Wall clock time and date at job start Mon Mar 8 2021 09:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00902 * 109.47298 * 1 2 4 4 H 1.00908 * 109.46712 * 240.00457 * 1 2 3 5 5 C 1.46901 * 109.47628 * 120.00414 * 1 2 3 6 6 H 1.08997 * 109.46698 * 299.99919 * 5 1 2 7 7 C 1.52994 * 109.47022 * 59.99852 * 5 1 2 8 8 C 1.53005 * 109.47191 * 180.02562 * 7 5 1 9 9 C 1.52994 * 109.46901 * 300.00165 * 8 7 5 10 10 H 1.08997 * 109.47256 * 299.99457 * 9 8 7 11 11 N 1.46502 * 109.47058 * 180.02562 * 9 8 7 12 12 C 1.38414 * 120.00273 * 154.99829 * 11 9 8 13 13 N 1.32358 * 119.15096 * 179.97438 * 12 11 9 14 14 C 1.33224 * 120.58282 * 179.97438 * 13 12 11 15 15 C 1.48056 * 120.51632 * 179.97438 * 14 13 12 16 16 C 1.34569 * 122.86541 * 180.02562 * 15 14 13 17 17 S 1.70640 * 110.50773 * 179.71211 * 16 15 14 18 18 C 1.75729 * 91.70193 * 0.32475 * 17 16 15 19 19 C 1.50707 * 125.10728 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46442 * 244.69147 * 19 18 17 21 21 Si 1.86293 * 109.47256 * 4.68714 * 19 18 17 22 22 C 1.33116 * 109.78181 * 359.67569 * 18 17 16 23 23 C 1.39885 * 118.96220 * 0.25247 * 14 13 12 24 24 C 1.38211 * 118.44906 * 359.50459 * 23 14 13 25 25 N 1.32439 * 119.30848 * 0.49732 * 24 23 14 26 26 C 1.52999 * 109.47645 * 59.99890 * 9 8 7 27 27 C 1.52995 * 109.47133 * 179.97438 * 5 1 2 28 28 H 1.08995 * 109.47684 * 60.00072 * 7 5 1 29 29 H 1.09008 * 109.47065 * 300.00067 * 7 5 1 30 30 H 1.08997 * 109.47237 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46722 * 59.99949 * 8 7 5 32 32 H 0.97005 * 120.00074 * 334.99496 * 11 9 8 33 33 H 1.07993 * 124.74890 * 359.96003 * 16 15 14 34 34 H 1.08999 * 109.47345 * 124.69217 * 19 18 17 35 35 H 0.96700 * 114.00311 * 60.00230 * 20 19 18 36 36 H 1.48506 * 109.99973 * 180.02562 * 21 19 18 37 37 H 1.48493 * 110.00375 * 301.32185 * 21 19 18 38 38 H 1.07994 * 123.13135 * 180.28633 * 22 18 17 39 39 H 1.08003 * 120.77130 * 179.75284 * 23 14 13 40 40 H 1.08001 * 120.34709 * 180.26452 * 24 23 14 41 41 H 1.08997 * 109.47147 * 59.99500 * 26 9 8 42 42 H 1.08998 * 109.47255 * 179.97438 * 26 9 8 43 43 H 1.08997 * 109.47554 * 299.99752 * 27 5 1 44 44 H 1.09005 * 109.47098 * 60.00146 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8240 5 6 -0.4898 -0.6926 -1.1994 6 1 -0.1265 -0.1788 -2.0893 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4894 -2.8562 -2.4488 9 6 -2.0194 -2.8561 -2.4493 10 1 -2.3830 -3.3700 -1.5595 11 7 -2.5073 -3.5472 -3.6453 12 6 -3.7623 -4.1311 -3.6437 13 7 -4.1865 -4.7507 -4.7337 14 6 -5.3892 -5.3230 -4.7634 15 6 -5.8625 -6.0152 -5.9836 16 6 -7.0676 -6.6083 -6.0658 17 16 -7.2897 -7.2995 -7.6101 18 6 -5.6985 -6.7687 -8.1341 19 6 -5.1072 -7.0180 -9.4977 20 8 -3.9614 -7.8628 -9.3727 21 14 -6.3748 -7.8474 -10.5821 22 6 -5.0966 -6.1077 -7.1478 23 6 -6.2002 -5.2545 -3.6257 24 6 -5.7138 -4.6018 -2.5087 25 7 -4.5080 -4.0557 -2.5507 26 6 -2.5294 -1.4137 -2.4493 27 6 -2.0197 -0.6931 -1.1989 28 1 -0.3430 -2.6488 -0.3093 29 1 1.1102 -2.1350 -1.1994 30 1 -0.1258 -3.8837 -2.4490 31 1 -0.1258 -2.3423 -3.3385 32 1 -1.9510 -3.5955 -4.4385 33 1 -7.7943 -6.6389 -5.2675 34 1 -4.8118 -6.0688 -9.9448 35 1 -4.1504 -8.7266 -8.9813 36 1 -5.8037 -8.0993 -11.9296 37 1 -6.8092 -9.1276 -9.9677 38 1 -4.1084 -5.6820 -7.2395 39 1 -7.1819 -5.7048 -3.6190 40 1 -6.3124 -4.5343 -1.6123 41 1 -2.1658 -0.8997 -3.3391 42 1 -3.6194 -1.4137 -2.4501 43 1 -2.3827 -1.2071 -0.3089 44 1 -2.3834 0.3345 -1.1988 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17085550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:09:26 Heat of formation + Delta-G solvation = 138.936433 kcal Electronic energy + Delta-G solvation = -25788.819606 eV Core-core repulsion = 22144.799218 eV Total energy + Delta-G solvation = -3644.020388 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04873 -41.04293 -39.58701 -38.17152 -37.63353 -35.10942 -34.53871 -32.46212 -32.01038 -30.87784 -28.90946 -27.15764 -26.36527 -24.64438 -24.00466 -23.50194 -22.36169 -21.44914 -20.67067 -19.25654 -19.03487 -18.48831 -18.31060 -18.07450 -17.54898 -17.32230 -16.76692 -16.42897 -16.32162 -16.22170 -16.01042 -15.30975 -15.28299 -15.00322 -14.85205 -14.22605 -14.18687 -14.07053 -13.90111 -13.70640 -13.67118 -13.38179 -12.83154 -12.56644 -12.55321 -12.45726 -12.26989 -11.95519 -11.92607 -11.88291 -11.67642 -11.47829 -11.20216 -10.80319 -10.19497 -9.90134 -9.49006 -9.03089 -5.08072 -0.56172 0.21347 0.22972 0.42552 0.71619 1.19703 1.51120 1.54821 1.67615 1.85725 1.88040 2.96302 3.07530 3.10842 3.24610 3.27493 3.45073 3.56777 3.66412 3.74850 3.78722 3.92719 3.95801 4.04117 4.12219 4.19451 4.23655 4.31332 4.35391 4.44281 4.49324 4.51501 4.62429 4.63435 4.66389 4.72427 4.88118 4.97559 4.99035 5.05596 5.08038 5.13281 5.15984 5.23558 5.27912 5.39852 5.86228 6.10435 6.35710 6.37736 7.29097 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.002460 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.193698 B =11378.417458 C =12296.645572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.153 0.847 7 C -0.133 4.133 8 C -0.128 4.128 9 C 0.154 3.846 10 H 0.081 0.919 11 N -0.698 5.698 12 C 0.552 3.448 13 N -0.594 5.594 14 C 0.265 3.735 15 C -0.101 4.101 16 C -0.204 4.204 17 S 0.224 5.776 18 C -0.248 4.248 19 C -0.035 4.035 20 O -0.543 6.543 21 Si 0.716 3.284 22 C -0.076 4.076 23 C -0.284 4.284 24 C 0.190 3.810 25 N -0.578 5.578 26 C -0.129 4.129 27 C -0.134 4.134 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.413 0.587 33 H 0.197 0.803 34 H 0.132 0.868 35 H 0.387 0.613 36 H -0.279 1.279 37 H -0.256 1.256 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.201 0.799 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.095 0.905 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.473 23.371 25.451 38.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.274 0.726 5 C -0.054 4.054 6 H 0.170 0.830 7 C -0.172 4.172 8 C -0.167 4.167 9 C 0.050 3.950 10 H 0.099 0.901 11 N -0.335 5.335 12 C 0.194 3.806 13 N -0.318 5.318 14 C 0.118 3.882 15 C -0.116 4.116 16 C -0.344 4.344 17 S 0.491 5.509 18 C -0.365 4.365 19 C -0.147 4.147 20 O -0.351 6.351 21 Si 0.618 3.382 22 C -0.106 4.106 23 C -0.310 4.310 24 C 0.024 3.976 25 N -0.302 5.302 26 C -0.169 4.169 27 C -0.172 4.172 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.250 0.750 33 H 0.214 0.786 34 H 0.149 0.851 35 H 0.237 0.763 36 H -0.205 1.205 37 H -0.181 1.181 38 H 0.156 0.844 39 H 0.183 0.817 40 H 0.218 0.782 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.290 22.766 23.975 36.857 hybrid contribution 1.045 -0.678 0.652 1.406 sum 17.335 22.088 24.627 37.348 Atomic orbital electron populations 1.42222 1.22095 1.20897 1.16639 0.71737 0.71833 0.72642 1.22835 0.96352 0.95984 0.90208 0.82979 1.21940 1.03730 0.92604 0.98877 1.21741 0.92104 1.02348 1.00477 1.21241 0.94528 0.92365 0.86854 0.90088 1.44355 1.12466 1.58456 1.18254 1.19555 0.88444 0.87724 0.84839 1.67834 1.17630 1.17156 1.29160 1.19622 0.87842 0.88619 0.92144 1.17531 0.95315 1.04863 0.93882 1.25658 1.00966 1.03221 1.04505 1.83288 1.12882 1.51342 1.03417 1.24913 1.00291 1.09467 1.01812 1.24496 0.94556 1.00179 0.95433 1.86599 1.32858 1.30922 1.84763 0.94489 0.82635 0.83489 0.77601 1.20076 1.00796 0.98429 0.91325 1.22749 1.04374 1.08809 0.95036 1.23419 0.89606 0.86387 0.98153 1.67950 1.08411 1.26748 1.27077 1.21845 1.00835 0.94741 0.99432 1.21931 0.92531 1.03699 0.99049 0.88524 0.86722 0.91686 0.89845 0.75005 0.78580 0.85053 0.76318 1.20520 1.18142 0.84428 0.81729 0.78248 0.91192 0.93528 0.88642 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.10 4.15 -168.69 -0.70 46.40 16 2 H 0.45 -36.16 8.96 -89.70 -0.80 -36.97 16 3 H 0.45 -35.87 8.96 -89.69 -0.80 -36.68 16 4 H 0.44 -34.76 8.90 -89.69 -0.80 -35.56 16 5 C 0.05 -3.29 3.02 44.91 0.14 -3.16 16 6 H 0.15 -9.71 8.14 -2.39 -0.02 -9.73 16 7 C -0.13 7.31 5.43 30.59 0.17 7.48 16 8 C -0.13 5.31 5.39 30.59 0.16 5.47 16 9 C 0.15 -5.23 2.44 44.99 0.11 -5.12 16 10 H 0.08 -2.49 7.50 -2.39 -0.02 -2.51 16 11 N -0.70 16.22 5.22 -330.51 -1.73 14.50 16 12 C 0.55 -8.30 8.40 261.53 2.20 -6.11 16 13 N -0.59 6.08 9.99 -187.07 -1.87 4.21 16 14 C 0.27 -2.98 6.78 41.94 0.28 -2.70 16 15 C -0.10 1.17 5.79 -21.17 -0.12 1.04 16 16 C -0.20 3.20 10.26 66.98 0.69 3.88 16 17 S 0.22 -3.43 20.33 -56.49 -1.15 -4.58 16 18 C -0.25 3.05 5.68 24.54 0.14 3.19 16 19 C -0.03 0.43 2.96 71.24 0.21 0.64 16 20 O -0.54 4.92 12.88 -148.98 -1.92 3.00 16 21 Si 0.72 -9.24 30.97 68.60 2.12 -7.11 16 22 C -0.08 0.76 9.69 21.46 0.21 0.97 16 23 C -0.28 4.68 9.58 22.66 0.22 4.90 16 24 C 0.19 -3.56 11.28 84.60 0.95 -2.60 16 25 N -0.58 9.83 9.19 -198.25 -1.82 8.01 16 26 C -0.13 4.90 5.51 30.61 0.17 5.07 16 27 C -0.13 7.07 5.43 30.61 0.17 7.24 16 28 H 0.10 -5.31 8.14 -2.39 -0.02 -5.33 16 29 H 0.11 -6.63 8.14 -2.38 -0.02 -6.65 16 30 H 0.06 -2.31 8.14 -2.39 -0.02 -2.32 16 31 H 0.08 -3.47 8.14 -2.39 -0.02 -3.49 16 32 H 0.41 -9.69 8.72 -92.70 -0.81 -10.50 16 33 H 0.20 -4.20 6.84 -2.91 -0.02 -4.22 16 34 H 0.13 -1.83 7.96 -2.39 -0.02 -1.85 16 35 H 0.39 -5.64 8.70 -74.06 -0.64 -6.29 16 36 H -0.28 1.50 7.11 99.48 0.71 2.21 16 37 H -0.26 2.57 7.11 99.48 0.71 3.28 16 38 H 0.14 -1.09 7.96 -2.91 -0.02 -1.11 16 39 H 0.17 -3.57 6.71 -2.91 -0.02 -3.59 16 40 H 0.20 -5.21 8.06 -2.91 -0.02 -5.23 16 41 H 0.07 -2.59 8.14 -2.39 -0.02 -2.61 16 42 H 0.05 -1.33 8.14 -2.39 -0.02 -1.35 16 43 H 0.10 -5.05 8.14 -2.39 -0.02 -5.07 16 44 H 0.11 -5.79 8.14 -2.38 -0.02 -5.81 16 Total: 1.00 -92.63 367.16 -4.12 -96.75 By element: Atomic # 1 Polarization: -178.63 SS G_CDS: -2.74 Total: -181.38 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 5.69 Total: 20.20 kcal Atomic # 7 Polarization: 79.24 SS G_CDS: -6.12 Total: 73.12 kcal Atomic # 8 Polarization: 4.92 SS G_CDS: -1.92 Total: 3.00 kcal Atomic # 14 Polarization: -9.24 SS G_CDS: 2.12 Total: -7.11 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.15 Total: -4.58 kcal Total: -92.63 -4.12 -96.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17085550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.686 kcal (2) G-P(sol) polarization free energy of solvation -92.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds