Wall clock time and date at job start Mon Mar 8 2021 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00894 * 109.47425 * 1 2 4 4 H 1.00901 * 109.47196 * 239.99879 * 1 2 3 5 5 C 1.46900 * 109.47435 * 120.00315 * 1 2 3 6 6 H 1.08993 * 112.91155 * 191.25054 * 5 1 2 7 7 C 1.53778 * 113.61277 * 322.50111 * 5 1 2 8 8 C 1.53778 * 87.08449 * 89.11525 * 7 5 1 9 9 H 1.08998 * 113.61879 * 270.88747 * 8 7 5 10 10 C 1.50698 * 113.69240 * 139.98944 * 8 7 5 11 11 C 1.37943 * 119.92552 * 142.19363 * 10 8 7 12 12 C 1.39587 * 119.85044 * 179.73229 * 11 10 8 13 13 C 1.47832 * 120.14512 * 180.24865 * 12 11 10 14 14 C 1.34797 * 125.27614 * 180.29627 * 13 12 11 15 15 C 1.37959 * 114.70727 * 179.97438 * 14 13 12 16 16 C 1.33614 * 115.06474 * 0.02562 * 15 14 13 17 17 C 1.50701 * 125.11665 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47681 * 300.00359 * 17 16 15 19 19 Si 1.86299 * 109.46749 * 179.97438 * 17 16 15 20 20 S 1.75857 * 109.76040 * 359.77061 * 16 15 14 21 21 C 1.39552 * 119.71319 * 0.54107 * 12 11 10 22 22 C 1.37974 * 119.85503 * 359.73316 * 21 12 11 23 23 C 1.38340 * 120.14376 * 359.97438 * 22 21 12 24 24 C 1.53784 * 113.61442 * 59.99720 * 5 1 2 25 25 H 1.08999 * 113.61526 * 334.56860 * 7 5 1 26 26 H 1.08999 * 113.69218 * 203.67485 * 7 5 1 27 27 H 1.07995 * 120.07610 * 359.97438 * 11 10 8 28 28 H 1.08007 * 122.63819 * 359.97438 * 14 13 12 29 29 H 1.08001 * 122.46392 * 180.02562 * 15 14 13 30 30 H 1.09005 * 109.46937 * 60.00776 * 17 16 15 31 31 H 0.96698 * 114.00271 * 180.02562 * 18 17 16 32 32 H 1.48493 * 110.00385 * 60.00508 * 19 17 16 33 33 H 1.48506 * 109.99854 * 181.32167 * 19 17 16 34 34 H 1.08003 * 120.07229 * 179.75154 * 21 12 11 35 35 H 1.07999 * 119.93410 * 179.97438 * 22 21 12 36 36 H 1.07996 * 119.85845 * 179.97438 * 23 22 21 37 37 H 1.09004 * 113.61451 * 156.33974 * 24 5 1 38 38 H 1.08994 * 113.61477 * 25.43276 * 24 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4897 -0.6925 -1.1994 6 1 -1.5595 -0.5588 -1.3595 7 6 0.3588 -0.4265 -2.4539 8 6 1.2113 -1.6369 -2.0381 9 1 2.0397 -1.3813 -1.3774 10 6 1.6320 -2.5071 -3.1943 11 6 2.8884 -3.0763 -3.2057 12 6 3.2744 -3.8867 -4.2748 13 6 4.6174 -4.5044 -4.2911 14 6 5.0979 -5.2968 -5.2699 15 6 6.3823 -5.7556 -5.0620 16 6 6.9525 -5.3463 -3.9251 17 6 8.3432 -5.7103 -3.4727 18 8 8.4442 -7.1293 -3.3379 19 14 8.6929 -4.9034 -1.8303 20 16 5.8381 -4.3140 -3.0390 21 6 2.3892 -4.1063 -5.3311 22 6 1.1374 -3.5264 -5.3100 23 6 0.7589 -2.7292 -4.2447 24 6 -0.0308 -2.1572 -1.2956 25 1 0.8994 0.5195 -2.4229 26 1 -0.1826 -0.5741 -3.3883 27 1 3.5706 -2.8986 -2.3876 28 1 4.5228 -5.5523 -6.1476 29 1 6.8894 -6.3983 -5.7664 30 1 9.0675 -5.3628 -4.2094 31 1 9.3144 -7.4360 -3.0486 32 1 7.7123 -5.3683 -0.8168 33 1 10.0729 -5.2286 -1.3883 34 1 2.6833 -4.7290 -6.1630 35 1 0.4516 -3.6951 -6.1270 36 1 -0.2219 -2.2773 -4.2331 37 1 -0.6800 -2.7785 -1.9126 38 1 0.1951 -2.6083 -0.3294 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:13:07 Heat of formation + Delta-G solvation = 140.043573 kcal Electronic energy + Delta-G solvation = -19777.299674 eV Core-core repulsion = 16796.217885 eV Total energy + Delta-G solvation = -2981.081789 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92791 -40.14906 -39.09436 -37.64492 -35.88267 -33.28147 -32.02475 -30.40507 -27.01824 -26.79103 -26.30893 -24.14499 -23.35586 -22.73556 -20.71255 -19.81387 -19.00937 -18.75211 -18.49125 -18.21888 -17.50176 -16.88798 -16.64962 -16.26053 -16.03207 -15.76587 -15.14695 -14.76526 -14.69642 -14.43889 -14.18631 -14.04119 -13.83187 -13.50931 -13.36794 -13.01110 -12.83879 -12.74564 -12.58075 -12.37750 -11.95698 -11.68083 -11.61168 -11.42425 -10.79059 -10.48275 -9.76712 -9.56052 -8.98010 -5.16585 -0.66159 0.32574 0.34185 0.60222 0.67263 1.12958 1.49270 1.60875 1.69339 1.79969 2.71371 2.91028 3.10384 3.25835 3.40975 3.59260 3.69236 3.78155 3.80947 3.94022 4.06409 4.13237 4.19243 4.29413 4.34590 4.37857 4.42761 4.50075 4.60292 4.63160 4.72051 4.80074 4.86298 4.95677 4.98827 5.03490 5.06443 5.14158 5.24315 5.31908 5.47383 5.55769 5.56206 5.96617 6.44679 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.004188 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.085613 B = 6684.903707 C = 7785.902355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 H 0.441 0.559 3 H 0.454 0.546 4 H 0.452 0.548 5 C 0.031 3.969 6 H 0.170 0.830 7 C -0.142 4.142 8 C -0.096 4.096 9 H 0.132 0.868 10 C -0.070 4.070 11 C -0.117 4.117 12 C -0.036 4.036 13 C -0.147 4.147 14 C -0.144 4.144 15 C -0.117 4.117 16 C -0.193 4.193 17 C -0.050 4.050 18 O -0.556 6.556 19 Si 0.724 3.276 20 S 0.152 5.848 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.142 4.142 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.102 0.898 31 H 0.398 0.602 32 H -0.272 1.272 33 H -0.262 1.262 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.100 0.900 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 21.367 15.124 32.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.010 5.010 2 H 0.271 0.729 3 H 0.286 0.714 4 H 0.284 0.716 5 C -0.075 4.075 6 H 0.187 0.813 7 C -0.180 4.180 8 C -0.114 4.114 9 H 0.150 0.850 10 C -0.070 4.070 11 C -0.136 4.136 12 C -0.038 4.038 13 C -0.264 4.264 14 C -0.174 4.174 15 C -0.148 4.148 16 C -0.310 4.310 17 C -0.161 4.161 18 O -0.367 6.367 19 Si 0.625 3.375 20 S 0.419 5.581 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.179 4.179 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.151 0.849 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.120 0.880 31 H 0.250 0.750 32 H -0.198 1.198 33 H -0.186 1.186 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.119 0.881 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.323 21.925 16.950 34.366 hybrid contribution 1.249 -2.674 -2.094 3.619 sum -19.074 19.251 14.855 30.905 Atomic orbital electron populations 1.41979 1.21687 1.21083 1.16299 0.72915 0.71389 0.71632 1.23684 1.03901 0.94419 0.85494 0.81303 1.23613 0.97039 0.99208 0.98131 1.22127 0.99089 0.95321 0.94886 0.85002 1.19770 0.92327 0.98073 0.96823 1.21333 0.97665 0.97364 0.97248 1.18232 0.90180 0.98625 0.96747 1.23384 0.98375 1.05042 0.99630 1.20490 0.96023 0.99994 1.00866 1.20142 0.95407 1.01356 0.97874 1.23998 1.00397 1.06924 0.99704 1.24345 0.94302 0.85753 1.11709 1.86553 1.39853 1.20096 1.90152 0.94652 0.79917 0.89015 0.73919 1.83525 1.04577 1.47713 1.22288 1.21395 0.94510 1.00424 0.97969 1.21384 0.95625 0.97370 0.99919 1.21429 1.00742 0.97864 0.92969 1.23562 0.96055 0.94964 1.03355 0.87075 0.87611 0.84862 0.83310 0.84128 0.88004 0.75046 1.19828 1.18642 0.86344 0.84786 0.82707 0.88137 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 46.84 4.51 -166.50 -0.75 46.08 16 2 H 0.44 -34.61 8.00 -89.69 -0.72 -35.33 16 3 H 0.45 -36.82 9.02 -89.70 -0.81 -37.63 16 4 H 0.45 -36.31 9.02 -89.69 -0.81 -37.12 16 5 C 0.03 -2.04 4.96 45.44 0.23 -1.81 16 6 H 0.17 -11.26 8.14 -2.39 -0.02 -11.27 16 7 C -0.14 7.86 7.12 31.12 0.22 8.08 16 8 C -0.10 4.72 3.62 -11.01 -0.04 4.68 16 9 H 0.13 -7.15 7.65 -2.39 -0.02 -7.16 16 10 C -0.07 2.38 5.28 -19.90 -0.11 2.28 16 11 C -0.12 3.08 9.26 22.53 0.21 3.29 16 12 C -0.04 0.67 5.87 -20.10 -0.12 0.55 16 13 C -0.15 2.14 6.37 24.02 0.15 2.29 16 14 C -0.14 1.75 9.65 21.41 0.21 1.96 16 15 C -0.12 1.21 10.00 21.15 0.21 1.42 16 16 C -0.19 2.23 5.76 24.64 0.14 2.37 16 17 C -0.05 0.69 2.95 71.24 0.21 0.90 16 18 O -0.56 5.79 12.83 -148.98 -1.91 3.87 16 19 Si 0.72 -11.62 30.96 68.60 2.12 -9.50 16 20 S 0.15 -2.46 19.48 -56.49 -1.10 -3.56 16 21 C -0.12 2.30 9.54 22.52 0.21 2.51 16 22 C -0.12 2.96 10.03 22.23 0.22 3.18 16 23 C -0.11 3.50 8.61 22.33 0.19 3.69 16 24 C -0.14 7.70 7.34 31.12 0.23 7.93 16 25 H 0.11 -6.41 8.14 -2.39 -0.02 -6.43 16 26 H 0.11 -5.27 6.31 -2.39 -0.02 -5.28 16 27 H 0.13 -3.91 7.28 -2.91 -0.02 -3.93 16 28 H 0.15 -2.19 6.89 -2.91 -0.02 -2.21 16 29 H 0.14 -1.50 8.06 -2.91 -0.02 -1.52 16 30 H 0.10 -1.75 7.96 -2.38 -0.02 -1.77 16 31 H 0.40 -7.31 8.74 -74.06 -0.65 -7.96 16 32 H -0.27 2.85 7.11 99.48 0.71 3.56 16 33 H -0.26 3.16 7.11 99.48 0.71 3.87 16 34 H 0.12 -2.13 6.76 -2.91 -0.02 -2.15 16 35 H 0.13 -3.40 8.06 -2.91 -0.02 -3.42 16 36 H 0.16 -5.91 6.65 -2.91 -0.02 -5.93 16 37 H 0.10 -4.83 7.72 -2.39 -0.02 -4.85 16 38 H 0.11 -6.08 8.14 -2.39 -0.02 -6.10 16 Total: 1.00 -91.10 320.93 -1.29 -92.39 By element: Atomic # 1 Polarization: -170.80 SS G_CDS: -1.83 Total: -172.62 kcal Atomic # 6 Polarization: 41.15 SS G_CDS: 2.17 Total: 43.33 kcal Atomic # 7 Polarization: 46.84 SS G_CDS: -0.75 Total: 46.08 kcal Atomic # 8 Polarization: 5.79 SS G_CDS: -1.91 Total: 3.87 kcal Atomic # 14 Polarization: -11.62 SS G_CDS: 2.12 Total: -9.50 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -1.10 Total: -3.56 kcal Total: -91.10 -1.29 -92.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.438 kcal (2) G-P(sol) polarization free energy of solvation -91.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds