Wall clock time and date at job start Mon Mar 8 2021 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00902 * 1 3 3 H 1.00900 * 109.46225 * 1 2 4 4 H 1.00901 * 109.47319 * 240.00672 * 1 2 3 5 5 C 1.46894 * 109.47058 * 120.00288 * 1 2 3 6 6 H 1.09002 * 109.47104 * 300.00187 * 5 1 2 7 7 C 1.52997 * 109.47515 * 60.00455 * 5 1 2 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 5 1 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 11 11 N 1.46492 * 109.47204 * 180.02562 * 9 8 7 12 12 C 1.39007 * 119.99860 * 155.00137 * 11 9 8 13 13 C 1.39298 * 120.01176 * 359.72600 * 12 11 9 14 14 N 1.32078 * 120.17796 * 179.70371 * 13 12 11 15 15 C 1.31997 * 120.21691 * 0.57329 * 14 13 12 16 16 C 1.39636 * 120.02247 * 359.70405 * 15 14 13 17 17 C 1.47650 * 120.09148 * 179.97438 * 16 15 14 18 18 C 1.34900 * 125.27415 * 5.01681 * 17 16 15 19 19 C 1.37831 * 114.71403 * 179.97438 * 18 17 16 20 20 C 1.33717 * 115.07180 * 0.02562 * 19 18 17 21 21 C 1.50702 * 125.12099 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47099 * 64.99608 * 21 20 19 23 23 Si 1.86300 * 109.47053 * 184.99775 * 21 20 19 24 24 S 1.75862 * 109.75584 * 359.76579 * 20 19 18 25 25 N 1.32582 * 120.01071 * 180.02562 * 12 11 9 26 26 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 27 27 C 1.52999 * 109.46927 * 180.02562 * 5 1 2 28 28 H 1.09002 * 109.47153 * 59.99762 * 7 5 1 29 29 H 1.09001 * 109.46832 * 299.99953 * 7 5 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 8 7 5 31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00353 * 335.00390 * 11 9 8 33 33 H 1.08003 * 119.91322 * 359.97438 * 13 12 11 34 34 H 1.08009 * 119.99300 * 179.68613 * 15 14 13 35 35 H 1.08006 * 122.64280 * 359.97438 * 18 17 16 36 36 H 1.07996 * 122.46808 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46471 * 304.99870 * 21 20 19 38 38 H 0.96701 * 114.00062 * 180.02562 * 22 21 20 39 39 H 1.48502 * 109.99841 * 299.99806 * 23 21 20 40 40 H 1.48497 * 110.00053 * 61.31671 * 23 21 20 41 41 H 1.09002 * 109.47153 * 60.00231 * 26 9 8 42 42 H 1.09001 * 109.47289 * 180.02562 * 26 9 8 43 43 H 1.09000 * 109.47486 * 59.99528 * 27 5 1 44 44 H 1.09002 * 109.46716 * 299.99610 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9514 0.0000 4 1 -0.3364 -0.4755 0.8239 5 6 -0.4896 -0.6925 -1.1994 6 1 -0.1263 -0.1787 -2.0894 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4893 -2.8561 -2.4489 9 6 -2.0193 -2.8560 -2.4495 10 1 -2.3830 -3.3698 -1.5597 11 7 -2.5071 -3.5469 -3.6456 12 6 -3.7675 -4.1332 -3.6441 13 6 -4.5645 -4.0689 -2.5035 14 7 -5.7649 -4.6197 -2.5004 15 6 -6.2121 -5.2442 -3.5739 16 6 -5.4182 -5.3189 -4.7202 17 6 -5.9166 -6.0176 -5.9216 18 6 -7.1535 -6.5368 -6.0640 19 6 -7.3877 -7.1429 -7.2795 20 6 -6.3560 -7.1245 -8.1300 21 6 -6.3631 -7.7194 -9.5146 22 8 -7.2980 -7.0124 -10.3320 23 14 -4.6603 -7.5824 -10.2580 24 16 -4.9917 -6.2962 -7.3915 25 7 -4.2091 -4.7590 -4.7264 26 6 -2.5292 -1.4135 -2.4496 27 6 -2.0196 -0.6920 -1.1996 28 1 -0.3431 -2.6488 -0.3093 29 1 1.1102 -2.1351 -1.1993 30 1 -0.1256 -2.3422 -3.3386 31 1 -0.1264 -3.8839 -2.4486 32 1 -1.9507 -3.5953 -4.4387 33 1 -4.2017 -3.5634 -1.6207 34 1 -7.1923 -5.6978 -3.5657 35 1 -7.9014 -6.4818 -5.2866 36 1 -8.3348 -7.5991 -7.5269 37 1 -6.6513 -8.7690 -9.4574 38 1 -7.3557 -7.3425 -11.2391 39 1 -4.2557 -6.1560 -10.3412 40 1 -3.6841 -8.3400 -9.4344 41 1 -2.1654 -0.8996 -3.3394 42 1 -3.6192 -1.4134 -2.4496 43 1 -2.3826 0.3358 -1.1998 44 1 -2.3832 -1.2056 -0.3096 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_17085452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:55 Heat of formation + Delta-G solvation = 134.699390 kcal Electronic energy + Delta-G solvation = -25645.039925 eV Core-core repulsion = 22000.835805 eV Total energy + Delta-G solvation = -3644.204120 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.26805 -41.08833 -39.39628 -38.32353 -37.52974 -35.78292 -34.96608 -32.59594 -32.06588 -30.53145 -28.89389 -27.64620 -25.25194 -24.88364 -24.07262 -23.79943 -22.87623 -21.48539 -20.51424 -19.28972 -18.83826 -18.50442 -18.42066 -18.26918 -17.86218 -17.57376 -17.35680 -16.78364 -16.44795 -16.35395 -15.84805 -15.38898 -15.26869 -14.94473 -14.48965 -14.30944 -14.21631 -14.14869 -14.03105 -13.80291 -13.43482 -13.28829 -12.86973 -12.78553 -12.72663 -12.68160 -12.46438 -12.32478 -12.28423 -12.01810 -11.89711 -11.54280 -11.30120 -10.44003 -10.33676 -9.78438 -9.75238 -8.92658 -5.28018 -1.01005 0.08608 0.24845 0.28234 0.66691 1.13124 1.46000 1.52409 1.59244 1.79327 1.82335 2.66626 2.86403 3.08296 3.21886 3.25592 3.30969 3.34084 3.58822 3.63208 3.76945 3.80745 3.88027 3.88717 4.00939 4.07302 4.08122 4.18760 4.32191 4.33058 4.38995 4.40578 4.47090 4.57736 4.59866 4.65770 4.79454 4.84059 4.97297 5.00121 5.02215 5.05373 5.08511 5.19447 5.24414 5.25961 5.64502 6.13965 6.37469 6.76247 6.79709 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.002522 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.275757 B =11098.946496 C =12010.243942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.450 0.550 3 H 0.450 0.550 4 H 0.444 0.556 5 C 0.050 3.950 6 H 0.149 0.851 7 C -0.134 4.134 8 C -0.126 4.126 9 C 0.139 3.861 10 H 0.095 0.905 11 N -0.708 5.708 12 C 0.362 3.638 13 C -0.006 4.006 14 N -0.414 5.414 15 C -0.007 4.007 16 C 0.189 3.811 17 C -0.158 4.158 18 C -0.096 4.096 19 C -0.108 4.108 20 C -0.185 4.185 21 C -0.040 4.040 22 O -0.560 6.560 23 Si 0.748 3.252 24 S 0.096 5.904 25 N -0.536 5.536 26 C -0.139 4.139 27 C -0.137 4.137 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.406 0.594 33 H 0.200 0.800 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.111 0.889 38 H 0.407 0.593 39 H -0.282 1.282 40 H -0.274 1.274 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.116 21.037 23.016 37.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.282 0.718 3 H 0.281 0.719 4 H 0.275 0.725 5 C -0.056 4.056 6 H 0.167 0.833 7 C -0.172 4.172 8 C -0.165 4.165 9 C 0.036 3.964 10 H 0.113 0.887 11 N -0.340 5.340 12 C 0.120 3.880 13 C -0.175 4.175 14 N -0.126 5.126 15 C -0.168 4.168 16 C 0.050 3.950 17 C -0.276 4.276 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.303 4.303 21 C -0.153 4.153 22 O -0.371 6.371 23 Si 0.652 3.348 24 S 0.363 5.637 25 N -0.261 5.261 26 C -0.179 4.179 27 C -0.175 4.175 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.217 0.783 34 H 0.201 0.799 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.129 0.871 38 H 0.259 0.741 39 H -0.208 1.208 40 H -0.200 1.200 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 23.315 21.946 23.135 39.503 hybrid contribution -1.628 -0.595 0.050 1.734 sum 21.687 21.351 23.185 38.259 Atomic orbital electron populations 1.42231 1.22115 1.20932 1.16690 0.71798 0.71862 0.72545 1.22853 0.96600 0.96035 0.90125 0.83330 1.21959 1.03767 0.92526 0.98991 1.21709 0.91769 1.02577 1.00458 1.21551 0.95634 0.92545 0.86719 0.88694 1.44793 1.12826 1.58121 1.18260 1.19545 0.88841 0.89802 0.89837 1.23669 0.91060 1.03864 0.98930 1.68265 1.13299 1.04341 1.26687 1.23530 1.02462 1.02250 0.88572 1.19555 0.89807 0.93294 0.92365 1.22789 0.98654 1.09085 0.97074 1.20716 0.95591 0.97517 0.99071 1.20300 1.00223 1.00986 0.92314 1.24274 0.98032 1.07132 1.00842 1.24080 1.05138 0.98030 0.88007 1.86454 1.62284 1.60529 1.27802 0.93961 0.73325 0.79668 0.87817 1.84546 1.16869 1.53961 1.08306 1.67917 1.15152 1.14195 1.28790 1.22000 1.01356 0.94604 0.99935 1.21986 0.92361 1.04041 0.99131 0.87877 0.86994 0.90131 0.91353 0.75773 0.78322 0.79894 0.80494 0.81499 0.87110 0.74121 1.20813 1.19978 0.90943 0.92526 0.87572 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.47 4.15 -168.69 -0.70 47.77 16 2 H 0.45 -36.84 8.96 -89.69 -0.80 -37.64 16 3 H 0.45 -36.63 8.96 -89.69 -0.80 -37.43 16 4 H 0.44 -35.90 8.90 -89.69 -0.80 -36.70 16 5 C 0.05 -3.29 3.02 44.92 0.14 -3.15 16 6 H 0.15 -9.79 8.14 -2.39 -0.02 -9.80 16 7 C -0.13 7.81 5.43 30.59 0.17 7.97 16 8 C -0.13 5.70 5.39 30.60 0.16 5.87 16 9 C 0.14 -5.48 2.14 44.99 0.10 -5.39 16 10 H 0.10 -3.84 6.45 -2.39 -0.02 -3.85 16 11 N -0.71 19.15 5.25 -324.27 -1.70 17.44 16 12 C 0.36 -6.33 7.64 133.05 1.02 -5.31 16 13 C -0.01 0.11 10.02 84.91 0.85 0.96 16 14 N -0.41 5.24 10.47 -193.60 -2.03 3.21 16 15 C -0.01 0.08 10.71 85.01 0.91 0.99 16 16 C 0.19 -1.55 6.75 41.75 0.28 -1.27 16 17 C -0.16 1.09 6.41 23.99 0.15 1.24 16 18 C -0.10 1.00 9.64 21.41 0.21 1.21 16 19 C -0.11 1.00 10.03 21.15 0.21 1.21 16 20 C -0.19 1.27 5.74 24.66 0.14 1.41 16 21 C -0.04 0.47 2.95 71.24 0.21 0.68 16 22 O -0.56 6.47 12.86 -148.98 -1.92 4.56 16 23 Si 0.75 -8.96 30.97 68.60 2.12 -6.84 16 24 S 0.10 -0.42 20.35 -56.49 -1.15 -1.57 16 25 N -0.54 4.99 10.30 -181.98 -1.87 3.12 16 26 C -0.14 6.00 5.44 30.61 0.17 6.16 16 27 C -0.14 7.81 5.44 30.61 0.17 7.97 16 28 H 0.10 -6.11 8.14 -2.39 -0.02 -6.13 16 29 H 0.11 -6.72 8.14 -2.39 -0.02 -6.74 16 30 H 0.08 -3.55 8.14 -2.39 -0.02 -3.57 16 31 H 0.07 -2.67 8.14 -2.39 -0.02 -2.69 16 32 H 0.41 -10.45 8.73 -92.71 -0.81 -11.25 16 33 H 0.20 -5.74 6.10 -2.91 -0.02 -5.76 16 34 H 0.18 -2.84 6.77 -2.91 -0.02 -2.86 16 35 H 0.18 -2.97 6.91 -2.91 -0.02 -2.99 16 36 H 0.17 -2.17 8.06 -2.91 -0.02 -2.19 16 37 H 0.11 -1.84 7.96 -2.39 -0.02 -1.86 16 38 H 0.41 -8.91 8.74 -74.06 -0.65 -9.56 16 39 H -0.28 1.30 7.11 99.48 0.71 2.01 16 40 H -0.27 1.85 7.11 99.48 0.71 2.55 16 41 H 0.07 -2.94 8.14 -2.39 -0.02 -2.96 16 42 H 0.06 -2.01 7.71 -2.39 -0.02 -2.03 16 43 H 0.11 -6.18 8.14 -2.39 -0.02 -6.19 16 44 H 0.10 -6.12 8.14 -2.39 -0.02 -6.14 16 Total: 1.00 -100.45 364.72 -5.10 -105.55 By element: Atomic # 1 Polarization: -191.07 SS G_CDS: -2.74 Total: -193.80 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 4.88 Total: 20.56 kcal Atomic # 7 Polarization: 77.85 SS G_CDS: -6.30 Total: 71.55 kcal Atomic # 8 Polarization: 6.47 SS G_CDS: -1.92 Total: 4.56 kcal Atomic # 14 Polarization: -8.96 SS G_CDS: 2.12 Total: -6.84 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.15 Total: -1.57 kcal Total: -100.45 -5.10 -105.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_17085452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.253 kcal (2) G-P(sol) polarization free energy of solvation -100.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds