Wall clock time and date at job start Mon Mar 8 2021 09:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00902 * 109.47298 * 1 2 4 4 H 1.00908 * 109.46712 * 240.00457 * 1 2 3 5 5 C 1.46901 * 109.47628 * 120.00414 * 1 2 3 6 6 H 1.08997 * 109.46698 * 299.99919 * 5 1 2 7 7 C 1.52994 * 109.47022 * 59.99852 * 5 1 2 8 8 C 1.53005 * 109.47191 * 180.02562 * 7 5 1 9 9 C 1.52994 * 109.46901 * 300.00165 * 8 7 5 10 10 H 1.08997 * 109.47256 * 299.99457 * 9 8 7 11 11 N 1.46502 * 109.47058 * 180.02562 * 9 8 7 12 12 C 1.38414 * 120.00273 * 154.99829 * 11 9 8 13 13 N 1.32358 * 119.15096 * 179.97438 * 12 11 9 14 14 C 1.33224 * 120.58282 * 179.97438 * 13 12 11 15 15 C 1.48056 * 120.51632 * 179.97438 * 14 13 12 16 16 C 1.34569 * 122.86541 * 180.02562 * 15 14 13 17 17 S 1.70640 * 110.50773 * 179.71211 * 16 15 14 18 18 C 1.75729 * 91.70193 * 0.32475 * 17 16 15 19 19 C 1.50707 * 125.10728 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46442 * 244.69147 * 19 18 17 21 21 Si 1.86293 * 109.47256 * 4.68714 * 19 18 17 22 22 C 1.33116 * 109.78181 * 359.67569 * 18 17 16 23 23 C 1.39885 * 118.96220 * 0.25247 * 14 13 12 24 24 C 1.38211 * 118.44906 * 359.50459 * 23 14 13 25 25 N 1.32439 * 119.30848 * 0.49732 * 24 23 14 26 26 C 1.52999 * 109.47645 * 59.99890 * 9 8 7 27 27 C 1.52995 * 109.47133 * 179.97438 * 5 1 2 28 28 H 1.08995 * 109.47684 * 60.00072 * 7 5 1 29 29 H 1.09008 * 109.47065 * 300.00067 * 7 5 1 30 30 H 1.08997 * 109.47237 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46722 * 59.99949 * 8 7 5 32 32 H 0.97005 * 120.00074 * 334.99496 * 11 9 8 33 33 H 1.07993 * 124.74890 * 359.96003 * 16 15 14 34 34 H 1.08999 * 109.47345 * 124.69217 * 19 18 17 35 35 H 0.96700 * 114.00311 * 60.00230 * 20 19 18 36 36 H 1.48506 * 109.99973 * 180.02562 * 21 19 18 37 37 H 1.48493 * 110.00375 * 301.32185 * 21 19 18 38 38 H 1.07994 * 123.13135 * 180.28633 * 22 18 17 39 39 H 1.08003 * 120.77130 * 179.75284 * 23 14 13 40 40 H 1.08001 * 120.34709 * 180.26452 * 24 23 14 41 41 H 1.08997 * 109.47147 * 59.99500 * 26 9 8 42 42 H 1.08998 * 109.47255 * 179.97438 * 26 9 8 43 43 H 1.08997 * 109.47554 * 299.99752 * 27 5 1 44 44 H 1.09005 * 109.47098 * 60.00146 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8240 5 6 -0.4898 -0.6926 -1.1994 6 1 -0.1265 -0.1788 -2.0893 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4894 -2.8562 -2.4488 9 6 -2.0194 -2.8561 -2.4493 10 1 -2.3830 -3.3700 -1.5595 11 7 -2.5073 -3.5472 -3.6453 12 6 -3.7623 -4.1311 -3.6437 13 7 -4.1865 -4.7507 -4.7337 14 6 -5.3892 -5.3230 -4.7634 15 6 -5.8625 -6.0152 -5.9836 16 6 -7.0676 -6.6083 -6.0658 17 16 -7.2897 -7.2995 -7.6101 18 6 -5.6985 -6.7687 -8.1341 19 6 -5.1072 -7.0180 -9.4977 20 8 -3.9614 -7.8628 -9.3727 21 14 -6.3748 -7.8474 -10.5821 22 6 -5.0966 -6.1077 -7.1478 23 6 -6.2002 -5.2545 -3.6257 24 6 -5.7138 -4.6018 -2.5087 25 7 -4.5080 -4.0557 -2.5507 26 6 -2.5294 -1.4137 -2.4493 27 6 -2.0197 -0.6931 -1.1989 28 1 -0.3430 -2.6488 -0.3093 29 1 1.1102 -2.1350 -1.1994 30 1 -0.1258 -3.8837 -2.4490 31 1 -0.1258 -2.3423 -3.3385 32 1 -1.9510 -3.5955 -4.4385 33 1 -7.7943 -6.6389 -5.2675 34 1 -4.8118 -6.0688 -9.9448 35 1 -4.1504 -8.7266 -8.9813 36 1 -5.8037 -8.0993 -11.9296 37 1 -6.8092 -9.1276 -9.9677 38 1 -4.1084 -5.6820 -7.2395 39 1 -7.1819 -5.7048 -3.6190 40 1 -6.3124 -4.5343 -1.6123 41 1 -2.1658 -0.8997 -3.3391 42 1 -3.6194 -1.4137 -2.4501 43 1 -2.3827 -1.2071 -0.3089 44 1 -2.3834 0.3345 -1.1988 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081484_17085550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:09:27 Heat of formation + Delta-G solvation = 169.119774 kcal Electronic energy + Delta-G solvation = -25787.510758 eV Core-core repulsion = 22144.799218 eV Total energy + Delta-G solvation = -3642.711540 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.48330 -42.74402 -40.36298 -39.72262 -38.33794 -36.59943 -35.31698 -33.93677 -33.43639 -31.79080 -30.47074 -27.81163 -27.14319 -26.12774 -25.60482 -24.94649 -23.57376 -23.07427 -21.38457 -21.35754 -21.17573 -20.02805 -19.78992 -19.71539 -18.86537 -18.28644 -17.78642 -17.50582 -17.40462 -17.03665 -16.93505 -16.73277 -16.64894 -16.04114 -15.92499 -15.67564 -15.58827 -15.28926 -14.81782 -14.69764 -14.60221 -14.51734 -14.46155 -14.24314 -14.14160 -13.59863 -13.18494 -13.14562 -12.90337 -12.75680 -12.60271 -12.43591 -12.22594 -11.33292 -10.96199 -10.52811 -10.29231 -9.85879 -5.61736 -1.26626 -1.18617 -0.59571 -0.42837 -0.20617 0.11550 0.62407 0.68067 0.70570 0.77074 0.86339 1.00204 1.03653 1.38177 1.50845 1.60770 1.69643 2.02501 2.07796 2.18807 2.26924 2.29583 2.39704 2.47627 2.52627 2.63143 2.73809 2.77363 2.89969 2.95754 2.98206 3.10960 3.22084 3.29939 3.36652 3.40435 3.51540 3.62649 3.73138 3.77563 3.90468 3.91587 4.26605 4.44570 4.49346 4.64907 4.91900 5.13196 5.49255 5.73957 6.44852 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.002460 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.193698 B =11378.417458 C =12296.645572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.437 0.563 3 H 0.437 0.563 4 H 0.434 0.566 5 C 0.024 3.976 6 H 0.143 0.857 7 C -0.136 4.136 8 C -0.129 4.129 9 C 0.161 3.839 10 H 0.097 0.903 11 N -0.701 5.701 12 C 0.568 3.432 13 N -0.562 5.562 14 C 0.290 3.710 15 C -0.086 4.086 16 C -0.210 4.210 17 S 0.207 5.793 18 C -0.242 4.242 19 C -0.030 4.030 20 O -0.524 6.524 21 Si 0.647 3.353 22 C -0.065 4.065 23 C -0.274 4.274 24 C 0.194 3.806 25 N -0.578 5.578 26 C -0.130 4.130 27 C -0.138 4.138 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.415 0.585 33 H 0.174 0.826 34 H 0.127 0.873 35 H 0.378 0.622 36 H -0.233 1.233 37 H -0.238 1.238 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.669 21.469 22.886 35.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.265 0.735 3 H 0.266 0.734 4 H 0.262 0.738 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.174 4.174 8 C -0.168 4.168 9 C 0.055 3.945 10 H 0.115 0.885 11 N -0.339 5.339 12 C 0.210 3.790 13 N -0.284 5.284 14 C 0.142 3.858 15 C -0.101 4.101 16 C -0.349 4.349 17 S 0.475 5.525 18 C -0.359 4.359 19 C -0.143 4.143 20 O -0.330 6.330 21 Si 0.545 3.455 22 C -0.094 4.094 23 C -0.300 4.300 24 C 0.029 3.971 25 N -0.301 5.301 26 C -0.170 4.170 27 C -0.176 4.176 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.253 0.747 33 H 0.191 0.809 34 H 0.145 0.855 35 H 0.226 0.774 36 H -0.156 1.156 37 H -0.162 1.162 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.188 0.812 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.444 20.819 21.357 33.586 hybrid contribution 1.253 -0.075 1.436 1.907 sum 16.697 20.744 22.793 35.052 Atomic orbital electron populations 1.42655 1.21139 1.20690 1.18873 0.73487 0.73429 0.73770 1.23600 0.99795 0.97421 0.87196 0.83916 1.22001 1.02647 0.90837 1.01938 1.21779 0.94924 1.02918 0.97141 1.20888 0.92199 0.91920 0.89511 0.88454 1.43897 1.13926 1.59240 1.16818 1.19092 0.87143 0.87679 0.85062 1.67832 1.16935 1.15804 1.27858 1.19396 0.87177 0.87816 0.91418 1.17396 0.94747 1.04181 0.93798 1.25404 1.01110 1.04331 1.04097 1.83420 1.14065 1.51669 1.03381 1.24927 0.99540 1.09368 1.02088 1.24350 0.94781 0.99977 0.95156 1.86634 1.31778 1.30060 1.84543 0.95273 0.83872 0.85006 0.81335 1.20095 1.01017 0.97822 0.90508 1.22533 1.03761 1.08300 0.95409 1.22835 0.89548 0.87319 0.97391 1.67839 1.08135 1.26692 1.27444 1.21980 1.03520 0.95400 0.96108 1.22052 0.89132 1.03950 1.02463 0.88933 0.88716 0.88846 0.89938 0.74690 0.80893 0.85537 0.77414 1.15601 1.16189 0.82996 0.83562 0.81181 0.90614 0.89101 0.88979 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 23.78 4.15 -4.67 -0.02 23.77 16 2 H 0.44 -17.03 8.96 -39.29 -0.35 -17.38 16 3 H 0.44 -16.98 8.96 -39.29 -0.35 -17.33 16 4 H 0.43 -16.63 8.90 -39.29 -0.35 -16.98 16 5 C 0.02 -0.74 3.02 -67.72 -0.20 -0.94 16 6 H 0.14 -4.47 8.14 -51.93 -0.42 -4.89 16 7 C -0.14 3.74 5.43 -26.73 -0.15 3.59 16 8 C -0.13 2.84 5.39 -26.73 -0.14 2.69 16 9 C 0.16 -3.01 2.44 -67.93 -0.17 -3.17 16 10 H 0.10 -1.68 7.50 -51.93 -0.39 -2.07 16 11 N -0.70 9.68 5.22 -55.82 -0.29 9.39 16 12 C 0.57 -5.45 8.40 -322.92 -2.71 -8.17 16 13 N -0.56 4.10 9.99 -10.48 -0.10 3.99 16 14 C 0.29 -2.12 6.78 -82.62 -0.56 -2.68 16 15 C -0.09 0.62 5.79 -106.64 -0.62 0.00 16 16 C -0.21 1.80 10.26 29.43 0.30 2.10 16 17 S 0.21 -1.73 20.33 -107.50 -2.19 -3.92 16 18 C -0.24 1.79 5.68 -36.09 -0.21 1.58 16 19 C -0.03 0.22 2.96 36.01 0.11 0.33 16 20 O -0.52 3.06 12.88 -35.23 -0.45 2.61 16 21 Si 0.65 -4.81 30.97 -169.99 -5.26 -10.08 16 22 C -0.07 0.44 9.69 -40.83 -0.40 0.04 16 23 C -0.27 2.57 9.58 -38.98 -0.37 2.20 16 24 C 0.19 -2.03 11.28 -17.30 -0.20 -2.22 16 25 N -0.58 5.87 9.19 -14.01 -0.13 5.74 16 26 C -0.13 2.67 5.51 -26.70 -0.15 2.53 16 27 C -0.14 3.68 5.43 -26.71 -0.15 3.53 16 28 H 0.09 -2.55 8.14 -51.93 -0.42 -2.97 16 29 H 0.09 -2.68 8.14 -51.92 -0.42 -3.11 16 30 H 0.09 -1.83 8.14 -51.93 -0.42 -2.26 16 31 H 0.08 -1.81 8.14 -51.93 -0.42 -2.23 16 32 H 0.42 -5.87 8.72 -40.82 -0.36 -6.23 16 33 H 0.17 -1.89 6.84 -52.49 -0.36 -2.25 16 34 H 0.13 -1.04 7.96 -51.93 -0.41 -1.45 16 35 H 0.38 -3.23 8.70 45.56 0.40 -2.83 16 36 H -0.23 0.98 7.11 56.52 0.40 1.38 16 37 H -0.24 1.38 7.11 56.52 0.40 1.78 16 38 H 0.15 -0.96 7.96 -52.49 -0.42 -1.38 16 39 H 0.15 -1.67 6.71 -52.48 -0.35 -2.02 16 40 H 0.17 -2.30 8.06 -52.49 -0.42 -2.72 16 41 H 0.08 -1.52 8.14 -51.93 -0.42 -1.94 16 42 H 0.09 -1.51 8.14 -51.93 -0.42 -1.93 16 43 H 0.09 -2.46 8.14 -51.93 -0.42 -2.88 16 44 H 0.09 -2.49 8.14 -51.93 -0.42 -2.91 16 LS Contribution 367.16 15.07 5.53 5.53 Total: 1.00 -41.26 367.16 -14.89 -56.15 By element: Atomic # 1 Polarization: -88.23 SS G_CDS: -6.37 Total: -94.60 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -5.60 Total: 1.41 kcal Atomic # 7 Polarization: 43.43 SS G_CDS: -0.54 Total: 42.89 kcal Atomic # 8 Polarization: 3.06 SS G_CDS: -0.45 Total: 2.61 kcal Atomic # 14 Polarization: -4.81 SS G_CDS: -5.26 Total: -10.08 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.19 Total: -3.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.26 -14.89 -56.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17085550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.273 kcal (2) G-P(sol) polarization free energy of solvation -41.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds