Wall clock time and date at job start Mon Mar 8 2021 09:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00898 * 109.47614 * 1 2 4 4 H 1.00901 * 109.47494 * 239.99894 * 1 2 3 5 5 C 1.46899 * 109.46870 * 120.00192 * 1 2 3 6 6 H 1.09002 * 109.47496 * 299.99692 * 5 1 2 7 7 C 1.53002 * 109.47394 * 60.00030 * 5 1 2 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 1 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 12 12 C 1.38007 * 120.00068 * 154.99525 * 11 9 8 13 13 N 1.33102 * 120.03501 * 359.73456 * 12 11 9 14 14 C 1.32174 * 120.13559 * 179.76309 * 13 12 11 15 15 N 1.32093 * 120.20601 * 0.50808 * 14 13 12 16 16 C 1.33326 * 120.05924 * 359.74025 * 15 14 13 17 17 C 1.47909 * 120.06478 * 179.97438 * 16 15 14 18 18 C 1.34674 * 122.88135 * 180.02562 * 17 16 15 19 19 S 1.70627 * 110.49274 * 179.97438 * 18 17 16 20 20 C 1.75720 * 91.71904 * 0.02562 * 19 18 17 21 21 C 1.50707 * 125.09719 * 180.02562 * 20 19 18 22 22 O 1.42900 * 109.47178 * 245.02330 * 21 20 19 23 23 Si 1.86295 * 109.47235 * 5.02423 * 21 20 19 24 24 C 1.33069 * 109.80831 * 359.74742 * 20 19 18 25 25 N 1.32840 * 120.03100 * 180.02562 * 12 11 9 26 26 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 27 27 C 1.52997 * 109.47254 * 179.97438 * 5 1 2 28 28 H 1.08992 * 109.47063 * 59.99965 * 7 5 1 29 29 H 1.09004 * 109.46733 * 299.99678 * 7 5 1 30 30 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 31 31 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99491 * 335.00093 * 11 9 8 33 33 H 1.08005 * 119.89598 * 180.27344 * 14 13 12 34 34 H 1.07992 * 124.75360 * 359.97438 * 18 17 16 35 35 H 1.09000 * 109.47279 * 125.02728 * 21 20 19 36 36 H 0.96700 * 114.00341 * 179.97438 * 22 21 20 37 37 H 1.48503 * 110.00063 * 300.00056 * 23 21 20 38 38 H 1.48503 * 110.00140 * 61.31974 * 23 21 20 39 39 H 1.07995 * 123.12537 * 180.22548 * 24 20 19 40 40 H 1.09000 * 109.47486 * 180.02562 * 26 9 8 41 41 H 1.09002 * 109.46716 * 60.00091 * 26 9 8 42 42 H 1.09002 * 109.47153 * 300.00004 * 27 5 1 43 43 H 1.09001 * 109.47289 * 60.00087 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4896 -0.6925 -1.1994 6 1 -0.1263 -0.1787 -2.0895 7 6 0.0204 -2.1351 -1.1994 8 6 -0.4890 -2.8561 -2.4490 9 6 -2.0190 -2.8562 -2.4496 10 1 -2.3827 -3.3702 -1.5598 11 7 -2.5069 -3.5472 -3.6458 12 6 -3.7581 -4.1295 -3.6442 13 7 -4.5200 -4.0683 -2.5546 14 6 -5.7206 -4.6212 -2.5524 15 7 -6.1665 -5.2458 -3.6275 16 6 -5.4080 -5.3162 -4.7217 17 6 -5.9070 -6.0161 -5.9255 18 6 -5.1891 -6.1216 -7.0600 19 16 -6.0632 -6.9886 -8.2415 20 6 -7.4263 -7.2012 -7.1531 21 6 -8.7014 -7.9289 -7.4932 22 8 -9.7927 -7.0064 -7.4860 23 14 -8.5471 -8.6950 -9.1843 24 6 -7.1614 -6.6287 -5.9814 25 7 -4.2009 -4.7566 -4.7283 26 6 -2.5291 -1.4138 -2.4496 27 6 -2.0196 -0.6931 -1.1992 28 1 -0.3429 -2.6488 -0.3095 29 1 1.1104 -2.1350 -1.1994 30 1 -0.1253 -2.3422 -3.3388 31 1 -0.1261 -3.8839 -2.4487 32 1 -1.9504 -3.5954 -4.4388 33 1 -6.3374 -4.5654 -1.6675 34 1 -4.1990 -5.7146 -7.2022 35 1 -8.8817 -8.7106 -6.7552 36 1 -10.6473 -7.4064 -7.6975 37 1 -8.3012 -7.6396 -10.1996 38 1 -7.4358 -9.6800 -9.1962 39 1 -7.8530 -6.6343 -5.1520 40 1 -3.6191 -1.4138 -2.4496 41 1 -2.1654 -0.8998 -3.3394 42 1 -2.3826 -1.2072 -0.3092 43 1 -2.3834 0.3344 -1.1990 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081484_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:56 Heat of formation + Delta-G solvation = 188.912383 kcal Electronic energy + Delta-G solvation = -25808.468108 eV Core-core repulsion = 22101.188929 eV Total energy + Delta-G solvation = -3707.279179 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.128 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.65615 -43.27409 -40.40288 -39.86127 -38.18664 -37.20940 -35.62993 -34.28451 -33.99087 -32.35256 -30.97872 -28.07302 -27.40735 -26.44386 -25.97392 -25.24616 -23.72029 -23.23223 -21.58092 -21.31158 -21.21392 -20.62181 -19.91574 -19.84650 -19.03650 -18.73530 -18.12316 -17.75881 -17.63799 -17.23983 -16.99490 -16.65652 -16.24781 -16.13968 -15.92895 -15.78316 -15.57306 -15.39487 -15.00379 -14.78860 -14.70580 -14.55342 -14.42012 -14.24267 -14.16171 -13.94839 -13.29894 -13.25381 -13.12316 -12.79449 -12.73986 -12.50502 -11.48343 -11.45574 -10.96893 -10.78279 -10.45383 -10.09983 -5.75884 -1.39003 -1.23544 -0.73552 -0.49406 -0.17769 0.14129 0.42254 0.64182 0.64685 0.70067 0.80286 0.94446 1.07649 1.35032 1.44465 1.55238 1.62860 1.80588 1.94723 2.00371 2.11196 2.12768 2.22197 2.24836 2.37236 2.40717 2.62571 2.73148 2.81799 2.82488 2.88656 3.12382 3.23244 3.26135 3.33036 3.47425 3.55371 3.62261 3.75064 3.84165 4.00944 4.27831 4.39762 4.54189 4.67719 4.74191 5.03637 5.33585 6.03102 6.48197 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.002255 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.473545 B =12416.152661 C =12923.069967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.437 0.563 3 H 0.437 0.563 4 H 0.434 0.566 5 C 0.023 3.977 6 H 0.143 0.857 7 C -0.136 4.136 8 C -0.129 4.129 9 C 0.156 3.844 10 H 0.101 0.899 11 N -0.687 5.687 12 C 0.602 3.398 13 N -0.616 5.616 14 C 0.387 3.613 15 N -0.581 5.581 16 C 0.476 3.524 17 C -0.085 4.085 18 C -0.176 4.176 19 S 0.189 5.811 20 C -0.199 4.199 21 C -0.032 4.032 22 O -0.543 6.543 23 Si 0.669 3.331 24 C -0.055 4.055 25 N -0.601 5.601 26 C -0.131 4.131 27 C -0.138 4.138 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.418 0.582 33 H 0.211 0.789 34 H 0.179 0.821 35 H 0.086 0.914 36 H 0.386 0.614 37 H -0.234 1.234 38 H -0.238 1.238 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.746 19.597 20.609 35.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.266 0.734 3 H 0.266 0.734 4 H 0.263 0.737 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.174 4.174 8 C -0.167 4.167 9 C 0.051 3.949 10 H 0.119 0.881 11 N -0.325 5.325 12 C 0.237 3.763 13 N -0.346 5.346 14 C 0.089 3.911 15 N -0.305 5.305 16 C 0.202 3.798 17 C -0.101 4.101 18 C -0.316 4.316 19 S 0.455 5.545 20 C -0.315 4.315 21 C -0.145 4.145 22 O -0.350 6.350 23 Si 0.568 3.432 24 C -0.085 4.085 25 N -0.329 5.329 26 C -0.170 4.170 27 C -0.176 4.176 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.257 0.743 33 H 0.227 0.773 34 H 0.196 0.804 35 H 0.104 0.896 36 H 0.235 0.765 37 H -0.157 1.157 38 H -0.162 1.162 39 H 0.178 0.822 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.037 19.405 18.508 34.709 hybrid contribution 0.320 0.920 2.008 2.232 sum 22.357 20.325 20.516 36.522 Atomic orbital electron populations 1.42641 1.21170 1.20718 1.18828 0.73445 0.73379 0.73733 1.23594 0.99749 0.97411 0.87282 0.83888 1.22000 1.02754 0.90845 1.01832 1.21776 0.94534 1.03062 0.97354 1.21011 0.92571 0.92131 0.89230 0.88099 1.43967 1.13472 1.57904 1.17163 1.19197 0.86887 0.85235 0.85027 1.68552 1.08907 1.28761 1.28371 1.25218 0.87597 0.82809 0.95474 1.69142 1.37180 1.22882 1.01323 1.20819 0.83427 0.85111 0.90477 1.16938 0.95920 1.05791 0.91469 1.25540 1.05435 1.03241 0.97429 1.83472 1.06857 1.48988 1.15165 1.23542 1.00230 1.10177 0.97587 1.23939 0.84950 0.94325 1.11318 1.86505 1.17833 1.36627 1.94035 0.94544 0.88878 0.82874 0.76871 1.20060 0.95078 0.95323 0.98000 1.68512 1.17477 1.17825 1.29104 1.21968 1.03561 0.95106 0.96383 1.22047 0.89176 1.04046 1.02328 0.88842 0.88585 0.89819 0.88742 0.74330 0.77252 0.80387 0.89618 0.76550 1.15726 1.16212 0.82225 0.89051 0.90476 0.88860 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 24.02 4.15 -4.67 -0.02 24.01 16 2 H 0.44 -17.21 8.96 -39.29 -0.35 -17.56 16 3 H 0.44 -17.14 8.96 -39.29 -0.35 -17.49 16 4 H 0.43 -16.81 8.90 -39.29 -0.35 -17.16 16 5 C 0.02 -0.74 3.02 -67.71 -0.20 -0.95 16 6 H 0.14 -4.55 8.14 -51.93 -0.42 -4.97 16 7 C -0.14 3.82 5.43 -26.73 -0.15 3.68 16 8 C -0.13 2.93 5.39 -26.73 -0.14 2.78 16 9 C 0.16 -3.03 2.46 -67.93 -0.17 -3.20 16 10 H 0.10 -1.82 7.53 -51.93 -0.39 -2.21 16 11 N -0.69 9.96 5.21 -55.67 -0.29 9.67 16 12 C 0.60 -5.82 8.45 -322.15 -2.72 -8.54 16 13 N -0.62 6.16 9.34 -15.38 -0.14 6.02 16 14 C 0.39 -3.46 12.39 -91.57 -1.13 -4.60 16 15 N -0.58 3.44 9.99 -12.57 -0.13 3.32 16 16 C 0.48 -2.50 7.61 -156.09 -1.19 -3.69 16 17 C -0.08 0.41 5.80 -106.65 -0.62 -0.21 16 18 C -0.18 1.04 10.45 29.47 0.31 1.35 16 19 S 0.19 -1.03 20.33 -107.50 -2.19 -3.21 16 20 C -0.20 0.97 5.71 -36.10 -0.21 0.76 16 21 C -0.03 0.22 2.95 36.01 0.11 0.32 16 22 O -0.54 3.44 12.86 -35.23 -0.45 2.99 16 23 Si 0.67 -4.95 30.97 -169.99 -5.26 -10.21 16 24 C -0.06 0.26 9.68 -40.83 -0.40 -0.14 16 25 N -0.60 4.10 10.00 -11.94 -0.12 3.98 16 26 C -0.13 2.75 5.51 -26.71 -0.15 2.60 16 27 C -0.14 3.74 5.43 -26.71 -0.15 3.60 16 28 H 0.09 -2.63 8.14 -51.93 -0.42 -3.05 16 29 H 0.10 -2.78 8.14 -51.93 -0.42 -3.20 16 30 H 0.08 -1.91 8.14 -51.93 -0.42 -2.33 16 31 H 0.09 -1.93 8.14 -51.93 -0.42 -2.36 16 32 H 0.42 -6.33 8.72 -40.82 -0.36 -6.68 16 33 H 0.21 -2.65 8.06 -52.48 -0.42 -3.08 16 34 H 0.18 -1.35 7.93 -52.49 -0.42 -1.76 16 35 H 0.09 -0.73 7.96 -51.93 -0.41 -1.15 16 36 H 0.39 -4.33 8.74 45.56 0.40 -3.93 16 37 H -0.23 1.07 7.11 56.52 0.40 1.47 16 38 H -0.24 1.27 7.11 56.52 0.40 1.67 16 39 H 0.16 -0.79 7.94 -52.49 -0.42 -1.20 16 40 H 0.09 -1.56 8.14 -51.93 -0.42 -1.98 16 41 H 0.08 -1.59 8.14 -51.93 -0.42 -2.02 16 42 H 0.09 -2.54 8.14 -51.93 -0.42 -2.96 16 43 H 0.09 -2.57 8.14 -51.93 -0.42 -2.99 16 LS Contribution 364.35 15.07 5.49 5.49 Total: 1.00 -43.12 364.35 -15.99 -59.11 By element: Atomic # 1 Polarization: -88.87 SS G_CDS: -6.07 Total: -94.94 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -6.81 Total: -6.22 kcal Atomic # 7 Polarization: 47.69 SS G_CDS: -0.70 Total: 47.00 kcal Atomic # 8 Polarization: 3.44 SS G_CDS: -0.45 Total: 2.99 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: -5.26 Total: -10.21 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.19 Total: -3.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -43.12 -15.99 -59.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.019 kcal (2) G-P(sol) polarization free energy of solvation -43.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds