Wall clock time and date at job start Mon Mar 8 2021 09:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00908 * 109.46690 * 1 2 4 4 H 1.00897 * 109.46471 * 240.00959 * 1 2 3 5 5 C 1.46896 * 109.47479 * 120.00266 * 1 2 3 6 6 H 1.08993 * 109.47700 * 299.99908 * 5 1 2 7 7 C 1.53001 * 109.46910 * 59.99910 * 5 1 2 8 8 C 1.53001 * 109.47236 * 179.97438 * 7 5 1 9 9 C 1.53006 * 109.46694 * 299.99780 * 8 7 5 10 10 H 1.08988 * 109.47406 * 299.99852 * 9 8 7 11 11 N 1.46508 * 109.46807 * 179.97438 * 9 8 7 12 12 C 1.34774 * 119.99876 * 154.99882 * 11 9 8 13 13 O 1.21592 * 120.00007 * 0.02562 * 12 11 9 14 14 C 1.47582 * 120.00407 * 180.02562 * 12 11 9 15 15 C 1.40144 * 120.84944 * 180.02562 * 14 12 11 16 16 N 1.31902 * 119.03287 * 179.97438 * 15 14 12 17 17 C 1.32888 * 120.87710 * 0.02562 * 16 15 14 18 18 C 1.47806 * 119.06254 * 179.97438 * 17 16 15 19 19 C 1.34755 * 122.90217 * 0.02562 * 18 17 16 20 20 S 1.70628 * 110.49091 * 179.97438 * 19 18 17 21 21 C 1.75722 * 91.72766 * 0.02562 * 20 19 18 22 22 C 1.50696 * 125.08874 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47331 * 245.02437 * 22 21 20 24 24 Si 1.86300 * 109.47007 * 5.02393 * 22 21 20 25 25 C 1.33047 * 109.82214 * 0.02562 * 21 20 19 26 26 N 1.32878 * 121.86834 * 0.25520 * 17 16 15 27 27 C 1.31905 * 120.88332 * 359.47604 * 26 17 16 28 28 C 1.53001 * 109.47099 * 60.00136 * 9 8 7 29 29 C 1.52997 * 109.46891 * 179.97438 * 5 1 2 30 30 H 1.09005 * 109.47222 * 59.99777 * 7 5 1 31 31 H 1.09003 * 109.46902 * 299.99921 * 7 5 1 32 32 H 1.09003 * 109.47366 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47430 * 59.99449 * 8 7 5 34 34 H 0.96997 * 119.99910 * 335.00402 * 11 9 8 35 35 H 1.07998 * 120.48247 * 359.95930 * 15 14 12 36 36 H 1.08004 * 124.74985 * 0.24647 * 19 18 17 37 37 H 1.09002 * 109.47186 * 125.02188 * 22 21 20 38 38 H 0.96699 * 113.99821 * 59.99428 * 23 22 21 39 39 H 1.48496 * 109.99945 * 179.97438 * 24 22 21 40 40 H 1.48500 * 110.00291 * 301.31845 * 24 22 21 41 41 H 1.08003 * 123.11773 * 180.02562 * 25 21 20 42 42 H 1.07995 * 120.48699 * 180.23448 * 27 26 17 43 43 H 1.09005 * 109.47222 * 59.99746 * 28 9 8 44 44 H 1.08994 * 109.47058 * 179.97438 * 28 9 8 45 45 H 1.09001 * 109.47313 * 299.99708 * 29 5 1 46 46 H 1.08990 * 109.47538 * 60.00505 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9514 0.0000 4 1 -0.3362 -0.4755 0.8239 5 6 -0.4897 -0.6925 -1.1993 6 1 -0.1265 -0.1788 -2.0894 7 6 0.0203 -2.1350 -1.1993 8 6 -0.4903 -2.8566 -2.4481 9 6 -2.0204 -2.8566 -2.4473 10 1 -2.3832 -3.3702 -1.5571 11 7 -2.5093 -3.5470 -3.6434 12 6 -3.7312 -4.1156 -3.6411 13 8 -4.4280 -4.0552 -2.6465 14 6 -4.2236 -4.8115 -4.8458 15 6 -5.4915 -5.4085 -4.8630 16 7 -5.8958 -6.0208 -5.9591 17 6 -5.1187 -6.0761 -7.0356 18 6 -5.6118 -6.7731 -8.2421 19 6 -6.8230 -7.3605 -8.3045 20 16 -7.0658 -8.0672 -9.8385 21 6 -5.4811 -7.5443 -10.3892 22 6 -4.9088 -7.8090 -11.7578 23 8 -3.7672 -8.6604 -11.6403 24 14 -6.1956 -8.6387 -12.8192 25 6 -4.8618 -6.8806 -9.4164 26 7 -3.9087 -5.5272 -7.0563 27 6 -3.4350 -4.8926 -6.0015 28 6 -2.5304 -1.4141 -2.4473 29 6 -2.0197 -0.6930 -1.1989 30 1 -0.3430 -2.6488 -0.3092 31 1 1.1103 -2.1350 -1.1993 32 1 -0.1274 -3.8844 -2.4478 33 1 -0.1275 -2.3429 -3.3384 34 1 -1.9536 -3.5949 -4.4369 35 1 -6.1280 -5.3680 -3.9915 36 1 -7.5412 -7.3775 -7.4981 37 1 -4.6128 -6.8655 -12.2166 38 1 -3.9569 -9.5196 -11.2393 39 1 -5.6438 -8.9046 -14.1719 40 1 -6.6309 -9.9108 -12.1886 41 1 -3.8719 -6.4624 -9.5249 42 1 -2.4522 -4.4457 -6.0266 43 1 -2.1675 -0.9004 -3.3377 44 1 -3.6203 -1.4141 -2.4472 45 1 -2.3827 -1.2071 -0.3089 46 1 -2.3834 0.3344 -1.1988 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:57 Heat of formation + Delta-G solvation = 93.144445 kcal Electronic energy + Delta-G solvation = -28831.246439 eV Core-core repulsion = 24738.332029 eV Total energy + Delta-G solvation = -4092.914410 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49845 -41.37531 -40.33733 -39.40780 -37.70416 -37.41590 -35.32151 -34.54839 -33.46008 -32.00282 -31.51002 -29.38615 -27.39018 -26.87615 -25.55224 -24.22084 -23.81968 -23.15412 -21.90098 -21.51348 -20.84164 -19.45106 -19.11444 -18.79597 -18.45715 -18.28355 -17.79032 -17.56159 -17.32313 -17.04525 -16.65186 -16.34873 -15.90484 -15.84944 -15.81312 -15.31706 -15.13621 -14.98571 -14.65472 -14.20779 -14.14320 -14.07480 -13.90898 -13.69786 -13.65188 -13.36154 -13.01564 -12.89613 -12.56384 -12.48338 -12.44222 -12.24577 -12.24214 -11.68481 -11.66110 -11.48724 -11.20900 -11.18540 -10.77449 -10.55077 -10.25087 -9.91240 -9.39673 -5.05160 -1.13162 -0.14296 -0.08799 0.37374 0.69149 1.18208 1.25566 1.53463 1.56891 1.79379 1.89717 1.90257 2.53957 2.67979 2.84707 3.11027 3.20069 3.26170 3.33671 3.46605 3.60083 3.66366 3.70850 3.73417 3.88662 3.92563 3.95748 4.11959 4.15528 4.23367 4.30395 4.37177 4.47105 4.48973 4.52990 4.57656 4.63773 4.72068 4.85348 4.88518 4.99368 5.01804 5.07142 5.08423 5.09465 5.18597 5.21840 5.23868 5.41574 5.65254 6.25543 6.39805 6.72538 6.94849 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.001732 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.372933 B =16163.482690 C =16935.864406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.159 0.841 7 C -0.138 4.138 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.073 0.927 11 N -0.709 5.709 12 C 0.579 3.421 13 O -0.565 6.565 14 C -0.262 4.262 15 C 0.204 3.796 16 N -0.535 5.535 17 C 0.395 3.605 18 C -0.101 4.101 19 C -0.187 4.187 20 S 0.233 5.767 21 C -0.246 4.246 22 C -0.031 4.031 23 O -0.541 6.541 24 Si 0.711 3.289 25 C -0.067 4.067 26 N -0.527 5.527 27 C 0.200 3.800 28 C -0.133 4.133 29 C -0.139 4.139 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.415 0.585 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.138 0.862 38 H 0.388 0.612 39 H -0.277 1.277 40 H -0.258 1.258 41 H 0.154 0.846 42 H 0.216 0.784 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.087 0.913 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.735 26.973 28.018 44.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.165 4.165 9 C 0.030 3.970 10 H 0.091 0.909 11 N -0.361 5.361 12 C 0.365 3.635 13 O -0.445 6.445 14 C -0.270 4.270 15 C 0.037 3.963 16 N -0.249 5.249 17 C 0.132 3.868 18 C -0.117 4.117 19 C -0.327 4.327 20 S 0.500 5.500 21 C -0.363 4.363 22 C -0.143 4.143 23 O -0.349 6.349 24 Si 0.613 3.387 25 C -0.097 4.097 26 N -0.241 5.241 27 C 0.032 3.968 28 C -0.172 4.172 29 C -0.177 4.177 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.203 0.797 36 H 0.200 0.800 37 H 0.156 0.844 38 H 0.237 0.763 39 H -0.203 1.203 40 H -0.183 1.183 41 H 0.171 0.829 42 H 0.232 0.768 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.734 25.403 26.284 41.541 hybrid contribution 1.779 0.089 1.785 2.521 sum 21.512 25.493 28.069 43.595 Atomic orbital electron populations 1.42250 1.22130 1.20930 1.16749 0.71684 0.71868 0.72798 1.22863 0.95945 0.96156 0.90290 0.82390 1.21986 1.03928 0.92544 0.99190 1.21761 0.91076 1.02938 1.00689 1.21362 0.95650 0.92684 0.87344 0.90903 1.45856 1.16208 1.55631 1.18392 1.17612 0.82296 0.77855 0.85736 1.90825 1.57467 1.61091 1.35085 1.21791 0.99196 1.07794 0.98194 1.23694 0.92595 0.85000 0.95035 1.68538 1.36336 1.19470 1.00565 1.21230 0.85861 0.88820 0.90913 1.17209 0.95687 1.05904 0.92918 1.25717 1.00782 1.01871 1.04346 1.83301 1.13678 1.50361 1.02650 1.24905 0.99951 1.09396 1.02033 1.24459 0.94851 1.00204 0.94766 1.86605 1.33026 1.31138 1.84149 0.94506 0.82553 0.83684 0.77963 1.20053 1.01081 0.98208 0.90346 1.68505 1.13781 1.11427 1.30379 1.24069 0.99478 0.88026 0.85240 1.21847 1.00737 0.94557 1.00090 1.21934 0.92960 1.03752 0.99047 0.89072 0.86440 0.90862 0.88571 0.74738 0.79706 0.79956 0.84433 0.76280 1.20251 1.18349 0.82876 0.76764 0.89550 0.93845 0.89395 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.10 4.15 -168.69 -0.70 47.39 16 2 H 0.45 -36.88 8.96 -89.69 -0.80 -37.68 16 3 H 0.45 -36.36 8.96 -89.69 -0.80 -37.17 16 4 H 0.44 -34.96 8.90 -89.70 -0.80 -35.76 16 5 C 0.05 -3.49 3.03 44.92 0.14 -3.35 16 6 H 0.16 -10.64 8.14 -2.39 -0.02 -10.66 16 7 C -0.14 8.00 5.43 30.59 0.17 8.16 16 8 C -0.13 5.91 5.39 30.60 0.16 6.07 16 9 C 0.13 -5.09 2.45 44.99 0.11 -4.98 16 10 H 0.07 -2.39 7.58 -2.39 -0.02 -2.41 16 11 N -0.71 22.49 5.03 -445.64 -2.24 20.25 16 12 C 0.58 -12.19 7.74 86.71 0.67 -11.52 16 13 O -0.57 7.53 16.10 -4.01 -0.06 7.46 16 14 C -0.26 4.76 5.91 -19.88 -0.12 4.64 16 15 C 0.20 -2.61 10.87 85.15 0.93 -1.68 16 16 N -0.54 4.66 9.78 -188.29 -1.84 2.82 16 17 C 0.40 -3.43 7.57 137.21 1.04 -2.39 16 18 C -0.10 0.90 5.80 -21.18 -0.12 0.77 16 19 C -0.19 2.02 10.43 67.02 0.70 2.72 16 20 S 0.23 -3.09 20.32 -56.49 -1.15 -4.23 16 21 C -0.25 2.95 5.68 24.52 0.14 3.08 16 22 C -0.03 0.39 2.96 71.23 0.21 0.60 16 23 O -0.54 5.18 12.88 -148.98 -1.92 3.26 16 24 Si 0.71 -8.94 30.97 68.60 2.12 -6.81 16 25 C -0.07 0.68 9.65 21.47 0.21 0.89 16 26 N -0.53 6.57 9.81 -188.29 -1.85 4.72 16 27 C 0.20 -4.08 10.80 85.15 0.92 -3.16 16 28 C -0.13 5.51 5.49 30.58 0.17 5.68 16 29 C -0.14 7.55 5.42 30.58 0.17 7.71 16 30 H 0.09 -5.16 8.14 -2.38 -0.02 -5.18 16 31 H 0.12 -7.16 8.14 -2.39 -0.02 -7.18 16 32 H 0.07 -3.07 8.14 -2.39 -0.02 -3.09 16 33 H 0.10 -4.70 8.14 -2.39 -0.02 -4.72 16 34 H 0.41 -15.34 6.72 -92.71 -0.62 -15.97 16 35 H 0.19 -2.68 7.73 -2.91 -0.02 -2.70 16 36 H 0.18 -2.20 7.89 -2.91 -0.02 -2.22 16 37 H 0.14 -2.04 7.96 -2.39 -0.02 -2.06 16 38 H 0.39 -5.78 8.70 -74.06 -0.64 -6.42 16 39 H -0.28 1.46 7.11 99.48 0.71 2.17 16 40 H -0.26 2.41 7.11 99.48 0.71 3.12 16 41 H 0.15 -1.56 7.90 -2.91 -0.02 -1.58 16 42 H 0.22 -6.74 6.52 -2.91 -0.02 -6.76 16 43 H 0.09 -3.71 8.14 -2.38 -0.02 -3.73 16 44 H 0.04 -1.33 8.14 -2.39 -0.02 -1.35 16 45 H 0.09 -4.66 8.14 -2.39 -0.02 -4.68 16 46 H 0.11 -5.96 8.14 -2.39 -0.02 -5.97 16 Total: 1.00 -99.20 388.99 -4.72 -103.92 By element: Atomic # 1 Polarization: -189.46 SS G_CDS: -2.56 Total: -192.02 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 5.48 Total: 13.24 kcal Atomic # 7 Polarization: 81.82 SS G_CDS: -6.63 Total: 75.19 kcal Atomic # 8 Polarization: 12.70 SS G_CDS: -1.98 Total: 10.72 kcal Atomic # 14 Polarization: -8.94 SS G_CDS: 2.12 Total: -6.81 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.15 Total: -4.23 kcal Total: -99.20 -4.72 -103.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.061 kcal (2) G-P(sol) polarization free energy of solvation -99.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds