Wall clock time and date at job start Mon Mar 8 2021 09:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21556 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.47850 * 119.99807 * 179.97438 * 12 11 9 15 15 C 1.39511 * 119.97027 * 179.97438 * 14 12 11 16 16 N 1.31935 * 120.01591 * 180.02562 * 15 14 12 17 17 C 1.33079 * 119.96992 * 0.02562 * 16 15 14 18 18 C 1.47902 * 120.02658 * 180.02562 * 17 16 15 19 19 C 1.34705 * 122.88667 * 185.02234 * 18 17 16 20 20 S 1.70637 * 110.49558 * 179.97438 * 19 18 17 21 21 C 1.75723 * 91.71701 * 0.02562 * 20 19 18 22 22 C 1.50708 * 125.09178 * 180.02562 * 21 20 19 23 23 O 1.42900 * 109.46648 * 244.97247 * 22 21 20 24 24 Si 1.86294 * 109.47456 * 4.97367 * 22 21 20 25 25 C 1.33079 * 109.81398 * 359.72588 * 21 20 19 26 26 C 1.40113 * 119.94789 * 359.97438 * 17 16 15 27 27 N 1.31475 * 119.98070 * 359.73188 * 26 17 16 28 28 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 29 29 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 30 30 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 31 31 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 34 34 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 35 35 H 1.07995 * 119.98967 * 359.97438 * 15 14 12 36 36 H 1.07992 * 124.75331 * 359.96918 * 19 18 17 37 37 H 1.09006 * 109.46772 * 124.97902 * 22 21 20 38 38 H 0.96703 * 114.00181 * 60.00733 * 23 22 21 39 39 H 1.48495 * 110.00277 * 180.02562 * 24 22 21 40 40 H 1.48506 * 109.99801 * 301.32452 * 24 22 21 41 41 H 1.07997 * 123.12994 * 180.26403 * 25 21 20 42 42 H 1.07999 * 120.01216 * 179.97438 * 26 17 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 28 9 8 44 44 H 1.09004 * 109.47108 * 179.97438 * 28 9 8 45 45 H 1.09002 * 109.47045 * 60.00157 * 29 5 1 46 46 H 1.09001 * 109.47375 * 300.00082 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2266 -4.2625 -4.8352 14 6 -0.2813 -4.5805 -6.5919 15 6 0.4206 -5.6739 -7.1000 16 7 -0.0176 -6.2967 -8.1774 17 6 -1.1292 -5.8811 -8.7795 18 6 -1.6219 -6.5787 -9.9870 19 6 -2.6822 -6.1493 -10.6984 20 16 -2.9726 -7.1856 -12.0225 21 6 -1.6178 -8.2145 -11.5823 22 6 -1.1880 -9.4491 -12.3321 23 8 -1.3702 -10.5980 -11.5021 24 14 -2.2165 -9.6282 -13.8751 25 6 -1.0243 -7.7366 -10.4912 26 6 -1.8331 -4.7829 -8.2680 27 7 -1.3978 -4.1673 -7.1909 28 6 -0.4889 -2.8566 -2.4481 29 6 0.0202 -2.1351 -1.1992 30 1 1.1101 0.0286 -2.4487 31 1 -0.3431 1.0562 -2.4487 32 1 -0.1258 -0.1796 -4.5879 33 1 -1.5794 -0.6935 -3.6979 34 1 -1.2767 -2.5233 -5.3325 35 1 1.3233 -6.0101 -6.6117 36 1 -3.2666 -5.2721 -10.4635 37 1 -0.1363 -9.3609 -12.6046 38 1 -2.2846 -10.7390 -11.2208 39 1 -1.8028 -10.8424 -14.6232 40 1 -3.6554 -9.7173 -13.5188 41 1 -0.1627 -8.2022 -10.0360 42 1 -2.7351 -4.4445 -8.7561 43 1 -1.5789 -2.8569 -2.4481 44 1 -0.1256 -3.8843 -2.4480 45 1 -0.3430 -2.6488 -0.3091 46 1 1.1102 -2.1351 -1.1993 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:40:19 Heat of formation + Delta-G solvation = 90.236190 kcal Electronic energy + Delta-G solvation = -28784.233630 eV Core-core repulsion = 24691.193109 eV Total energy + Delta-G solvation = -4093.040521 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55055 -41.38514 -40.34857 -39.46033 -37.79580 -37.43818 -35.72185 -34.35341 -33.39935 -32.02575 -31.26106 -29.45903 -27.39871 -27.00474 -25.49230 -24.23686 -23.89979 -23.06260 -21.96825 -21.54333 -20.76804 -19.54591 -19.29136 -18.64894 -18.43462 -18.28634 -17.61573 -17.48256 -17.41787 -17.06753 -16.73275 -16.43814 -16.33589 -15.76203 -15.71828 -15.43238 -15.13366 -14.94842 -14.69474 -14.19757 -14.11377 -13.99915 -13.97321 -13.68448 -13.66829 -13.37951 -13.01236 -12.90689 -12.58051 -12.56355 -12.50007 -12.45236 -12.26727 -11.70638 -11.69508 -11.63032 -11.46858 -11.00975 -10.80552 -10.39899 -10.25540 -9.89434 -9.26130 -5.07347 -1.16262 -0.21429 -0.06488 0.41130 0.69878 1.15773 1.22152 1.51048 1.55544 1.75378 1.84365 1.89610 2.61366 2.69195 2.81622 3.07406 3.09822 3.24907 3.30329 3.49863 3.60021 3.66519 3.69458 3.80258 3.84583 3.90183 3.94933 4.05683 4.10001 4.20158 4.28958 4.35153 4.43046 4.48585 4.49964 4.56972 4.63769 4.69797 4.80889 4.86113 4.97458 5.05352 5.06565 5.07086 5.09172 5.16663 5.20316 5.21669 5.39525 5.82378 6.20359 6.37867 6.44480 6.90552 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.001668 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.467093 B =16780.839459 C =17284.721255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.443 0.557 3 H 0.452 0.548 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.157 0.843 7 C -0.137 4.137 8 C -0.125 4.125 9 C 0.130 3.870 10 H 0.075 0.925 11 N -0.698 5.698 12 C 0.581 3.419 13 O -0.559 6.559 14 C -0.003 4.003 15 C 0.112 3.888 16 N -0.463 5.463 17 C 0.169 3.831 18 C -0.103 4.103 19 C -0.199 4.199 20 S 0.242 5.758 21 C -0.249 4.249 22 C -0.041 4.041 23 O -0.545 6.545 24 Si 0.720 3.280 25 C -0.082 4.082 26 C 0.066 3.934 27 N -0.401 5.401 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.419 0.581 35 H 0.182 0.818 36 H 0.210 0.790 37 H 0.129 0.871 38 H 0.388 0.612 39 H -0.282 1.282 40 H -0.251 1.251 41 H 0.135 0.865 42 H 0.215 0.785 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.107 0.893 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 30.410 32.612 44.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.273 0.727 3 H 0.284 0.716 4 H 0.282 0.718 5 C -0.052 4.052 6 H 0.175 0.825 7 C -0.175 4.175 8 C -0.164 4.164 9 C 0.026 3.974 10 H 0.094 0.906 11 N -0.349 5.349 12 C 0.365 3.635 13 O -0.437 6.437 14 C -0.142 4.142 15 C -0.049 4.049 16 N -0.178 5.178 17 C 0.027 3.973 18 C -0.118 4.118 19 C -0.338 4.338 20 S 0.509 5.491 21 C -0.366 4.366 22 C -0.152 4.152 23 O -0.353 6.353 24 Si 0.622 3.378 25 C -0.111 4.111 26 C -0.099 4.099 27 N -0.117 5.117 28 C -0.172 4.172 29 C -0.176 4.176 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.256 0.744 35 H 0.199 0.801 36 H 0.226 0.774 37 H 0.146 0.854 38 H 0.237 0.763 39 H -0.208 1.208 40 H -0.176 1.176 41 H 0.153 0.847 42 H 0.232 0.768 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.549 29.476 31.166 42.973 hybrid contribution 0.917 -1.182 1.612 2.199 sum -1.632 28.295 32.779 43.332 Atomic orbital electron populations 1.42231 1.21987 1.21093 1.16629 0.72746 0.71647 0.71846 1.22845 1.04843 0.92612 0.84946 0.82497 1.21979 1.03510 1.00904 0.91093 1.21740 1.02958 0.91682 0.99977 1.21438 0.99745 0.92765 0.83413 0.90638 1.45880 1.29077 1.30109 1.29798 1.17533 0.83034 0.80799 0.82118 1.90825 1.25665 1.66556 1.60623 1.22141 0.95148 0.98013 0.98936 1.23894 0.99464 0.90769 0.90750 1.68633 1.12497 1.28704 1.07919 1.20962 0.90369 0.92686 0.93272 1.17339 0.99200 0.98274 0.96963 1.25793 1.01110 1.06640 1.00286 1.83308 1.26282 1.15315 1.24152 1.24904 1.03684 1.04645 1.03404 1.24571 1.08826 0.81424 1.00378 1.86619 1.34175 1.45441 1.69076 0.94521 0.77497 0.88470 0.77355 1.20124 1.00583 0.95033 0.95381 1.24274 1.01205 0.92033 0.92404 1.68305 1.09736 1.26647 1.07003 1.21839 1.02249 0.99280 0.93823 1.21934 1.03280 0.93462 0.98896 0.88861 0.86297 0.91036 0.88968 0.74364 0.80079 0.77356 0.85378 0.76275 1.20820 1.17563 0.84740 0.76850 0.89890 0.93829 0.87441 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.52 4.15 -168.68 -0.70 46.82 16 2 H 0.44 -34.72 8.90 -89.70 -0.80 -35.52 16 3 H 0.45 -36.60 8.96 -89.69 -0.80 -37.41 16 4 H 0.45 -36.07 8.96 -89.69 -0.80 -36.87 16 5 C 0.05 -3.43 3.03 44.92 0.14 -3.29 16 6 H 0.16 -10.32 8.14 -2.39 -0.02 -10.34 16 7 C -0.14 7.69 5.43 30.60 0.17 7.86 16 8 C -0.13 5.50 5.39 30.59 0.16 5.66 16 9 C 0.13 -4.55 2.45 44.99 0.11 -4.44 16 10 H 0.08 -2.31 7.58 -2.39 -0.02 -2.33 16 11 N -0.70 18.46 5.07 -445.40 -2.26 16.20 16 12 C 0.58 -9.78 7.77 86.79 0.67 -9.10 16 13 O -0.56 6.04 15.99 -3.89 -0.06 5.97 16 14 C 0.00 0.04 6.75 41.78 0.28 0.32 16 15 C 0.11 -1.20 10.76 84.98 0.91 -0.29 16 16 N -0.46 3.89 9.98 -183.29 -1.83 2.06 16 17 C 0.17 -2.13 6.75 41.97 0.28 -1.85 16 18 C -0.10 1.37 5.79 -21.17 -0.12 1.25 16 19 C -0.20 3.81 10.24 67.01 0.69 4.50 16 20 S 0.24 -4.21 20.33 -56.49 -1.15 -5.36 16 21 C -0.25 3.13 5.68 24.53 0.14 3.27 16 22 C -0.04 0.47 2.96 71.24 0.21 0.68 16 23 O -0.54 4.22 12.88 -148.98 -1.92 2.31 16 24 Si 0.72 -9.24 30.97 68.60 2.12 -7.11 16 25 C -0.08 0.81 9.68 21.47 0.21 1.02 16 26 C 0.07 -1.21 10.66 85.20 0.91 -0.30 16 27 N -0.40 6.95 9.69 -183.50 -1.78 5.17 16 28 C -0.13 5.16 5.49 30.58 0.17 5.33 16 29 C -0.14 7.28 5.43 30.58 0.17 7.45 16 30 H 0.09 -5.18 8.14 -2.39 -0.02 -5.20 16 31 H 0.12 -7.10 8.14 -2.39 -0.02 -7.12 16 32 H 0.07 -2.78 8.14 -2.39 -0.02 -2.80 16 33 H 0.09 -4.18 8.14 -2.39 -0.02 -4.20 16 34 H 0.42 -12.03 7.94 -92.71 -0.74 -12.77 16 35 H 0.18 -2.13 7.63 -2.91 -0.02 -2.15 16 36 H 0.21 -5.66 6.80 -2.91 -0.02 -5.68 16 37 H 0.13 -1.57 7.96 -2.38 -0.02 -1.59 16 38 H 0.39 -5.40 8.70 -74.06 -0.64 -6.05 16 39 H -0.28 1.33 7.11 99.48 0.71 2.04 16 40 H -0.25 2.73 7.11 99.48 0.71 3.44 16 41 H 0.13 -0.88 7.94 -2.91 -0.02 -0.90 16 42 H 0.22 -5.69 6.62 -2.91 -0.02 -5.71 16 43 H 0.08 -3.30 8.14 -2.39 -0.02 -3.32 16 44 H 0.04 -1.24 8.14 -2.38 -0.02 -1.26 16 45 H 0.11 -5.92 8.14 -2.39 -0.02 -5.94 16 46 H 0.09 -4.69 8.14 -2.39 -0.02 -4.71 16 Total: 1.00 -97.10 388.81 -5.14 -102.25 By element: Atomic # 1 Polarization: -183.70 SS G_CDS: -2.67 Total: -186.37 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.09 Total: 18.06 kcal Atomic # 7 Polarization: 76.83 SS G_CDS: -6.57 Total: 70.26 kcal Atomic # 8 Polarization: 10.26 SS G_CDS: -1.98 Total: 8.28 kcal Atomic # 14 Polarization: -9.24 SS G_CDS: 2.12 Total: -7.11 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -1.15 Total: -5.36 kcal Total: -97.10 -5.14 -102.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.484 kcal (2) G-P(sol) polarization free energy of solvation -97.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds