Wall clock time and date at job start Mon Mar 8 2021 09:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00906 * 109.47114 * 1 2 4 4 H 1.00902 * 109.47309 * 240.00643 * 1 2 3 5 5 C 1.46901 * 109.47628 * 120.00217 * 1 2 3 6 6 H 1.09001 * 109.46874 * 300.00124 * 5 1 2 7 7 C 1.53000 * 109.46769 * 59.99844 * 5 1 2 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 5 1 9 9 C 1.53006 * 109.47127 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 12 12 C 1.34773 * 120.00111 * 84.99828 * 11 9 8 13 13 O 1.21544 * 120.00128 * 0.02562 * 12 11 9 14 14 C 1.47886 * 119.99824 * 179.97438 * 12 11 9 15 15 C 1.39997 * 120.06312 * 179.97438 * 14 12 11 16 16 C 1.38360 * 118.02691 * 179.97438 * 15 14 12 17 17 C 1.39869 * 118.00899 * 0.02562 * 16 15 14 18 18 C 1.47961 * 120.08091 * 180.02562 * 17 16 15 19 19 C 1.34648 * 122.88075 * 5.02128 * 18 17 16 20 20 S 1.70633 * 110.50429 * 180.02562 * 19 18 17 21 21 C 1.75726 * 91.71151 * 0.02562 * 20 19 18 22 22 C 1.50700 * 125.10438 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.47517 * 244.97948 * 22 21 20 24 24 Si 1.86300 * 109.46828 * 4.98005 * 22 21 20 25 25 C 1.33098 * 109.79737 * 359.73004 * 21 20 19 26 26 N 1.33158 * 119.83615 * 0.02562 * 17 16 15 27 27 N 1.28356 * 122.11326 * 359.73084 * 26 17 16 28 28 C 1.52997 * 109.47164 * 59.99836 * 9 8 7 29 29 C 1.52996 * 109.47195 * 179.97438 * 5 1 2 30 30 H 1.09002 * 109.47398 * 300.00295 * 7 5 1 31 31 H 1.09001 * 109.47194 * 60.00475 * 7 5 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 8 7 5 33 33 H 1.08996 * 109.47853 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99624 * 264.99510 * 11 9 8 35 35 H 1.08003 * 120.98478 * 359.95779 * 15 14 12 36 36 H 1.08003 * 120.99822 * 180.02562 * 16 15 14 37 37 H 1.08003 * 124.74963 * 359.97438 * 19 18 17 38 38 H 1.09005 * 109.46837 * 124.97328 * 22 21 20 39 39 H 0.96698 * 113.99854 * 180.02562 * 23 22 21 40 40 H 1.48498 * 110.00313 * 178.67792 * 24 22 21 41 41 H 1.48500 * 109.99863 * 299.99979 * 24 22 21 42 42 H 1.08000 * 123.13219 * 180.26442 * 25 21 20 43 43 H 1.09002 * 109.47045 * 180.02562 * 28 9 8 44 44 H 1.09001 * 109.47375 * 59.99966 * 28 9 8 45 45 H 1.08992 * 109.47554 * 299.99900 * 29 5 1 46 46 H 1.09004 * 109.47108 * 60.00150 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9514 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4898 -0.6925 -1.1994 6 1 -0.1265 -0.1787 -2.0894 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4893 -2.8562 -2.4488 9 6 -2.0194 -2.8561 -2.4493 10 1 -2.3831 -3.3700 -1.5595 11 7 -2.5073 -3.5471 -3.6455 12 6 -2.6360 -4.8887 -3.6432 13 8 -2.3478 -5.5253 -2.6487 14 6 -3.1290 -5.5862 -4.8505 15 6 -3.2628 -6.9798 -4.8499 16 6 -3.7283 -7.5887 -6.0017 17 6 -4.0363 -6.7747 -7.0966 18 6 -4.5382 -7.3776 -8.3511 19 6 -4.8136 -8.6901 -8.4723 20 16 -5.3693 -9.0412 -10.0469 21 6 -5.2159 -7.3595 -10.5330 22 6 -5.5447 -6.8194 -11.9009 23 8 -4.3521 -6.3339 -12.5207 24 14 -6.2786 -8.1769 -12.9447 25 6 -4.7709 -6.6334 -9.5102 26 7 -3.8768 -5.4557 -7.0071 27 7 -3.4492 -4.8912 -5.9366 28 6 -2.5293 -1.4136 -2.4494 29 6 -2.0198 -0.6930 -1.1990 30 1 1.1102 -2.1351 -1.1993 31 1 -0.3431 -2.6488 -0.3093 32 1 -0.1257 -2.3423 -3.3386 33 1 -0.1265 -3.8839 -2.4486 34 1 -2.7377 -3.0391 -4.4390 35 1 -3.0098 -7.5622 -3.9762 36 1 -3.8502 -8.6606 -6.0539 37 1 -4.6982 -9.4187 -7.6835 38 1 -6.2629 -6.0048 -11.8069 39 1 -4.4891 -5.9702 -13.4061 40 1 -6.6366 -7.6493 -14.2858 41 1 -5.3092 -9.2936 -13.0804 42 1 -4.6024 -5.5684 -9.5714 43 1 -3.6193 -1.4135 -2.4494 44 1 -2.1656 -0.8996 -3.3392 45 1 -2.3827 -1.2070 -0.3090 46 1 -2.3834 0.3346 -1.1988 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:35:14 Heat of formation + Delta-G solvation = 101.320224 kcal Electronic energy + Delta-G solvation = -28799.241056 eV Core-core repulsion = 24706.681174 eV Total energy + Delta-G solvation = -4092.559882 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45887 -41.39358 -40.36578 -39.42966 -37.80514 -37.46803 -34.85361 -34.40526 -33.79220 -32.02841 -31.50099 -29.51018 -27.55585 -26.78120 -25.64942 -24.23262 -23.84157 -22.96396 -22.01173 -21.55144 -20.71212 -19.71526 -18.92246 -18.63114 -18.48667 -18.32310 -18.21161 -17.57508 -17.28953 -17.02754 -16.80153 -16.27415 -16.09549 -15.80947 -15.70547 -15.15099 -15.12865 -14.88869 -14.43239 -14.23878 -14.16928 -14.10505 -13.87123 -13.76449 -13.68646 -13.38406 -13.03019 -12.91467 -12.77253 -12.50813 -12.41627 -12.27562 -11.79555 -11.71361 -11.58194 -11.54251 -11.47452 -11.35793 -11.03719 -10.61024 -10.28128 -9.88808 -9.35062 -5.08220 -1.08353 -0.44203 -0.08770 0.37787 0.69477 1.09692 1.20310 1.53558 1.54653 1.73370 1.81843 1.86062 2.50711 2.58342 3.01224 3.09382 3.22506 3.24765 3.36524 3.47776 3.61216 3.67958 3.70330 3.76540 3.79144 3.86990 3.93490 4.06593 4.08977 4.18718 4.31497 4.34467 4.41520 4.47289 4.50720 4.56653 4.56903 4.63343 4.68763 4.82404 4.85630 4.97095 5.00162 5.04602 5.06289 5.10006 5.15413 5.20408 5.22565 5.38375 6.17531 6.50024 6.83598 7.27352 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.001752 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.447056 B =15976.569879 C =16817.089973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.450 0.550 3 H 0.451 0.549 4 H 0.443 0.557 5 C 0.053 3.947 6 H 0.156 0.844 7 C -0.136 4.136 8 C -0.133 4.133 9 C 0.130 3.870 10 H 0.080 0.920 11 N -0.701 5.701 12 C 0.583 3.417 13 O -0.553 6.553 14 C -0.007 4.007 15 C -0.060 4.060 16 C -0.108 4.108 17 C 0.152 3.848 18 C -0.099 4.099 19 C -0.205 4.205 20 S 0.233 5.767 21 C -0.211 4.211 22 C -0.040 4.040 23 O -0.555 6.555 24 Si 0.711 3.289 25 C -0.082 4.082 26 N -0.262 5.262 27 N -0.213 5.213 28 C -0.127 4.127 29 C -0.136 4.136 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.417 0.583 35 H 0.180 0.820 36 H 0.193 0.807 37 H 0.206 0.794 38 H 0.105 0.895 39 H 0.398 0.602 40 H -0.261 1.261 41 H -0.273 1.273 42 H 0.143 0.857 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.817 24.518 29.074 40.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.282 0.718 3 H 0.283 0.717 4 H 0.273 0.727 5 C -0.053 4.053 6 H 0.173 0.827 7 C -0.174 4.174 8 C -0.173 4.173 9 C 0.027 3.973 10 H 0.098 0.902 11 N -0.352 5.352 12 C 0.366 3.634 13 O -0.430 6.430 14 C -0.154 4.154 15 C -0.089 4.089 16 C -0.137 4.137 17 C 0.009 3.991 18 C -0.115 4.115 19 C -0.344 4.344 20 S 0.501 5.499 21 C -0.328 4.328 22 C -0.152 4.152 23 O -0.366 6.366 24 Si 0.613 3.387 25 C -0.112 4.112 26 N -0.107 5.107 27 N -0.060 5.060 28 C -0.166 4.166 29 C -0.174 4.174 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.254 0.746 35 H 0.197 0.803 36 H 0.210 0.790 37 H 0.223 0.777 38 H 0.123 0.877 39 H 0.249 0.751 40 H -0.186 1.186 41 H -0.199 1.199 42 H 0.161 0.839 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.682 23.478 27.944 38.638 hybrid contribution 1.046 0.602 0.088 1.210 sum 13.728 24.080 28.032 39.422 Atomic orbital electron populations 1.42225 1.22104 1.20929 1.16631 0.71831 0.71667 0.72698 1.22845 0.96799 0.95383 0.90316 0.82677 1.21939 1.03517 0.93151 0.98841 1.21858 0.93934 1.01303 1.00160 1.21461 0.94690 0.93959 0.87191 0.90219 1.45966 1.65128 1.05529 1.18529 1.17464 0.77441 0.83381 0.85127 1.90813 1.51478 1.66918 1.33841 1.22973 1.02222 0.94227 0.95963 1.22606 0.92402 0.93900 0.99949 1.22743 0.95890 1.04015 0.91024 1.21304 0.92600 0.91342 0.93849 1.17275 1.08479 0.92942 0.92764 1.25750 1.04574 0.99392 1.04650 1.83310 1.59578 1.05112 1.01940 1.23910 1.11896 0.97813 0.99193 1.24192 0.90993 1.06477 0.93498 1.86554 1.32245 1.81719 1.36071 0.94594 0.85044 0.77239 0.81873 1.20138 0.98512 1.01621 0.90911 1.73332 1.11049 1.10139 1.16143 1.73092 1.05431 1.31912 0.95566 1.21765 1.02034 0.92067 1.00717 1.21979 0.92159 1.04340 0.98898 0.87385 0.88910 0.90139 0.93563 0.74565 0.80273 0.79028 0.77737 0.87730 0.75082 1.18585 1.19880 0.83936 0.91080 0.89254 0.88617 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.19 4.15 -168.68 -0.70 46.49 16 2 H 0.45 -35.89 8.96 -89.69 -0.80 -36.69 16 3 H 0.45 -36.32 8.96 -89.69 -0.80 -37.12 16 4 H 0.44 -34.66 8.90 -89.69 -0.80 -35.46 16 5 C 0.05 -3.33 3.02 44.91 0.14 -3.19 16 6 H 0.16 -10.02 8.14 -2.39 -0.02 -10.04 16 7 C -0.14 7.18 5.43 30.59 0.17 7.34 16 8 C -0.13 5.09 5.49 30.60 0.17 5.26 16 9 C 0.13 -4.45 2.45 44.99 0.11 -4.34 16 10 H 0.08 -2.44 7.57 -2.39 -0.02 -2.46 16 11 N -0.70 17.36 5.07 -445.36 -2.26 15.10 16 12 C 0.58 -9.60 7.77 86.80 0.67 -8.93 16 13 O -0.55 6.60 16.04 -3.85 -0.06 6.54 16 14 C -0.01 0.09 6.83 41.97 0.29 0.38 16 15 C -0.06 0.96 9.71 22.73 0.22 1.18 16 16 C -0.11 1.82 9.59 22.69 0.22 2.03 16 17 C 0.15 -1.69 6.82 41.92 0.29 -1.41 16 18 C -0.10 1.11 5.79 -21.17 -0.12 0.99 16 19 C -0.20 3.23 10.24 67.00 0.69 3.91 16 20 S 0.23 -3.23 20.33 -56.49 -1.15 -4.38 16 21 C -0.21 2.15 5.71 24.53 0.14 2.29 16 22 C -0.04 0.48 2.95 71.24 0.21 0.69 16 23 O -0.56 5.01 12.86 -148.98 -1.92 3.09 16 24 Si 0.71 -9.04 30.97 68.60 2.12 -6.91 16 25 C -0.08 0.71 9.68 21.47 0.21 0.92 16 26 N -0.26 2.05 11.02 -48.35 -0.53 1.51 16 27 N -0.21 2.31 10.73 -48.47 -0.52 1.79 16 28 C -0.13 5.41 5.40 30.61 0.17 5.57 16 29 C -0.14 7.51 5.43 30.61 0.17 7.68 16 30 H 0.11 -5.92 8.14 -2.39 -0.02 -5.94 16 31 H 0.09 -4.84 8.14 -2.39 -0.02 -4.86 16 32 H 0.08 -3.09 8.14 -2.39 -0.02 -3.11 16 33 H 0.05 -1.31 8.14 -2.39 -0.02 -1.33 16 34 H 0.42 -10.66 7.95 -92.71 -0.74 -11.39 16 35 H 0.18 -3.47 7.71 -2.91 -0.02 -3.49 16 36 H 0.19 -4.66 6.70 -2.91 -0.02 -4.68 16 37 H 0.21 -4.74 6.84 -2.91 -0.02 -4.76 16 38 H 0.11 -1.66 7.96 -2.38 -0.02 -1.68 16 39 H 0.40 -6.76 8.74 -74.06 -0.65 -7.41 16 40 H -0.26 2.31 7.11 99.48 0.71 3.02 16 41 H -0.27 1.75 7.11 99.48 0.71 2.46 16 42 H 0.14 -1.00 7.95 -2.91 -0.02 -1.03 16 43 H 0.07 -2.64 8.14 -2.39 -0.02 -2.66 16 44 H 0.09 -3.85 8.14 -2.39 -0.02 -3.87 16 45 H 0.10 -5.28 8.14 -2.39 -0.02 -5.30 16 46 H 0.12 -6.91 8.14 -2.38 -0.02 -6.93 16 Total: 1.00 -97.18 389.23 -3.97 -101.15 By element: Atomic # 1 Polarization: -182.07 SS G_CDS: -2.67 Total: -184.75 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 3.72 Total: 20.38 kcal Atomic # 7 Polarization: 68.90 SS G_CDS: -4.01 Total: 64.89 kcal Atomic # 8 Polarization: 11.61 SS G_CDS: -1.98 Total: 9.63 kcal Atomic # 14 Polarization: -9.04 SS G_CDS: 2.12 Total: -6.91 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.15 Total: -4.38 kcal Total: -97.18 -3.97 -101.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.465 kcal (2) G-P(sol) polarization free energy of solvation -97.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds