Wall clock time and date at job start Mon Mar 8 2021 09:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00899 * 1 3 3 H 1.00895 * 109.47565 * 1 2 4 4 H 1.00897 * 109.47658 * 239.99659 * 1 2 3 5 5 C 1.46905 * 109.46689 * 120.00182 * 1 2 3 6 6 H 1.09002 * 109.46952 * 180.02562 * 5 1 2 7 7 C 1.52998 * 109.47245 * 299.99782 * 5 1 2 8 8 C 1.52993 * 109.47132 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47339 * 299.99964 * 8 7 5 10 10 H 1.08996 * 109.47156 * 300.00033 * 9 8 7 11 11 N 1.46504 * 109.47144 * 179.97438 * 9 8 7 12 12 C 1.34786 * 119.99525 * 85.00224 * 11 9 8 13 13 O 1.21586 * 119.99977 * 0.02562 * 12 11 9 14 14 C 1.47585 * 119.99705 * 179.97438 * 12 11 9 15 15 C 1.40269 * 120.44526 * 180.02562 * 14 12 11 16 16 C 1.36933 * 118.51311 * 180.02562 * 15 14 12 17 17 C 1.39619 * 119.34901 * 359.97438 * 16 15 14 18 18 C 1.47966 * 119.57075 * 179.97438 * 17 16 15 19 19 C 1.34651 * 122.88162 * 359.71473 * 18 17 16 20 20 S 1.70625 * 110.49947 * 179.85609 * 19 18 17 21 21 C 1.75727 * 91.71717 * 0.34224 * 20 19 18 22 22 C 1.50700 * 125.10089 * 179.84584 * 21 20 19 23 23 O 1.42899 * 109.46514 * 244.95309 * 22 21 20 24 24 Si 1.86293 * 109.47293 * 4.95255 * 22 21 20 25 25 C 1.33098 * 109.79339 * 359.80123 * 21 20 19 26 26 N 1.32917 * 120.85488 * 0.28414 * 17 16 15 27 27 C 1.31535 * 121.61136 * 359.42251 * 26 17 16 28 28 C 1.53000 * 109.46742 * 60.00579 * 9 8 7 29 29 C 1.53001 * 109.47174 * 60.00127 * 5 1 2 30 30 H 1.08997 * 109.47230 * 300.00316 * 7 5 1 31 31 H 1.09005 * 109.46547 * 59.99887 * 7 5 1 32 32 H 1.09003 * 109.47258 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47415 * 60.00519 * 8 7 5 34 34 H 0.96993 * 120.00616 * 265.00815 * 11 9 8 35 35 H 1.08003 * 120.74113 * 0.02562 * 15 14 12 36 36 H 1.08004 * 120.32468 * 179.97438 * 16 15 14 37 37 H 1.07999 * 124.74447 * 359.97438 * 19 18 17 38 38 H 1.09000 * 109.47366 * 124.95937 * 22 21 20 39 39 H 0.96700 * 114.00529 * 60.00291 * 23 22 21 40 40 H 1.48493 * 109.99928 * 58.68796 * 24 22 21 41 41 H 1.48500 * 109.99835 * 180.02562 * 24 22 21 42 42 H 1.08001 * 123.12489 * 180.02562 * 25 21 20 43 43 H 1.08001 * 119.71832 * 180.26652 * 27 26 17 44 44 H 1.08996 * 109.47741 * 59.99812 * 28 9 8 45 45 H 1.09007 * 109.47046 * 179.97438 * 28 9 8 46 46 H 1.09003 * 109.47085 * 59.99686 * 29 5 1 47 47 H 1.08996 * 109.46847 * 299.99773 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4896 -0.6926 -1.1995 6 1 -1.5796 -0.6922 -1.1998 7 6 0.0204 0.0287 -2.4487 8 6 -0.4889 -0.6930 -3.6979 9 6 0.0217 -2.1353 -3.6976 10 1 1.1116 -2.1348 -3.6973 11 7 -0.4666 -2.8265 -4.8934 12 6 0.2101 -2.7238 -6.0546 13 8 1.2259 -2.0579 -6.1094 14 6 -0.2815 -3.4205 -7.2592 15 6 0.4156 -3.3205 -8.4723 16 6 -0.0761 -3.9828 -9.5653 17 6 -1.2473 -4.7327 -9.4413 18 6 -1.7833 -5.4498 -10.6194 19 6 -1.1930 -5.4123 -11.8290 20 16 -2.0712 -6.3500 -12.9518 21 6 -3.2641 -6.7838 -11.7365 22 6 -4.4639 -7.6638 -11.9753 23 8 -5.6580 -6.8979 -11.8033 24 14 -4.4036 -8.3387 -13.7107 25 6 -2.9483 -6.2192 -10.5733 26 7 -1.8902 -4.8058 -8.2803 27 6 -1.4469 -4.1887 -7.2066 28 6 -0.4885 -2.8565 -2.4484 29 6 0.0204 -2.1351 -1.1994 30 1 -0.3429 1.0563 -2.4488 31 1 1.1105 0.0287 -2.4486 32 1 -0.1252 -0.1795 -4.5879 33 1 -1.5790 -0.6934 -3.6983 34 1 -1.2768 -3.3579 -4.8497 35 1 1.3200 -2.7342 -8.5427 36 1 0.4370 -3.9256 -10.5140 37 1 -0.2891 -4.8666 -12.0561 38 1 -4.4563 -8.4895 -11.2638 39 1 -5.7324 -6.1447 -12.4051 40 1 -3.1512 -9.1106 -13.9121 41 1 -5.5819 -9.2077 -13.9589 42 1 -3.5378 -6.3445 -9.6771 43 1 -1.9914 -4.2724 -6.2777 44 1 -1.5785 -2.8570 -2.4486 45 1 -0.1251 -3.8842 -2.4483 46 1 -0.3429 -2.6489 -0.3094 47 1 1.1104 -2.1350 -1.1994 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081484_17119696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:52:21 Heat of formation + Delta-G solvation = 77.617979 kcal Electronic energy + Delta-G solvation = -28690.681722 eV Core-core repulsion = 24662.519945 eV Total energy + Delta-G solvation = -4028.161777 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99011 -41.21191 -40.25539 -39.17783 -37.55474 -37.38847 -34.68606 -33.79707 -33.10746 -32.01743 -31.08202 -29.26287 -27.26824 -26.37807 -24.53258 -24.20880 -23.71155 -22.86111 -21.76905 -21.48801 -20.61949 -19.41535 -18.79559 -18.44242 -18.29670 -18.21545 -17.53001 -17.49252 -17.19331 -16.58592 -16.33941 -16.25905 -16.15671 -15.57388 -15.37256 -15.27184 -15.06136 -14.87785 -14.47880 -14.20222 -14.16330 -13.98376 -13.79243 -13.70734 -13.64202 -13.46115 -13.36858 -12.90726 -12.56244 -12.49366 -12.28151 -12.26092 -11.74939 -11.69316 -11.54006 -11.38350 -11.18893 -10.79715 -10.65527 -10.53630 -10.22356 -9.86317 -9.14132 -5.16890 -0.89744 -0.00801 0.11511 0.44052 0.73962 1.22160 1.30597 1.56506 1.57598 1.87923 1.90617 1.97682 2.79445 2.99312 3.10007 3.24802 3.33064 3.51885 3.52897 3.62341 3.64658 3.71219 3.77929 3.83863 3.90904 3.95484 4.01949 4.10698 4.17431 4.22196 4.35611 4.36850 4.42199 4.48009 4.52865 4.57638 4.63269 4.70732 4.71687 4.84168 4.92170 4.97852 5.01703 5.05737 5.07795 5.17199 5.19851 5.22966 5.27162 5.38848 5.43865 6.30312 6.67115 6.67806 7.00068 Molecular weight = 361.14amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.001735 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.353703 B =16134.224631 C =16941.256348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.442 0.558 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.054 3.946 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.133 4.133 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.713 5.713 12 C 0.570 3.430 13 O -0.572 6.572 14 C -0.211 4.211 15 C -0.019 4.019 16 C -0.172 4.172 17 C 0.208 3.792 18 C -0.100 4.100 19 C -0.214 4.214 20 S 0.222 5.778 21 C -0.251 4.251 22 C -0.025 4.025 23 O -0.550 6.550 24 Si 0.727 3.273 25 C -0.078 4.078 26 N -0.503 5.503 27 C 0.148 3.852 28 C -0.126 4.126 29 C -0.138 4.138 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.414 0.586 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.195 0.805 38 H 0.117 0.883 39 H 0.396 0.604 40 H -0.263 1.263 41 H -0.275 1.275 42 H 0.142 0.858 43 H 0.193 0.807 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 20.501 36.654 42.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.052 4.052 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.172 4.172 9 C 0.029 3.971 10 H 0.089 0.911 11 N -0.364 5.364 12 C 0.358 3.642 13 O -0.452 6.452 14 C -0.217 4.217 15 C -0.045 4.045 16 C -0.192 4.192 17 C 0.071 3.929 18 C -0.115 4.115 19 C -0.352 4.352 20 S 0.490 5.510 21 C -0.368 4.368 22 C -0.138 4.138 23 O -0.358 6.358 24 Si 0.630 3.370 25 C -0.108 4.108 26 N -0.212 5.212 27 C -0.012 4.012 28 C -0.165 4.165 29 C -0.176 4.176 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.168 0.832 36 H 0.180 0.820 37 H 0.212 0.788 38 H 0.134 0.866 39 H 0.246 0.754 40 H -0.189 1.189 41 H -0.201 1.201 42 H 0.160 0.840 43 H 0.209 0.791 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.136 0.864 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.112 18.843 34.873 39.966 hybrid contribution 0.658 0.405 1.615 1.790 sum 5.770 19.247 36.488 41.655 Atomic orbital electron populations 1.42240 1.21969 1.21102 1.16682 0.72783 0.71850 0.71668 1.22855 1.04871 0.93190 0.84318 0.82416 1.21941 1.03155 1.00714 0.91820 1.21850 1.02327 0.94339 0.98674 1.21342 0.99522 0.92254 0.83972 0.91075 1.45912 1.29268 1.52171 1.09065 1.17981 0.82915 0.79738 0.83615 1.90795 1.26206 1.42673 1.85514 1.21073 0.99990 1.04880 0.95757 1.21550 0.98256 0.93808 0.90918 1.21989 0.97081 0.98735 1.01390 1.19780 0.90596 0.91720 0.90782 1.17590 0.97898 1.03539 0.92470 1.25678 1.06637 1.05802 0.97109 1.83141 1.15688 1.41215 1.10948 1.24996 1.04267 1.09388 0.98164 1.24435 0.81898 0.95541 1.11935 1.86493 1.38093 1.46496 1.64723 0.94274 0.79326 0.86094 0.77348 1.20121 0.95820 0.96387 0.98456 1.67771 1.32728 1.21421 0.99313 1.23362 0.91394 0.89151 0.97247 1.21748 1.03082 0.99829 0.91822 1.21970 1.03421 0.92807 0.99386 0.87507 0.89391 0.93957 0.89661 0.74854 0.83197 0.81992 0.78821 0.86574 0.75359 1.18872 1.20106 0.84001 0.79076 0.88718 0.90964 0.86391 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.59 4.15 -168.67 -0.70 46.89 16 2 H 0.44 -34.68 8.90 -89.69 -0.80 -35.48 16 3 H 0.45 -36.09 8.96 -89.70 -0.80 -36.89 16 4 H 0.45 -36.59 8.96 -89.70 -0.80 -37.39 16 5 C 0.05 -3.45 3.03 44.91 0.14 -3.31 16 6 H 0.16 -10.44 8.14 -2.39 -0.02 -10.46 16 7 C -0.14 7.35 5.43 30.59 0.17 7.52 16 8 C -0.13 5.27 5.49 30.59 0.17 5.43 16 9 C 0.13 -4.81 2.45 44.99 0.11 -4.70 16 10 H 0.07 -2.20 7.58 -2.39 -0.02 -2.21 16 11 N -0.71 20.76 5.03 -445.63 -2.24 18.52 16 12 C 0.57 -10.67 7.74 86.71 0.67 -10.00 16 13 O -0.57 6.34 16.07 -3.99 -0.06 6.27 16 14 C -0.21 3.55 5.89 -19.97 -0.12 3.44 16 15 C -0.02 0.28 9.65 22.46 0.22 0.50 16 16 C -0.17 2.53 9.45 22.30 0.21 2.74 16 17 C 0.21 -2.35 6.74 41.89 0.28 -2.07 16 18 C -0.10 1.10 5.79 -21.17 -0.12 0.98 16 19 C -0.21 3.14 10.22 67.00 0.69 3.83 16 20 S 0.22 -3.27 20.33 -56.49 -1.15 -4.41 16 21 C -0.25 2.90 5.68 24.53 0.14 3.04 16 22 C -0.03 0.29 2.96 71.24 0.21 0.50 16 23 O -0.55 5.90 12.88 -148.98 -1.92 3.98 16 24 Si 0.73 -8.91 30.97 68.60 2.12 -6.79 16 25 C -0.08 0.74 9.66 21.47 0.21 0.95 16 26 N -0.50 5.89 9.80 -183.84 -1.80 4.09 16 27 C 0.15 -2.70 10.71 85.09 0.91 -1.79 16 28 C -0.13 5.69 5.39 30.58 0.16 5.86 16 29 C -0.14 7.79 5.43 30.58 0.17 7.96 16 30 H 0.11 -5.90 8.14 -2.39 -0.02 -5.92 16 31 H 0.09 -4.57 8.14 -2.38 -0.02 -4.59 16 32 H 0.04 -1.22 8.14 -2.39 -0.02 -1.24 16 33 H 0.08 -3.50 8.14 -2.38 -0.02 -3.52 16 34 H 0.41 -14.00 6.65 -92.71 -0.62 -14.61 16 35 H 0.15 -2.30 7.72 -2.91 -0.02 -2.32 16 36 H 0.16 -3.16 6.56 -2.91 -0.02 -3.18 16 37 H 0.19 -3.91 6.74 -2.91 -0.02 -3.93 16 38 H 0.12 -1.24 7.96 -2.39 -0.02 -1.26 16 39 H 0.40 -7.39 8.70 -74.06 -0.64 -8.04 16 40 H -0.26 2.15 7.11 99.48 0.71 2.85 16 41 H -0.28 1.42 7.11 99.48 0.71 2.13 16 42 H 0.14 -1.12 7.92 -2.91 -0.02 -1.14 16 43 H 0.19 -5.21 6.41 -2.91 -0.02 -5.23 16 44 H 0.09 -4.44 8.14 -2.39 -0.02 -4.46 16 45 H 0.07 -2.89 8.14 -2.38 -0.02 -2.91 16 46 H 0.12 -7.06 8.14 -2.39 -0.02 -7.08 16 47 H 0.09 -5.08 8.14 -2.39 -0.02 -5.10 16 Total: 1.00 -98.47 391.49 -4.11 -102.58 By element: Atomic # 1 Polarization: -189.44 SS G_CDS: -2.57 Total: -192.01 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 4.21 Total: 20.87 kcal Atomic # 7 Polarization: 74.25 SS G_CDS: -4.74 Total: 69.50 kcal Atomic # 8 Polarization: 12.24 SS G_CDS: -1.98 Total: 10.25 kcal Atomic # 14 Polarization: -8.91 SS G_CDS: 2.12 Total: -6.79 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -1.15 Total: -4.41 kcal Total: -98.47 -4.11 -102.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081484_17119696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.202 kcal (2) G-P(sol) polarization free energy of solvation -98.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds