Wall clock time and date at job start Mon Mar 8 2021 09:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00898 * 109.47614 * 1 2 4 4 H 1.00901 * 109.47494 * 239.99894 * 1 2 3 5 5 C 1.46899 * 109.46870 * 120.00192 * 1 2 3 6 6 H 1.09002 * 109.47496 * 299.99692 * 5 1 2 7 7 C 1.53002 * 109.47394 * 60.00030 * 5 1 2 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 1 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 12 12 C 1.38007 * 120.00068 * 154.99525 * 11 9 8 13 13 N 1.33102 * 120.03501 * 359.73456 * 12 11 9 14 14 C 1.32174 * 120.13559 * 179.76309 * 13 12 11 15 15 N 1.32093 * 120.20601 * 0.50808 * 14 13 12 16 16 C 1.33326 * 120.05924 * 359.74025 * 15 14 13 17 17 C 1.47909 * 120.06478 * 179.97438 * 16 15 14 18 18 C 1.34674 * 122.88135 * 180.02562 * 17 16 15 19 19 S 1.70627 * 110.49274 * 179.97438 * 18 17 16 20 20 C 1.75720 * 91.71904 * 0.02562 * 19 18 17 21 21 C 1.50707 * 125.09719 * 180.02562 * 20 19 18 22 22 O 1.42900 * 109.47178 * 245.02330 * 21 20 19 23 23 Si 1.86295 * 109.47235 * 5.02423 * 21 20 19 24 24 C 1.33069 * 109.80831 * 359.74742 * 20 19 18 25 25 N 1.32840 * 120.03100 * 180.02562 * 12 11 9 26 26 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 27 27 C 1.52997 * 109.47254 * 179.97438 * 5 1 2 28 28 H 1.08992 * 109.47063 * 59.99965 * 7 5 1 29 29 H 1.09004 * 109.46733 * 299.99678 * 7 5 1 30 30 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 31 31 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99491 * 335.00093 * 11 9 8 33 33 H 1.08005 * 119.89598 * 180.27344 * 14 13 12 34 34 H 1.07992 * 124.75360 * 359.97438 * 18 17 16 35 35 H 1.09000 * 109.47279 * 125.02728 * 21 20 19 36 36 H 0.96700 * 114.00341 * 179.97438 * 22 21 20 37 37 H 1.48503 * 110.00063 * 300.00056 * 23 21 20 38 38 H 1.48503 * 110.00140 * 61.31974 * 23 21 20 39 39 H 1.07995 * 123.12537 * 180.22548 * 24 20 19 40 40 H 1.09000 * 109.47486 * 180.02562 * 26 9 8 41 41 H 1.09002 * 109.46716 * 60.00091 * 26 9 8 42 42 H 1.09002 * 109.47153 * 300.00004 * 27 5 1 43 43 H 1.09001 * 109.47289 * 60.00087 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4896 -0.6925 -1.1994 6 1 -0.1263 -0.1787 -2.0895 7 6 0.0204 -2.1351 -1.1994 8 6 -0.4890 -2.8561 -2.4490 9 6 -2.0190 -2.8562 -2.4496 10 1 -2.3827 -3.3702 -1.5598 11 7 -2.5069 -3.5472 -3.6458 12 6 -3.7581 -4.1295 -3.6442 13 7 -4.5200 -4.0683 -2.5546 14 6 -5.7206 -4.6212 -2.5524 15 7 -6.1665 -5.2458 -3.6275 16 6 -5.4080 -5.3162 -4.7217 17 6 -5.9070 -6.0161 -5.9255 18 6 -5.1891 -6.1216 -7.0600 19 16 -6.0632 -6.9886 -8.2415 20 6 -7.4263 -7.2012 -7.1531 21 6 -8.7014 -7.9289 -7.4932 22 8 -9.7927 -7.0064 -7.4860 23 14 -8.5471 -8.6950 -9.1843 24 6 -7.1614 -6.6287 -5.9814 25 7 -4.2009 -4.7566 -4.7283 26 6 -2.5291 -1.4138 -2.4496 27 6 -2.0196 -0.6931 -1.1992 28 1 -0.3429 -2.6488 -0.3095 29 1 1.1104 -2.1350 -1.1994 30 1 -0.1253 -2.3422 -3.3388 31 1 -0.1261 -3.8839 -2.4487 32 1 -1.9504 -3.5954 -4.4388 33 1 -6.3374 -4.5654 -1.6675 34 1 -4.1990 -5.7146 -7.2022 35 1 -8.8817 -8.7106 -6.7552 36 1 -10.6473 -7.4064 -7.6975 37 1 -8.3012 -7.6396 -10.1996 38 1 -7.4358 -9.6800 -9.1962 39 1 -7.8530 -6.6343 -5.1520 40 1 -3.6191 -1.4138 -2.4496 41 1 -2.1654 -0.8998 -3.3394 42 1 -2.3826 -1.2072 -0.3092 43 1 -2.3834 0.3344 -1.1990 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:56 Heat of formation + Delta-G solvation = 157.745018 kcal Electronic energy + Delta-G solvation = -25809.819626 eV Core-core repulsion = 22101.188929 eV Total energy + Delta-G solvation = -3708.630697 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75212 -41.13805 -39.64536 -38.38201 -37.58728 -35.79285 -34.94010 -33.11027 -32.04415 -31.83640 -29.23142 -27.51456 -26.77500 -25.39601 -24.11559 -23.66823 -22.58567 -21.54655 -20.83829 -19.98369 -19.08357 -18.64258 -18.44820 -18.33592 -18.05321 -17.48328 -17.01395 -16.91075 -16.61372 -16.06597 -15.59637 -15.44090 -15.31159 -15.05282 -15.00260 -14.51932 -14.26776 -14.23025 -13.97862 -13.87167 -13.69863 -13.44653 -12.96443 -12.81557 -12.72947 -12.42207 -12.30782 -12.29097 -12.17220 -12.07723 -11.61985 -11.44121 -10.83134 -10.78280 -10.43051 -10.00159 -9.78432 -9.63558 -5.21228 -0.84105 -0.05208 0.04272 0.26949 0.57794 1.17658 1.42268 1.44282 1.58733 1.64513 1.86864 2.48088 2.80720 2.84518 3.08064 3.20013 3.24401 3.42305 3.59778 3.67830 3.79231 3.84464 3.90669 3.96458 4.07807 4.11721 4.18374 4.23162 4.32461 4.43133 4.46991 4.53035 4.61120 4.67576 4.72661 4.80158 4.90580 4.95371 4.97074 5.03265 5.04929 5.07662 5.17588 5.27348 5.32266 5.46866 5.89127 6.27727 6.84371 7.18875 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.002255 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.473545 B =12416.152661 C =12923.069967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.153 0.847 7 C -0.134 4.134 8 C -0.127 4.127 9 C 0.148 3.852 10 H 0.087 0.913 11 N -0.675 5.675 12 C 0.587 3.413 13 N -0.606 5.606 14 C 0.379 3.621 15 N -0.608 5.608 16 C 0.457 3.543 17 C -0.096 4.096 18 C -0.172 4.172 19 S 0.174 5.826 20 C -0.212 4.212 21 C -0.038 4.038 22 O -0.562 6.562 23 Si 0.747 3.253 24 C -0.063 4.063 25 N -0.619 5.619 26 C -0.130 4.130 27 C -0.134 4.134 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.420 0.580 33 H 0.241 0.759 34 H 0.189 0.811 35 H 0.106 0.894 36 H 0.406 0.594 37 H -0.275 1.275 38 H -0.267 1.267 39 H 0.158 0.842 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.598 21.480 22.808 38.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.274 0.726 5 C -0.054 4.054 6 H 0.171 0.829 7 C -0.172 4.172 8 C -0.166 4.166 9 C 0.044 3.956 10 H 0.105 0.895 11 N -0.312 5.312 12 C 0.221 3.779 13 N -0.336 5.336 14 C 0.082 3.918 15 N -0.334 5.334 16 C 0.181 3.819 17 C -0.113 4.113 18 C -0.312 4.312 19 S 0.440 5.560 20 C -0.328 4.328 21 C -0.151 4.151 22 O -0.373 6.373 23 Si 0.650 3.350 24 C -0.093 4.093 25 N -0.349 5.349 26 C -0.169 4.169 27 C -0.173 4.173 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.258 0.742 33 H 0.257 0.743 34 H 0.207 0.793 35 H 0.124 0.876 36 H 0.258 0.742 37 H -0.201 1.201 38 H -0.193 1.193 39 H 0.175 0.825 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 23.932 21.335 20.772 38.202 hybrid contribution -0.173 0.401 1.363 1.431 sum 23.759 21.735 22.135 39.075 Atomic orbital electron populations 1.42223 1.22122 1.20916 1.16655 0.71708 0.71840 0.72634 1.22849 0.96260 0.96065 0.90254 0.82893 1.21951 1.03857 0.92522 0.98873 1.21750 0.91467 1.02662 1.00696 1.21430 0.95070 0.92528 0.86558 0.89536 1.44461 1.11548 1.56379 1.18785 1.19703 0.88327 0.85225 0.84599 1.68669 1.08600 1.28375 1.27948 1.25903 0.88225 0.82046 0.95665 1.69130 1.37848 1.24445 1.01959 1.20846 0.84327 0.85992 0.90746 1.17153 0.96071 1.05910 0.92134 1.25616 1.05720 1.02962 0.96931 1.83444 1.07313 1.49603 1.15636 1.23875 1.01080 1.10346 0.97497 1.24102 0.84265 0.94361 1.12355 1.86458 1.19043 1.37544 1.94209 0.93721 0.87165 0.79749 0.74344 1.20111 0.95297 0.95788 0.98110 1.68515 1.17208 1.18795 1.30395 1.21853 1.00849 0.94479 0.99764 1.21934 0.92621 1.03737 0.98966 0.88450 0.86564 0.89488 0.91324 0.74179 0.74283 0.79349 0.87621 0.74218 1.20118 1.19281 0.82475 0.93547 0.90846 0.88532 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.75 4.15 -168.68 -0.70 47.05 16 2 H 0.45 -36.61 8.96 -89.70 -0.80 -37.42 16 3 H 0.45 -36.23 8.96 -89.70 -0.80 -37.03 16 4 H 0.44 -35.17 8.90 -89.69 -0.80 -35.97 16 5 C 0.05 -3.33 3.02 44.92 0.14 -3.20 16 6 H 0.15 -10.00 8.14 -2.39 -0.02 -10.02 16 7 C -0.13 7.58 5.43 30.60 0.17 7.75 16 8 C -0.13 5.57 5.39 30.59 0.16 5.74 16 9 C 0.15 -5.33 2.46 44.99 0.11 -5.22 16 10 H 0.09 -2.86 7.53 -2.39 -0.02 -2.88 16 11 N -0.67 17.29 5.21 -330.05 -1.72 15.58 16 12 C 0.59 -9.24 8.45 261.26 2.21 -7.03 16 13 N -0.61 10.18 9.34 -202.58 -1.89 8.29 16 14 C 0.38 -5.68 12.39 180.68 2.24 -3.44 16 15 N -0.61 5.09 9.99 -193.67 -1.93 3.15 16 16 C 0.46 -3.05 7.61 137.05 1.04 -2.00 16 17 C -0.10 0.59 5.80 -21.18 -0.12 0.46 16 18 C -0.17 1.45 10.45 67.00 0.70 2.15 16 19 S 0.17 -1.36 20.33 -56.49 -1.15 -2.50 16 20 C -0.21 1.48 5.71 24.53 0.14 1.62 16 21 C -0.04 0.46 2.95 71.24 0.21 0.67 16 22 O -0.56 6.35 12.86 -148.98 -1.92 4.43 16 23 Si 0.75 -9.72 30.97 68.60 2.12 -7.60 16 24 C -0.06 0.38 9.68 21.47 0.21 0.59 16 25 N -0.62 6.10 10.00 -191.70 -1.92 4.18 16 26 C -0.13 5.16 5.51 30.61 0.17 5.33 16 27 C -0.13 7.28 5.43 30.61 0.17 7.44 16 28 H 0.10 -5.51 8.14 -2.39 -0.02 -5.53 16 29 H 0.12 -6.92 8.14 -2.39 -0.02 -6.94 16 30 H 0.09 -3.85 8.14 -2.39 -0.02 -3.87 16 31 H 0.07 -2.62 8.14 -2.39 -0.02 -2.64 16 32 H 0.42 -11.28 8.72 -92.71 -0.81 -12.09 16 33 H 0.24 -5.59 8.06 -2.91 -0.02 -5.61 16 34 H 0.19 -2.22 7.93 -2.91 -0.02 -2.24 16 35 H 0.11 -1.71 7.96 -2.39 -0.02 -1.73 16 36 H 0.41 -8.81 8.74 -74.06 -0.65 -9.45 16 37 H -0.28 1.74 7.11 99.48 0.71 2.44 16 38 H -0.27 2.26 7.11 99.48 0.71 2.96 16 39 H 0.16 -1.00 7.94 -2.91 -0.02 -1.02 16 40 H 0.05 -1.39 8.14 -2.39 -0.02 -1.41 16 41 H 0.07 -2.87 8.14 -2.39 -0.02 -2.89 16 42 H 0.10 -5.24 8.14 -2.39 -0.02 -5.26 16 43 H 0.11 -5.90 8.14 -2.39 -0.02 -5.92 16 Total: 1.00 -96.79 364.35 -4.29 -101.08 By element: Atomic # 1 Polarization: -181.77 SS G_CDS: -2.73 Total: -184.50 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 7.54 Total: 10.85 kcal Atomic # 7 Polarization: 86.41 SS G_CDS: -8.16 Total: 78.24 kcal Atomic # 8 Polarization: 6.35 SS G_CDS: -1.92 Total: 4.43 kcal Atomic # 14 Polarization: -9.72 SS G_CDS: 2.12 Total: -7.60 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.15 Total: -2.50 kcal Total: -96.79 -4.29 -101.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.829 kcal (2) G-P(sol) polarization free energy of solvation -96.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds