 1 1.1102 0.0286 -2.4487 30 1 -0.1267 -0.1786 -4.5879 31 1 -1.5805 -0.6916 -3.6976 32 1 -1.2811 -3.3561 -4.8499 33 1 1.7511 -1.4491 -5.2734 34 1 2.1661 -2.3895 -9.3016 35 1 -1.7956 -4.8571 -8.6917 36 1 0.6868 -3.6239 -13.5591 37 1 2.2152 -5.3941 -14.0462 38 1 -0.8302 -6.9455 -13.6742 39 1 -1.9577 -4.8640 -14.2353 40 1 1.5266 -3.2905 -10.9034 41 1 -1.5810 -2.8555 -2.4486 42 1 -0.1285 -3.8840 -2.4493 43 1 -0.3433 -2.6488 -0.3094 44 1 1.1101 -2.1351 -1.1994 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17085452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:15 Heat of formation + Delta-G solvation = 136.044897 kcal Electronic energy + Delta-G solvation = -25677.319755 eV Core-core repulsion = 22033.173981 eV Total energy + Delta-G solvation = -3644.145774 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26713 -41.08090 -39.50814 -38.23803 -37.53720 -35.71727 -34.61951 -32.17242 -32.01821 -30.85111 -28.91584 -27.23407 -26.41951 -24.70321 -24.01624 -23.44811 -22.47014 -21.43001 -20.54028 -19.38732 -18.61399 -18.51678 -18.42185 -18.30928 -17.90275 -17.57427 -17.35878 -16.76314 -16.33164 -16.27485 -15.86718 -15.36173 -15.21660 -14.95412 -14.42472 -14.27740 -14.22793 -14.14180 -13.81664 -13.72921 -13.65440 -13.40289 -12.84367 -12.76110 -12.65350 -12.63171 -12.41971 -12.26753 -12.25710 -12.05254 -11.84263 -11.50365 -11.23858 -10.43414 -10.24733 -9.92022 -9.69979 -8.87261 -5.24477 -0.73852 0.00566 0.18875 0.30001 0.59746 1.16108 1.47905 1.55117 1.57884 1.84548 1.86495 2.78052 2.97052 3.10701 3.24666 3.31113 3.34128 3.43210 3.62083 3.66375 3.78459 3.84016 3.89976 3.91780 3.97360 4.09891 4.10943 4.12948 4.28284 4.35868 4.39437 4.45024 4.48962 4.60314 4.61648 4.68908 4.80674 4.83062 4.98300 4.99878 5.03944 5.05521 5.08358 5.16331 5.24253 5.29751 5.71664 6.22496 6.45194 6.82713 6.84779 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.002238 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.116244 B =12508.095518 C =12993.635389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.444 0.556 3 H 0.450 0.550 4 H 0.450 0.550 5 C 0.050 3.950 6 H 0.150 0.850 7 C -0.138 4.138 8 C -0.139 4.139 9 C 0.140 3.860 10 H 0.093 0.907 11 N -0.707 5.707 12 C 0.361 3.639 13 C -0.011 4.011 14 N -0.418 5.418 15 C -0.018 4.018 16 C 0.187 3.813 17 C -0.081 4.081 18 C -0.154 4.154 19 S 0.076 5.924 20 C -0.186 4.186 21 C -0.035 4.035 22 O -0.560 6.560 23 Si 0.745 3.255 24 C -0.086 4.086 25 N -0.527 5.527 26 C -0.126 4.126 27 C -0.135 4.135 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.197 0.803 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.113 0.887 37 H 0.407 0.593 38 H -0.283 1.283 39 H -0.272 1.272 40 H 0.168 0.832 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 16.963 36.373 40.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.282 0.718 5 C -0.056 4.056 6 H 0.167 0.833 7 C -0.176 4.176 8 C -0.178 4.178 9 C 0.036 3.964 10 H 0.111 0.889 11 N -0.339 5.339 12 C 0.119 3.881 13 C -0.180 4.180 14 N -0.130 5.130 15 C -0.178 4.178 16 C 0.046 3.954 17 C -0.095 4.095 18 C -0.291 4.291 19 S 0.340 5.660 20 C -0.302 4.302 21 C -0.148 4.148 22 O -0.371 6.371 23 Si 0.649 3.351 24 C -0.116 4.116 25 N -0.251 5.251 26 C -0.165 4.165 27 C -0.173 4.173 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.213 0.787 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.131 0.869 37 H 0.259 0.741 38 H -0.209 1.209 39 H -0.198 1.198 40 H 0.185 0.815 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.797 15.537 36.226 39.459 hybrid contribution 0.564 0.483 0.553 0.926 sum -1.233 16.020 36.779 40.136 Atomic orbital electron populations 1.42240 1.22051 1.21071 1.16650 0.72582 0.71868 0.71808 1.22857 1.04629 0.93341 0.84746 0.83262 1.21977 1.03875 1.00511 0.91224 1.21987 1.02318 0.94347 0.99194 1.21523 1.00020 0.91903 0.82988 0.88925 1.44744 1.28888 1.54881 1.05403 1.19530 0.90459 0.90558 0.87549 1.23618 0.93669 1.02594 0.98153 1.68231 1.29598 1.15991 0.99198 1.23488 0.96449 0.98823 0.99054 1.19938 0.91834 0.93413 0.90186 1.17531 0.96987 1.02235 0.92761 1.26167 1.01332 1.01467 1.00105 1.84667 1.25936 1.50964 1.04425 1.23672 1.00645 1.05519 1.00396 1.24020 0.93462 1.03399 0.93941 1.86451 1.33916 1.79615 1.37086 0.93913 0.77125 0.77217 0.86825 1.20137 1.01215 1.00331 0.89942 1.67821 1.33864 1.24444 0.98932 1.21714 1.02534 0.99877 0.92351 1.21970 1.03869 0.92608 0.98875 0.87598 0.87911 0.92536 0.90796 0.75609 0.78662 0.80663 0.80094 0.86948 0.74105 1.20923 1.19827 0.81513 0.90002 0.91371 0.87026 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.65 4.15 -168.70 -0.70 47.94 16 2 H 0.44 -35.92 8.90 -89.69 -0.80 -36.72 16 3 H 0.45 -36.73 8.96 -89.69 -0.80 -37.54 16 4 H 0.45 -36.93 8.96 -89.69 -0.80 -37.73 16 5 C 0.05 -3.33 3.02 44.91 0.14 -3.19 16 6 H 0.15 -9.91 8.14 -2.38 -0.02 -9.93 16 7 C -0.14 7.90 5.43 30.59 0.17 8.06 16 8 C -0.14 6.07 5.43 30.59 0.17 6.24 16 9 C 0.14 -5.60 2.14 44.99 0.10 -5.50 16 10 H 0.09 -3.77 6.47 -2.39 -0.02 -3.78 16 11 N -0.71 20.13 5.24 -324.26 -1.70 18.43 16 12 C 0.36 -6.76 7.64 133.03 1.02 -5.75 16 13 C -0.01 0.21 10.00 84.91 0.85 1.06 16 14 N -0.42 5.17 10.48 -193.78 -2.03 3.14 16 15 C -0.02 0.20 10.67 84.95 0.91 1.10 16 16 C 0.19 -1.75 6.74 41.89 0.28 -1.47 16 17 C -0.08 0.66 5.79 -21.16 -0.12 0.53 16 18 C -0.15 1.22 10.74 67.01 0.72 1.93 16 19 S 0.08 -0.46 20.55 -56.49 -1.16 -1.62 16 20 C -0.19 1.43 5.71 24.52 0.14 1.57 16 21 C -0.04 0.44 2.94 71.24 0.21 0.65 16 22 O -0.56 6.92 12.86 -148.98 -1.92 5.00 16 23 Si 0.74 -8.98 30.96 68.60 2.12 -6.86 16 24 C -0.09 0.78 9.39 21.39 0.20 0.98 16 25 N -0.53 6.08 10.01 -181.75 -1.82 4.26 16 26 C -0.13 5.77 5.39 30.61 0.17 5.94 16 27 C -0.14 7.90 5.43 30.61 0.17 8.06 16 28 H 0.11 -6.20 8.14 -2.38 -0.02 -6.22 16 29 H 0.10 -6.04 8.14 -2.39 -0.02 -6.06 16 30 H 0.06 -2.04 7.68 -2.39 -0.02 -2.06 16 31 H 0.07 -3.08 8.14 -2.39 -0.02 -3.10 16 32 H 0.41 -11.33 8.73 -92.70 -0.81 -12.14 16 33 H 0.20 -5.63 6.07 -2.91 -0.02 -5.64 16 34 H 0.18 -2.45 6.54 -2.91 -0.02 -2.47 16 35 H 0.18 -1.87 7.96 -2.91 -0.02 -1.89 16 36 H 0.11 -2.00 7.96 -2.38 -0.02 -2.02 16 37 H 0.41 -9.18 8.74 -74.06 -0.65 -9.83 16 38 H -0.28 1.20 7.11 99.48 0.71 1.91 16 39 H -0.27 1.86 7.11 99.48 0.71 2.57 16 40 H 0.17 -2.21 6.70 -2.91 -0.02 -2.23 16 41 H 0.08 -3.68 8.14 -2.39 -0.02 -3.70 16 42 H 0.07 -2.71 8.14 -2.38 -0.02 -2.73 16 43 H 0.11 -6.74 8.14 -2.39 -0.02 -6.76 16 44 H 0.10 -6.04 8.14 -2.39 -0.02 -6.06 16 Total: 1.00 -98.76 363.74 -4.84 -103.60 By element: Atomic # 1 Polarization: -191.40 SS G_CDS: -2.74 Total: -194.13 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 5.10 Total: 20.23 kcal Atomic # 7 Polarization: 80.02 SS G_CDS: -6.25 Total: 73.77 kcal Atomic # 8 Polarization: 6.92 SS G_CDS: -1.92 Total: 5.00 kcal Atomic # 14 Polarization: -8.98 SS G_CDS: 2.12 Total: -6.86 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -1.16 Total: -1.62 kcal Total: -98.76 -4.84 -103.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17085452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.649 kcal (2) G-P(sol) polarization free energy of solvation -98.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds