Wall clock time and date at job start Mon Mar 8 2021 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00894 * 109.47425 * 1 2 4 4 H 1.00901 * 109.47196 * 239.99879 * 1 2 3 5 5 C 1.46900 * 109.47435 * 120.00315 * 1 2 3 6 6 H 1.08993 * 112.91155 * 191.25054 * 5 1 2 7 7 C 1.53778 * 113.61277 * 322.50111 * 5 1 2 8 8 C 1.53778 * 87.08449 * 89.11525 * 7 5 1 9 9 H 1.08998 * 113.61879 * 270.88747 * 8 7 5 10 10 C 1.50698 * 113.69240 * 139.98944 * 8 7 5 11 11 C 1.37943 * 119.92552 * 142.19363 * 10 8 7 12 12 C 1.39587 * 119.85044 * 179.73229 * 11 10 8 13 13 C 1.47832 * 120.14512 * 180.24865 * 12 11 10 14 14 C 1.34797 * 125.27614 * 180.29627 * 13 12 11 15 15 C 1.37959 * 114.70727 * 179.97438 * 14 13 12 16 16 C 1.33614 * 115.06474 * 0.02562 * 15 14 13 17 17 C 1.50701 * 125.11665 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47681 * 300.00359 * 17 16 15 19 19 Si 1.86299 * 109.46749 * 179.97438 * 17 16 15 20 20 S 1.75857 * 109.76040 * 359.77061 * 16 15 14 21 21 C 1.39552 * 119.71319 * 0.54107 * 12 11 10 22 22 C 1.37974 * 119.85503 * 359.73316 * 21 12 11 23 23 C 1.38340 * 120.14376 * 359.97438 * 22 21 12 24 24 C 1.53784 * 113.61442 * 59.99720 * 5 1 2 25 25 H 1.08999 * 113.61526 * 334.56860 * 7 5 1 26 26 H 1.08999 * 113.69218 * 203.67485 * 7 5 1 27 27 H 1.07995 * 120.07610 * 359.97438 * 11 10 8 28 28 H 1.08007 * 122.63819 * 359.97438 * 14 13 12 29 29 H 1.08001 * 122.46392 * 180.02562 * 15 14 13 30 30 H 1.09005 * 109.46937 * 60.00776 * 17 16 15 31 31 H 0.96698 * 114.00271 * 180.02562 * 18 17 16 32 32 H 1.48493 * 110.00385 * 60.00508 * 19 17 16 33 33 H 1.48506 * 109.99854 * 181.32167 * 19 17 16 34 34 H 1.08003 * 120.07229 * 179.75154 * 21 12 11 35 35 H 1.07999 * 119.93410 * 179.97438 * 22 21 12 36 36 H 1.07996 * 119.85845 * 179.97438 * 23 22 21 37 37 H 1.09004 * 113.61451 * 156.33974 * 24 5 1 38 38 H 1.08994 * 113.61477 * 25.43276 * 24 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4897 -0.6925 -1.1994 6 1 -1.5595 -0.5588 -1.3595 7 6 0.3588 -0.4265 -2.4539 8 6 1.2113 -1.6369 -2.0381 9 1 2.0397 -1.3813 -1.3774 10 6 1.6320 -2.5071 -3.1943 11 6 2.8884 -3.0763 -3.2057 12 6 3.2744 -3.8867 -4.2748 13 6 4.6174 -4.5044 -4.2911 14 6 5.0979 -5.2968 -5.2699 15 6 6.3823 -5.7556 -5.0620 16 6 6.9525 -5.3463 -3.9251 17 6 8.3432 -5.7103 -3.4727 18 8 8.4442 -7.1293 -3.3379 19 14 8.6929 -4.9034 -1.8303 20 16 5.8381 -4.3140 -3.0390 21 6 2.3892 -4.1063 -5.3311 22 6 1.1374 -3.5264 -5.3100 23 6 0.7589 -2.7292 -4.2447 24 6 -0.0308 -2.1572 -1.2956 25 1 0.8994 0.5195 -2.4229 26 1 -0.1826 -0.5741 -3.3883 27 1 3.5706 -2.8986 -2.3876 28 1 4.5228 -5.5523 -6.1476 29 1 6.8894 -6.3983 -5.7664 30 1 9.0675 -5.3628 -4.2094 31 1 9.3144 -7.4360 -3.0486 32 1 7.7123 -5.3683 -0.8168 33 1 10.0729 -5.2286 -1.3883 34 1 2.6833 -4.7290 -6.1630 35 1 0.4516 -3.6951 -6.1270 36 1 -0.2219 -2.2773 -4.2331 37 1 -0.6800 -2.7785 -1.9126 38 1 0.1951 -2.6083 -0.3294 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081486_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:13:08 Heat of formation + Delta-G solvation = 169.036581 kcal Electronic energy + Delta-G solvation = -19776.042443 eV Core-core repulsion = 16796.217885 eV Total energy + Delta-G solvation = -2979.824558 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.17919 -41.45424 -39.92453 -38.54830 -37.96324 -34.31062 -33.39688 -31.28933 -29.13810 -28.22227 -27.69855 -25.13641 -24.49593 -24.06917 -22.52286 -21.89025 -21.43170 -20.54350 -19.50501 -19.36275 -19.25054 -18.54365 -17.87196 -17.71633 -17.30328 -16.79433 -16.45314 -16.12673 -15.99564 -15.66688 -15.41617 -15.24584 -14.95272 -14.72170 -14.48300 -14.32774 -14.07825 -14.02188 -13.75143 -13.40835 -13.34592 -13.14977 -12.99036 -12.38117 -11.63647 -11.24073 -10.98581 -10.27672 -9.85028 -5.84055 -1.51426 -1.22747 -0.85555 -0.40672 -0.30768 -0.01075 0.42921 0.46011 0.63446 0.82835 0.83198 0.95794 1.16827 1.32815 1.45061 1.59220 1.63918 1.96876 2.16274 2.36570 2.39651 2.51685 2.53738 2.57331 2.73432 2.78970 2.85700 2.98681 3.04086 3.10370 3.27682 3.38476 3.58959 3.65513 3.73925 3.77489 3.88423 4.20083 4.24586 4.34333 4.47067 4.50672 4.70515 4.79822 5.66845 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.004188 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.085613 B = 6684.903707 C = 7785.902355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 H 0.433 0.567 3 H 0.440 0.560 4 H 0.439 0.561 5 C -0.017 4.017 6 H 0.157 0.843 7 C -0.136 4.136 8 C -0.080 4.080 9 H 0.106 0.894 10 C -0.084 4.084 11 C -0.105 4.105 12 C 0.000 4.000 13 C -0.155 4.155 14 C -0.114 4.114 15 C -0.105 4.105 16 C -0.163 4.163 17 C -0.038 4.038 18 O -0.531 6.531 19 Si 0.646 3.354 20 S 0.126 5.874 21 C -0.095 4.095 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.134 4.134 25 H 0.097 0.903 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.386 0.614 32 H -0.237 1.237 33 H -0.236 1.236 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.019 18.511 12.557 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.262 0.738 3 H 0.269 0.731 4 H 0.268 0.732 5 C -0.122 4.122 6 H 0.174 0.826 7 C -0.174 4.174 8 C -0.098 4.098 9 H 0.125 0.875 10 C -0.084 4.084 11 C -0.124 4.124 12 C -0.002 4.002 13 C -0.272 4.272 14 C -0.145 4.145 15 C -0.135 4.135 16 C -0.280 4.280 17 C -0.150 4.150 18 O -0.339 6.339 19 Si 0.545 3.455 20 S 0.393 5.607 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.171 4.171 25 H 0.115 0.885 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.107 0.893 31 H 0.235 0.765 32 H -0.161 1.161 33 H -0.159 1.159 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.399 19.058 14.385 30.143 hybrid contribution 0.772 -1.819 -1.315 2.373 sum -17.627 17.239 13.069 27.905 Atomic orbital electron populations 1.42237 1.21107 1.20586 1.18074 0.73800 0.73118 0.73179 1.24432 1.04032 0.98144 0.85586 0.82557 1.23702 0.96861 1.00107 0.96686 1.21758 0.96904 0.94720 0.96449 0.87548 1.19070 0.94335 0.99544 0.95479 1.21022 0.95915 0.97560 0.97908 1.18057 0.90771 0.96445 0.94941 1.23011 0.97512 1.06358 1.00312 1.20390 0.95904 0.98396 0.99769 1.20047 0.94841 1.01035 0.97576 1.23752 0.99493 1.05686 0.99106 1.24054 0.94221 0.86339 1.10375 1.86594 1.38512 1.18983 1.89858 0.95521 0.83280 0.90186 0.76550 1.83843 1.05411 1.48546 1.22945 1.21370 0.93270 0.99059 0.97793 1.21160 0.96200 0.96420 0.98488 1.20976 0.99245 0.99400 0.93907 1.23664 0.97855 0.91869 1.03711 0.88482 0.85306 0.85884 0.83704 0.83511 0.89295 0.76532 1.16103 1.15902 0.85029 0.84959 0.85832 0.85448 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 23.25 4.51 -3.98 -0.02 23.23 16 2 H 0.43 -16.47 8.00 -39.29 -0.31 -16.79 16 3 H 0.44 -17.26 9.02 -39.29 -0.35 -17.61 16 4 H 0.44 -17.10 9.02 -39.29 -0.35 -17.45 16 5 C -0.02 0.55 4.96 -66.90 -0.33 0.22 16 6 H 0.16 -5.02 8.14 -51.93 -0.42 -5.44 16 7 C -0.14 3.69 7.12 -25.92 -0.18 3.51 16 8 C -0.08 1.95 3.62 -90.96 -0.33 1.62 16 9 H 0.11 -2.80 7.65 -51.93 -0.40 -3.20 16 10 C -0.08 1.49 5.28 -104.68 -0.55 0.93 16 11 C -0.11 1.49 9.26 -39.19 -0.36 1.13 16 12 C 0.00 0.00 5.87 -104.98 -0.62 -0.61 16 13 C -0.16 1.43 6.37 -36.88 -0.24 1.19 16 14 C -0.11 0.96 9.65 -40.90 -0.39 0.57 16 15 C -0.11 0.77 10.00 -41.30 -0.41 0.35 16 16 C -0.16 1.21 5.76 -35.93 -0.21 1.00 16 17 C -0.04 0.31 2.95 36.01 0.11 0.41 16 18 O -0.53 3.51 12.83 -35.23 -0.45 3.06 16 19 Si 0.65 -5.78 30.96 -169.99 -5.26 -11.05 16 20 S 0.13 -1.18 19.48 -107.50 -2.09 -3.28 16 21 C -0.10 1.10 9.54 -39.19 -0.37 0.73 16 22 C -0.10 1.41 10.03 -39.64 -0.40 1.02 16 23 C -0.12 1.93 8.61 -39.49 -0.34 1.59 16 24 C -0.13 3.59 7.34 -25.91 -0.19 3.40 16 25 H 0.10 -2.71 8.14 -51.93 -0.42 -3.14 16 26 H 0.13 -3.21 6.31 -51.93 -0.33 -3.54 16 27 H 0.12 -1.89 7.28 -52.49 -0.38 -2.27 16 28 H 0.15 -1.47 6.89 -52.48 -0.36 -1.83 16 29 H 0.15 -1.13 8.06 -52.49 -0.42 -1.56 16 30 H 0.09 -0.87 7.96 -51.93 -0.41 -1.28 16 31 H 0.39 -4.02 8.74 45.56 0.40 -3.62 16 32 H -0.24 1.51 7.11 56.52 0.40 1.91 16 33 H -0.24 1.63 7.11 56.52 0.40 2.03 16 34 H 0.13 -1.57 6.76 -52.48 -0.35 -1.93 16 35 H 0.13 -1.91 8.06 -52.49 -0.42 -2.33 16 36 H 0.12 -2.40 6.65 -52.49 -0.35 -2.75 16 37 H 0.13 -3.10 7.72 -51.93 -0.40 -3.50 16 38 H 0.10 -2.65 8.14 -51.93 -0.42 -3.08 16 LS Contribution 320.93 15.07 4.84 4.84 Total: 1.00 -40.77 320.93 -12.74 -53.51 By element: Atomic # 1 Polarization: -82.44 SS G_CDS: -4.92 Total: -87.37 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: -4.82 Total: 17.06 kcal Atomic # 7 Polarization: 23.25 SS G_CDS: -0.02 Total: 23.23 kcal Atomic # 8 Polarization: 3.51 SS G_CDS: -0.45 Total: 3.06 kcal Atomic # 14 Polarization: -5.78 SS G_CDS: -5.26 Total: -11.05 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.09 Total: -3.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -40.77 -12.74 -53.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.543 kcal (2) G-P(sol) polarization free energy of solvation -40.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds