Wall clock time and date at job start Mon Mar 8 2021 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00894 * 1 3 3 H 1.00906 * 109.47313 * 1 2 4 4 H 1.00900 * 109.47392 * 240.00084 * 1 2 3 5 5 C 1.46905 * 109.47148 * 119.99608 * 1 2 3 6 6 H 1.09002 * 109.47057 * 180.02562 * 5 1 2 7 7 C 1.53000 * 109.47141 * 300.00169 * 5 1 2 8 8 C 1.52993 * 109.46880 * 179.97438 * 7 5 1 9 9 C 1.53003 * 109.47395 * 299.99807 * 8 7 5 10 10 H 1.08998 * 109.46973 * 300.00493 * 9 8 7 11 11 N 1.46499 * 109.47006 * 179.97438 * 9 8 7 12 12 C 1.38552 * 119.99802 * 85.00305 * 11 9 8 13 13 C 1.39732 * 120.47077 * 359.97438 * 12 11 9 14 14 C 1.38235 * 118.56047 * 180.02562 * 13 12 11 15 15 N 1.32364 * 119.32462 * 359.72957 * 14 13 12 16 16 C 1.32854 * 120.90022 * 0.54565 * 15 14 13 17 17 C 1.47543 * 119.21267 * 179.71387 * 16 15 14 18 18 C 1.34956 * 125.27453 * 359.73482 * 17 16 15 19 19 C 1.37736 * 114.71836 * 180.02562 * 18 17 16 20 20 C 1.33775 * 115.08251 * 359.97438 * 19 18 17 21 21 C 1.50707 * 125.12627 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.46442 * 65.00472 * 21 20 19 23 23 Si 1.86293 * 109.47256 * 185.00039 * 21 20 19 24 24 S 1.75857 * 109.75016 * 0.26569 * 20 19 18 25 25 N 1.32814 * 120.47179 * 179.97438 * 12 11 9 26 26 C 1.53000 * 109.46949 * 60.00235 * 9 8 7 27 27 C 1.52996 * 109.46889 * 60.00132 * 5 1 2 28 28 H 1.09004 * 109.46999 * 299.99569 * 7 5 1 29 29 H 1.08998 * 109.47072 * 59.99526 * 7 5 1 30 30 H 1.08999 * 109.47216 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47463 * 60.00001 * 8 7 5 32 32 H 0.97001 * 120.00480 * 265.00136 * 11 9 8 33 33 H 1.08002 * 120.71613 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.33986 * 180.02562 * 14 13 12 35 35 H 1.07994 * 122.64413 * 0.04034 * 18 17 16 36 36 H 1.08005 * 122.45606 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47345 * 305.00543 * 21 20 19 38 38 H 0.96700 * 114.00311 * 60.00230 * 22 21 20 39 39 H 1.48506 * 109.99973 * 180.02562 * 23 21 20 40 40 H 1.48493 * 110.00375 * 301.32185 * 23 21 20 41 41 H 1.09002 * 109.47212 * 59.99832 * 26 9 8 42 42 H 1.08997 * 109.47349 * 180.02562 * 26 9 8 43 43 H 1.08999 * 109.47302 * 59.99597 * 27 5 1 44 44 H 1.09002 * 109.47234 * 299.99846 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8238 5 6 -0.4897 -0.6924 -1.1995 6 1 -1.5797 -0.6920 -1.1997 7 6 0.0203 0.0289 -2.4487 8 6 -0.4891 -0.6927 -3.6979 9 6 0.0214 -2.1350 -3.6977 10 1 1.1113 -2.1346 -3.6974 11 7 -0.4671 -2.8260 -4.8936 12 6 0.2284 -2.7204 -6.0873 13 6 1.3964 -1.9571 -6.1617 14 6 2.0586 -1.8785 -7.3726 15 7 1.5746 -2.5281 -8.4194 16 6 0.4589 -3.2428 -8.3228 17 6 -0.0508 -3.9469 -9.5150 18 6 0.5246 -3.9297 -10.7356 19 6 -0.1368 -4.6646 -11.6946 20 6 -1.2454 -5.2822 -11.2712 21 6 -2.1397 -6.1419 -12.1270 22 8 -1.4221 -7.3036 -12.5485 23 14 -3.6334 -6.6585 -11.1408 24 16 -1.5063 -4.9331 -9.5675 25 7 -0.2056 -3.3434 -7.1770 26 6 -0.4887 -2.8563 -2.4485 27 6 0.0203 -2.1349 -1.1996 28 1 -0.3431 1.0566 -2.4487 29 1 1.1103 0.0289 -2.4487 30 1 -0.1262 -0.1786 -4.5879 31 1 -1.5791 -0.6931 -3.6982 32 1 -1.2773 -3.3575 -4.8498 33 1 1.7732 -1.4390 -5.2921 34 1 2.9641 -1.2969 -7.4624 35 1 1.4323 -3.3830 -10.9441 36 1 0.2138 -4.7368 -12.7136 37 1 -2.4598 -5.5754 -13.0014 38 1 -1.1063 -7.8564 -11.8207 39 1 -4.5230 -7.5073 -11.9734 40 1 -3.2088 -7.4044 -9.9290 41 1 -1.5787 -2.8567 -2.4487 42 1 -0.1247 -3.8837 -2.4481 43 1 -0.3430 -2.6488 -0.3096 44 1 1.1103 -2.1349 -1.1996 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_17085348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:15:29 Heat of formation + Delta-G solvation = 135.668767 kcal Electronic energy + Delta-G solvation = -25641.357965 eV Core-core repulsion = 21997.195881 eV Total energy + Delta-G solvation = -3644.162085 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05488 -41.04681 -39.41412 -38.37471 -37.56240 -35.60383 -34.20352 -32.59573 -32.02509 -30.79760 -29.02465 -27.63809 -24.98757 -24.78693 -24.01410 -23.81780 -22.79215 -21.44392 -20.61724 -19.29231 -19.12418 -18.49838 -18.29202 -17.75334 -17.53142 -17.38188 -16.52520 -16.47763 -16.36733 -16.30248 -16.16109 -15.62615 -15.36339 -15.00947 -14.62888 -14.27320 -14.15471 -14.02486 -13.85026 -13.70636 -13.57709 -13.39718 -12.84301 -12.73310 -12.58344 -12.43217 -12.35232 -12.23990 -11.83265 -11.62278 -11.58367 -11.40971 -11.21225 -10.78880 -10.32825 -9.70064 -9.56431 -9.13664 -5.09954 -0.85750 0.29380 0.31126 0.41209 0.73435 1.17962 1.49819 1.55890 1.65229 1.84471 1.86260 2.84350 2.87680 3.11526 3.25573 3.28524 3.40438 3.59872 3.62933 3.65344 3.72909 3.86212 3.94559 4.09103 4.11675 4.17897 4.28719 4.36562 4.37831 4.45452 4.49033 4.50773 4.54799 4.61935 4.63310 4.69637 4.85368 5.00828 5.05268 5.05597 5.06814 5.09389 5.15041 5.22901 5.32401 5.35325 5.72842 6.11325 6.35836 6.48733 7.13480 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.002536 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.525385 B =11038.723944 C =11995.476808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.444 0.556 3 H 0.450 0.550 4 H 0.450 0.550 5 C 0.050 3.950 6 H 0.149 0.851 7 C -0.136 4.136 8 C -0.138 4.138 9 C 0.141 3.859 10 H 0.095 0.905 11 N -0.705 5.705 12 C 0.430 3.570 13 C -0.283 4.283 14 C 0.165 3.835 15 N -0.573 5.573 16 C 0.413 3.587 17 C -0.169 4.169 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.212 4.212 21 C -0.039 4.039 22 O -0.539 6.539 23 Si 0.715 3.285 24 S 0.184 5.816 25 N -0.598 5.598 26 C -0.128 4.128 27 C -0.134 4.134 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.182 0.818 34 H 0.196 0.804 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.388 0.612 39 H -0.274 1.274 40 H -0.260 1.260 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 19.968 40.234 44.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.282 0.718 5 C -0.056 4.056 6 H 0.167 0.833 7 C -0.175 4.175 8 C -0.177 4.177 9 C 0.037 3.963 10 H 0.113 0.887 11 N -0.337 5.337 12 C 0.185 3.815 13 C -0.310 4.310 14 C 0.003 3.997 15 N -0.293 5.293 16 C 0.146 3.854 17 C -0.288 4.288 18 C -0.114 4.114 19 C -0.150 4.150 20 C -0.331 4.331 21 C -0.151 4.151 22 O -0.348 6.348 23 Si 0.617 3.383 24 S 0.450 5.550 25 N -0.323 5.323 26 C -0.166 4.166 27 C -0.173 4.173 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.244 0.756 33 H 0.199 0.801 34 H 0.213 0.787 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.158 0.842 38 H 0.237 0.763 39 H -0.199 1.199 40 H -0.185 1.185 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.228 18.664 40.300 44.413 hybrid contribution 2.041 -0.381 -0.835 2.238 sum 2.269 18.283 39.465 43.553 Atomic orbital electron populations 1.42241 1.22042 1.21072 1.16654 0.72575 0.71863 0.71836 1.22866 1.04625 0.93339 0.84819 0.83342 1.21969 1.03895 1.00458 0.91133 1.21968 1.02205 0.94290 0.99276 1.21517 1.00158 0.91869 0.82753 0.88735 1.44769 1.28814 1.54339 1.05745 1.18768 0.88665 0.87633 0.86476 1.22486 0.98401 1.08025 1.02107 1.23533 0.98003 0.91121 0.86995 1.68426 1.13553 1.12750 1.34572 1.19825 0.87011 0.89889 0.88638 1.22428 1.02632 1.08315 0.95387 1.20533 1.01259 0.99039 0.90576 1.20174 0.95172 0.97834 1.01798 1.25363 1.02686 1.06736 0.98317 1.24588 0.99879 0.86994 1.03663 1.86619 1.74217 1.36506 1.37429 0.94468 0.77711 0.88380 0.77740 1.84159 1.22160 1.44117 1.04523 1.67867 1.36407 1.28288 0.99735 1.21708 1.02537 0.99877 0.92515 1.21942 1.03858 0.92631 0.98820 0.87607 0.87808 0.92268 0.91015 0.75624 0.80115 0.78723 0.82868 0.82692 0.84243 0.76267 1.19915 1.18537 0.90086 0.91466 0.87150 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 49.23 4.15 -168.67 -0.70 48.53 16 2 H 0.44 -36.41 8.90 -89.70 -0.80 -37.21 16 3 H 0.45 -37.15 8.96 -89.69 -0.80 -37.96 16 4 H 0.45 -37.26 8.96 -89.69 -0.80 -38.06 16 5 C 0.05 -3.33 3.03 44.91 0.14 -3.19 16 6 H 0.15 -9.97 8.14 -2.39 -0.02 -9.99 16 7 C -0.14 8.02 5.43 30.59 0.17 8.18 16 8 C -0.14 6.22 5.46 30.59 0.17 6.39 16 9 C 0.14 -5.82 2.15 44.99 0.10 -5.72 16 10 H 0.09 -3.99 6.51 -2.39 -0.02 -4.01 16 11 N -0.71 20.65 5.23 -324.10 -1.69 18.96 16 12 C 0.43 -8.58 7.68 133.24 1.02 -7.56 16 13 C -0.28 6.73 8.93 22.63 0.20 6.93 16 14 C 0.16 -2.98 11.28 84.61 0.95 -2.03 16 15 N -0.57 5.35 9.96 -189.81 -1.89 3.46 16 16 C 0.41 -3.19 7.58 137.16 1.04 -2.15 16 17 C -0.17 1.20 6.42 23.97 0.15 1.36 16 18 C -0.08 0.64 9.81 21.40 0.21 0.85 16 19 C -0.12 1.11 10.03 21.14 0.21 1.32 16 20 C -0.21 2.16 5.71 24.67 0.14 2.30 16 21 C -0.04 0.44 2.96 71.24 0.21 0.65 16 22 O -0.54 4.38 12.88 -148.98 -1.92 2.46 16 23 Si 0.72 -8.57 30.97 68.60 2.12 -6.45 16 24 S 0.18 -1.83 20.30 -56.49 -1.15 -2.98 16 25 N -0.60 6.76 10.16 -187.13 -1.90 4.86 16 26 C -0.13 5.95 5.39 30.58 0.16 6.11 16 27 C -0.13 7.98 5.43 30.58 0.17 8.14 16 28 H 0.11 -6.34 8.14 -2.39 -0.02 -6.36 16 29 H 0.10 -6.29 8.14 -2.39 -0.02 -6.31 16 30 H 0.06 -2.25 7.75 -2.39 -0.02 -2.27 16 31 H 0.07 -3.05 8.14 -2.39 -0.02 -3.07 16 32 H 0.41 -11.47 8.73 -92.71 -0.81 -12.28 16 33 H 0.18 -6.09 6.28 -2.91 -0.02 -6.11 16 34 H 0.20 -4.85 8.06 -2.91 -0.02 -4.87 16 35 H 0.15 -1.36 7.95 -2.91 -0.02 -1.38 16 36 H 0.16 -1.73 8.06 -2.91 -0.02 -1.75 16 37 H 0.14 -1.88 7.96 -2.39 -0.02 -1.90 16 38 H 0.39 -5.28 8.70 -74.06 -0.64 -5.92 16 39 H -0.27 1.44 7.11 99.48 0.71 2.14 16 40 H -0.26 2.30 7.11 99.48 0.71 3.00 16 41 H 0.08 -3.69 8.14 -2.39 -0.02 -3.71 16 42 H 0.07 -2.71 8.14 -2.39 -0.02 -2.73 16 43 H 0.11 -6.73 8.14 -2.39 -0.02 -6.75 16 44 H 0.10 -6.17 8.14 -2.39 -0.02 -6.19 16 Total: 1.00 -98.43 367.11 -4.83 -103.26 By element: Atomic # 1 Polarization: -190.95 SS G_CDS: -2.74 Total: -193.69 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 5.04 Total: 21.58 kcal Atomic # 7 Polarization: 82.00 SS G_CDS: -6.19 Total: 75.82 kcal Atomic # 8 Polarization: 4.38 SS G_CDS: -1.92 Total: 2.46 kcal Atomic # 14 Polarization: -8.57 SS G_CDS: 2.12 Total: -6.45 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -1.15 Total: -2.98 kcal Total: -98.43 -4.83 -103.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_17085348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.927 kcal (2) G-P(sol) polarization free energy of solvation -98.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds