Wall clock time and date at job start Mon Mar 8 2021 09:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21556 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.47850 * 119.99807 * 179.97438 * 12 11 9 15 15 C 1.39511 * 119.97027 * 179.97438 * 14 12 11 16 16 N 1.31935 * 120.01591 * 180.02562 * 15 14 12 17 17 C 1.33079 * 119.96992 * 0.02562 * 16 15 14 18 18 C 1.47902 * 120.02658 * 180.02562 * 17 16 15 19 19 C 1.34705 * 122.88667 * 185.02234 * 18 17 16 20 20 S 1.70637 * 110.49558 * 179.97438 * 19 18 17 21 21 C 1.75723 * 91.71701 * 0.02562 * 20 19 18 22 22 C 1.50708 * 125.09178 * 180.02562 * 21 20 19 23 23 O 1.42900 * 109.46648 * 244.97247 * 22 21 20 24 24 Si 1.86294 * 109.47456 * 4.97367 * 22 21 20 25 25 C 1.33079 * 109.81398 * 359.72588 * 21 20 19 26 26 C 1.40113 * 119.94789 * 359.97438 * 17 16 15 27 27 N 1.31475 * 119.98070 * 359.73188 * 26 17 16 28 28 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 29 29 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 30 30 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 31 31 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 34 34 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 35 35 H 1.07995 * 119.98967 * 359.97438 * 15 14 12 36 36 H 1.07992 * 124.75331 * 359.96918 * 19 18 17 37 37 H 1.09006 * 109.46772 * 124.97902 * 22 21 20 38 38 H 0.96703 * 114.00181 * 60.00733 * 23 22 21 39 39 H 1.48495 * 110.00277 * 180.02562 * 24 22 21 40 40 H 1.48506 * 109.99801 * 301.32452 * 24 22 21 41 41 H 1.07997 * 123.12994 * 180.26403 * 25 21 20 42 42 H 1.07999 * 120.01216 * 179.97438 * 26 17 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 28 9 8 44 44 H 1.09004 * 109.47108 * 179.97438 * 28 9 8 45 45 H 1.09002 * 109.47045 * 60.00157 * 29 5 1 46 46 H 1.09001 * 109.47375 * 300.00082 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2266 -4.2625 -4.8352 14 6 -0.2813 -4.5805 -6.5919 15 6 0.4206 -5.6739 -7.1000 16 7 -0.0176 -6.2967 -8.1774 17 6 -1.1292 -5.8811 -8.7795 18 6 -1.6219 -6.5787 -9.9870 19 6 -2.6822 -6.1493 -10.6984 20 16 -2.9726 -7.1856 -12.0225 21 6 -1.6178 -8.2145 -11.5823 22 6 -1.1880 -9.4491 -12.3321 23 8 -1.3702 -10.5980 -11.5021 24 14 -2.2165 -9.6282 -13.8751 25 6 -1.0243 -7.7366 -10.4912 26 6 -1.8331 -4.7829 -8.2680 27 7 -1.3978 -4.1673 -7.1909 28 6 -0.4889 -2.8566 -2.4481 29 6 0.0202 -2.1351 -1.1992 30 1 1.1101 0.0286 -2.4487 31 1 -0.3431 1.0562 -2.4487 32 1 -0.1258 -0.1796 -4.5879 33 1 -1.5794 -0.6935 -3.6979 34 1 -1.2767 -2.5233 -5.3325 35 1 1.3233 -6.0101 -6.6117 36 1 -3.2666 -5.2721 -10.4635 37 1 -0.1363 -9.3609 -12.6046 38 1 -2.2846 -10.7390 -11.2208 39 1 -1.8028 -10.8424 -14.6232 40 1 -3.6554 -9.7173 -13.5188 41 1 -0.1627 -8.2022 -10.0360 42 1 -2.7351 -4.4445 -8.7561 43 1 -1.5789 -2.8569 -2.4481 44 1 -0.1256 -3.8843 -2.4480 45 1 -0.3430 -2.6488 -0.3091 46 1 1.1102 -2.1351 -1.1993 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081484_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:40:20 Heat of formation + Delta-G solvation = 125.875846 kcal Electronic energy + Delta-G solvation = -28782.688179 eV Core-core repulsion = 24691.193109 eV Total energy + Delta-G solvation = -4091.495070 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.59062 -43.17201 -41.59926 -40.12043 -39.22932 -38.29623 -36.52697 -35.71783 -34.10907 -33.98776 -32.04893 -31.12716 -28.06402 -27.80319 -26.22239 -26.13432 -25.55812 -24.04793 -23.45772 -22.92943 -21.50818 -21.34642 -21.20447 -20.28423 -20.02860 -19.84808 -19.24625 -18.49583 -18.13210 -17.96193 -17.74938 -17.47269 -17.19811 -16.93863 -16.89356 -16.46277 -16.22759 -16.13215 -15.97533 -15.58163 -15.37865 -15.28469 -14.81624 -14.69320 -14.62962 -14.54618 -14.51859 -14.22723 -14.19575 -13.63458 -13.52734 -13.26347 -13.21961 -13.15470 -12.88721 -12.46885 -12.22446 -11.68558 -11.40850 -11.32565 -11.07643 -10.53033 -9.94639 -5.59800 -1.86540 -1.21042 -0.89068 -0.71637 -0.24397 0.08685 0.46020 0.65180 0.66570 0.67374 0.74510 0.84320 1.00633 1.05474 1.40797 1.47350 1.57978 1.65811 1.85484 1.92082 1.96704 2.05897 2.12458 2.20729 2.33793 2.39073 2.40800 2.54303 2.68392 2.72200 2.80917 2.84346 2.90267 2.96976 3.11740 3.15043 3.17416 3.28765 3.32000 3.52825 3.59266 3.62805 3.74045 3.94011 4.11411 4.16797 4.39966 4.49804 4.61696 5.06364 5.25670 5.72754 5.77896 5.95959 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.001668 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.467093 B =16780.839459 C =17284.721255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.437 0.563 4 H 0.437 0.563 5 C 0.024 3.976 6 H 0.144 0.856 7 C -0.138 4.138 8 C -0.127 4.127 9 C 0.139 3.861 10 H 0.098 0.902 11 N -0.713 5.713 12 C 0.588 3.412 13 O -0.522 6.522 14 C -0.002 4.002 15 C 0.131 3.869 16 N -0.434 5.434 17 C 0.185 3.815 18 C -0.084 4.084 19 C -0.216 4.216 20 S 0.216 5.784 21 C -0.239 4.239 22 C -0.032 4.032 23 O -0.522 6.522 24 Si 0.648 3.352 25 C -0.067 4.067 26 C 0.059 3.941 27 N -0.406 5.406 28 C -0.132 4.132 29 C -0.139 4.139 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.129 0.871 38 H 0.377 0.623 39 H -0.232 1.232 40 H -0.238 1.238 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 26.816 30.590 40.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.265 0.735 4 H 0.266 0.734 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.176 4.176 8 C -0.166 4.166 9 C 0.034 3.966 10 H 0.116 0.884 11 N -0.365 5.365 12 C 0.372 3.628 13 O -0.397 6.397 14 C -0.142 4.142 15 C -0.030 4.030 16 N -0.148 5.148 17 C 0.043 3.957 18 C -0.100 4.100 19 C -0.355 4.355 20 S 0.484 5.516 21 C -0.356 4.356 22 C -0.145 4.145 23 O -0.328 6.328 24 Si 0.546 3.454 25 C -0.096 4.096 26 C -0.107 4.107 27 N -0.122 5.122 28 C -0.171 4.171 29 C -0.177 4.177 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.203 0.797 36 H 0.192 0.808 37 H 0.147 0.853 38 H 0.225 0.775 39 H -0.155 1.155 40 H -0.162 1.162 41 H 0.173 0.827 42 H 0.196 0.804 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.442 25.812 29.079 38.884 hybrid contribution 0.272 -0.037 2.265 2.281 sum -0.169 25.775 31.344 40.581 Atomic orbital electron populations 1.42645 1.21349 1.20672 1.18695 0.73735 0.73452 0.73392 1.23586 1.04461 0.95859 0.84068 0.83866 1.22019 1.03354 1.00184 0.92029 1.21765 1.02551 0.94450 0.97792 1.21053 1.00789 0.90385 0.84342 0.88425 1.45747 1.29871 1.31764 1.29104 1.17564 0.83000 0.79827 0.82365 1.90856 1.24003 1.65211 1.59610 1.21912 0.95227 0.98465 0.98572 1.23867 0.98893 0.89765 0.90439 1.68728 1.11290 1.27618 1.07150 1.20750 0.90276 0.91726 0.92945 1.17310 0.98206 0.98202 0.96315 1.25432 1.02146 1.06302 1.01635 1.83429 1.27834 1.16076 1.24307 1.24951 1.02696 1.04468 1.03468 1.24393 1.08378 0.81527 1.00170 1.86659 1.32983 1.44616 1.68573 0.95312 0.79405 0.90915 0.79783 1.20153 1.00607 0.94088 0.94730 1.23739 1.00800 0.93222 0.92892 1.68204 1.10193 1.26871 1.06945 1.21934 1.02171 1.01291 0.91713 1.22039 1.03331 0.90572 1.01788 0.88884 0.88582 0.88685 0.89758 0.74857 0.79713 0.80843 0.85335 0.77458 1.15496 1.16207 0.82654 0.80365 0.90227 0.88935 0.88829 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 23.96 4.15 -4.67 -0.02 23.94 16 2 H 0.43 -16.72 8.90 -39.29 -0.35 -17.07 16 3 H 0.44 -17.18 8.96 -39.29 -0.35 -17.54 16 4 H 0.44 -17.09 8.96 -39.29 -0.35 -17.45 16 5 C 0.02 -0.76 3.03 -67.71 -0.20 -0.97 16 6 H 0.14 -4.56 8.14 -51.93 -0.42 -4.98 16 7 C -0.14 3.85 5.43 -26.73 -0.15 3.71 16 8 C -0.13 2.89 5.39 -26.73 -0.14 2.75 16 9 C 0.14 -2.67 2.45 -67.93 -0.17 -2.84 16 10 H 0.10 -1.71 7.58 -51.93 -0.39 -2.11 16 11 N -0.71 10.67 5.07 -54.75 -0.28 10.39 16 12 C 0.59 -6.22 7.77 -12.32 -0.10 -6.31 16 13 O -0.52 4.21 15.99 5.32 0.09 4.29 16 14 C 0.00 0.02 6.75 -82.84 -0.56 -0.54 16 15 C 0.13 -1.01 10.76 -17.03 -0.18 -1.19 16 16 N -0.43 2.69 9.98 -9.29 -0.09 2.60 16 17 C 0.18 -1.37 6.75 -82.67 -0.56 -1.93 16 18 C -0.08 0.63 5.79 -106.64 -0.62 0.01 16 19 C -0.22 2.02 10.24 29.48 0.30 2.32 16 20 S 0.22 -1.88 20.33 -107.50 -2.19 -4.07 16 21 C -0.24 1.72 5.68 -36.10 -0.21 1.51 16 22 C -0.03 0.22 2.96 36.01 0.11 0.33 16 23 O -0.52 2.73 12.88 -35.23 -0.45 2.27 16 24 Si 0.65 -4.68 30.97 -169.99 -5.26 -9.94 16 25 C -0.07 0.43 9.68 -40.82 -0.40 0.03 16 26 C 0.06 -0.56 10.66 -17.00 -0.18 -0.74 16 27 N -0.41 3.91 9.69 -9.35 -0.09 3.82 16 28 C -0.13 2.76 5.49 -26.76 -0.15 2.61 16 29 C -0.14 3.74 5.43 -26.76 -0.15 3.60 16 30 H 0.09 -2.59 8.14 -51.93 -0.42 -3.02 16 31 H 0.10 -2.78 8.14 -51.93 -0.42 -3.20 16 32 H 0.09 -1.96 8.14 -51.93 -0.42 -2.39 16 33 H 0.08 -1.93 8.14 -51.93 -0.42 -2.35 16 34 H 0.41 -6.49 7.94 -40.82 -0.32 -6.81 16 35 H 0.19 -1.62 7.63 -52.49 -0.40 -2.02 16 36 H 0.17 -2.15 6.80 -52.49 -0.36 -2.51 16 37 H 0.13 -0.97 7.96 -51.93 -0.41 -1.38 16 38 H 0.38 -3.08 8.70 45.56 0.40 -2.69 16 39 H -0.23 0.90 7.11 56.52 0.40 1.30 16 40 H -0.24 1.38 7.11 56.52 0.40 1.78 16 41 H 0.16 -0.87 7.94 -52.49 -0.42 -1.28 16 42 H 0.18 -2.26 6.62 -52.49 -0.35 -2.61 16 43 H 0.08 -1.67 8.14 -51.93 -0.42 -2.09 16 44 H 0.09 -1.57 8.14 -51.93 -0.42 -1.99 16 45 H 0.09 -2.58 8.14 -51.93 -0.42 -3.00 16 46 H 0.09 -2.47 8.14 -51.93 -0.42 -2.90 16 LS Contribution 388.81 15.07 5.86 5.86 Total: 1.00 -42.69 388.81 -12.09 -54.78 By element: Atomic # 1 Polarization: -89.98 SS G_CDS: -6.31 Total: -96.30 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -3.34 Total: 2.36 kcal Atomic # 7 Polarization: 41.22 SS G_CDS: -0.48 Total: 40.74 kcal Atomic # 8 Polarization: 6.93 SS G_CDS: -0.37 Total: 6.57 kcal Atomic # 14 Polarization: -4.68 SS G_CDS: -5.26 Total: -9.94 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.19 Total: -4.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -42.69 -12.09 -54.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.661 kcal (2) G-P(sol) polarization free energy of solvation -42.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds