Wall clock time and date at job start Mon Mar 8 2021 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00895 * 109.47354 * 1 2 4 4 H 1.00901 * 109.46900 * 239.99130 * 1 2 3 5 5 C 1.46904 * 109.46631 * 119.99892 * 1 2 3 6 6 H 1.09009 * 109.46998 * 299.99696 * 5 1 2 7 7 C 1.52997 * 109.47584 * 59.99284 * 5 1 2 8 8 C 1.52996 * 109.47349 * 179.97438 * 7 5 1 9 9 C 1.52999 * 109.47176 * 300.00517 * 8 7 5 10 10 H 1.09005 * 109.47351 * 299.99503 * 9 8 7 11 11 N 1.46503 * 109.47268 * 179.97438 * 9 8 7 12 12 C 1.34778 * 120.00048 * 154.99740 * 11 9 8 13 13 O 1.21557 * 119.99901 * 0.02562 * 12 11 9 14 14 C 1.47846 * 119.99493 * 179.97438 * 12 11 9 15 15 C 1.40055 * 120.04009 * 179.97438 * 14 12 11 16 16 C 1.38287 * 118.04739 * 180.02562 * 15 14 12 17 17 C 1.40086 * 117.99706 * 0.02562 * 16 15 14 18 18 C 1.47396 * 120.09633 * 180.02562 * 17 16 15 19 19 C 1.35081 * 125.27858 * 179.97438 * 18 17 16 20 20 C 1.37687 * 114.70413 * 179.97438 * 19 18 17 21 21 C 1.33824 * 115.08842 * 359.97438 * 20 19 18 22 22 C 1.50707 * 125.11745 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47348 * 300.00689 * 22 21 20 24 24 Si 1.86292 * 109.47060 * 180.02562 * 22 21 20 25 25 S 1.75851 * 109.76063 * 359.76351 * 21 20 19 26 26 N 1.33328 * 119.80810 * 0.27275 * 17 16 15 27 27 N 1.28365 * 122.07797 * 359.42080 * 26 17 16 28 28 C 1.53003 * 109.47582 * 59.99988 * 9 8 7 29 29 C 1.52999 * 109.46999 * 179.97438 * 5 1 2 30 30 H 1.09009 * 109.46617 * 60.00179 * 7 5 1 31 31 H 1.08996 * 109.47172 * 300.00642 * 7 5 1 32 32 H 1.09002 * 109.47460 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47240 * 60.00197 * 8 7 5 34 34 H 0.97000 * 119.99492 * 334.99455 * 11 9 8 35 35 H 1.08004 * 120.97567 * 0.05433 * 15 14 12 36 36 H 1.07999 * 121.00479 * 180.02562 * 16 15 14 37 37 H 1.08000 * 122.64696 * 0.02562 * 19 18 17 38 38 H 1.07999 * 122.45245 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46969 * 60.00503 * 22 21 20 40 40 H 0.96699 * 113.99950 * 300.00142 * 23 22 21 41 41 H 1.48506 * 109.99895 * 58.68619 * 24 22 21 42 42 H 1.48501 * 109.99956 * 179.97438 * 24 22 21 43 43 H 1.08999 * 109.46751 * 59.99276 * 28 9 8 44 44 H 1.08993 * 109.47585 * 180.02562 * 28 9 8 45 45 H 1.08992 * 109.47313 * 299.99654 * 29 5 1 46 46 H 1.08999 * 109.47131 * 59.99972 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3363 -0.4758 0.8238 5 6 -0.4896 -0.6925 -1.1995 6 1 -0.1262 -0.1786 -2.0895 7 6 0.0206 -2.1349 -1.1997 8 6 -0.4898 -2.8563 -2.4487 9 6 -2.0198 -2.8564 -2.4481 10 1 -2.3829 -3.3702 -1.5580 11 7 -2.5086 -3.5466 -3.6443 12 6 -3.7305 -4.1152 -3.6423 13 8 -4.4272 -4.0550 -2.6480 14 6 -4.2239 -4.8113 -4.8497 15 6 -5.4933 -5.4030 -4.8485 16 6 -5.9132 -6.0437 -5.9998 17 6 -5.0425 -6.0620 -7.0970 18 6 -5.4433 -6.7315 -8.3475 19 6 -4.6896 -6.8118 -9.4656 20 6 -5.2787 -7.4898 -10.5092 21 6 -6.5041 -7.9650 -10.2574 22 6 -7.3521 -8.7377 -11.2347 23 8 -7.5984 -7.9344 -12.3907 24 14 -8.9731 -9.1844 -10.4326 25 16 -6.9735 -7.5571 -8.6125 26 7 -3.8482 -5.4764 -7.0052 27 7 -3.4629 -4.8775 -5.9372 28 6 -2.5300 -1.4139 -2.4480 29 6 -2.0196 -0.6931 -1.1993 30 1 -0.3428 -2.6489 -0.3097 31 1 1.1105 -2.1348 -1.1996 32 1 -0.1268 -3.8841 -2.4486 33 1 -0.1269 -2.3425 -3.3388 34 1 -1.9528 -3.5942 -4.4379 35 1 -6.1259 -5.3597 -3.9741 36 1 -6.8832 -6.5157 -6.0515 37 1 -3.7025 -6.3791 -9.5352 38 1 -4.7877 -7.6281 -11.4611 39 1 -6.8292 -9.6475 -11.5293 40 1 -8.0619 -7.1068 -12.2030 41 1 -9.6811 -7.9534 -9.9982 42 1 -9.8188 -9.9462 -11.3864 43 1 -2.1670 -0.9001 -3.3381 44 1 -3.6200 -1.4140 -2.4472 45 1 -2.3825 -1.2073 -0.3094 46 1 -2.3833 0.3344 -1.1990 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:07 Heat of formation + Delta-G solvation = 102.250376 kcal Electronic energy + Delta-G solvation = -28649.178577 eV Core-core repulsion = 24556.659030 eV Total energy + Delta-G solvation = -4092.519547 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.45933 -41.37540 -40.32426 -39.44707 -37.71768 -37.46703 -35.10437 -34.43585 -34.12891 -32.02436 -31.26642 -29.51241 -27.80233 -26.38353 -25.30471 -24.20052 -23.92692 -23.52792 -22.08802 -21.54707 -20.84836 -19.54682 -19.17125 -18.74666 -18.46514 -18.28801 -17.59440 -17.46879 -17.16659 -16.86750 -16.83243 -16.37030 -16.20385 -16.05751 -15.81908 -15.22347 -15.14628 -14.96882 -14.79642 -14.25698 -14.16972 -14.02352 -13.86641 -13.68507 -13.65752 -13.37774 -13.03670 -12.92186 -12.64170 -12.50142 -12.47144 -12.26392 -11.76039 -11.72414 -11.69949 -11.57493 -11.53416 -11.37865 -11.09411 -10.82730 -10.28512 -9.63084 -9.56952 -5.11200 -1.31801 -0.53258 -0.07764 0.17976 0.59328 1.13920 1.27779 1.48105 1.54863 1.69012 1.79691 1.86244 2.39521 2.51268 2.88582 3.10167 3.23048 3.25508 3.27084 3.43218 3.54579 3.61005 3.65654 3.67106 3.69279 3.87370 3.94115 4.09951 4.18927 4.21630 4.35474 4.36918 4.43646 4.48084 4.49745 4.56802 4.61679 4.63872 4.69555 4.72180 4.86127 4.98079 5.00326 5.05538 5.07355 5.07877 5.15440 5.21375 5.29392 5.38580 6.16904 6.35656 6.82679 7.17856 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.001682 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.673581 B =16643.045061 C =17119.356423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.053 3.947 6 H 0.156 0.844 7 C -0.136 4.136 8 C -0.127 4.127 9 C 0.130 3.870 10 H 0.080 0.920 11 N -0.700 5.700 12 C 0.583 3.417 13 O -0.552 6.552 14 C -0.002 4.002 15 C -0.053 4.053 16 C -0.115 4.115 17 C 0.162 3.838 18 C -0.186 4.186 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.199 4.199 22 C -0.039 4.039 23 O -0.539 6.539 24 Si 0.715 3.285 25 S 0.177 5.823 26 N -0.252 5.252 27 N -0.207 5.207 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.418 0.582 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.389 0.611 41 H -0.257 1.257 42 H -0.277 1.277 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.760 23.556 29.455 43.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.273 0.727 5 C -0.053 4.053 6 H 0.173 0.827 7 C -0.174 4.174 8 C -0.166 4.166 9 C 0.027 3.973 10 H 0.098 0.902 11 N -0.350 5.350 12 C 0.366 3.634 13 O -0.429 6.429 14 C -0.149 4.149 15 C -0.081 4.081 16 C -0.143 4.143 17 C 0.020 3.980 18 C -0.304 4.304 19 C -0.108 4.108 20 C -0.150 4.150 21 C -0.317 4.317 22 C -0.151 4.151 23 O -0.347 6.347 24 Si 0.616 3.384 25 S 0.443 5.557 26 N -0.098 5.098 27 N -0.054 5.054 28 C -0.172 4.172 29 C -0.175 4.175 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.200 0.800 36 H 0.198 0.802 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.159 0.841 40 H 0.239 0.761 41 H -0.182 1.182 42 H -0.203 1.203 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.778 23.217 29.855 43.152 hybrid contribution -0.244 0.509 -1.524 1.625 sum 20.533 23.727 28.330 42.275 Atomic orbital electron populations 1.42227 1.22134 1.20903 1.16650 0.71676 0.71839 0.72709 1.22848 0.96078 0.96114 0.90301 0.82655 1.21972 1.03942 0.92552 0.98954 1.21755 0.91225 1.02880 1.00723 1.21465 0.95737 0.92913 0.87183 0.90196 1.45959 1.16156 1.54369 1.18556 1.17419 0.82661 0.78287 0.85060 1.90827 1.57340 1.60906 1.33818 1.22992 0.94867 1.01064 0.95939 1.22579 0.94836 0.90997 0.99711 1.22668 1.01887 0.98190 0.91597 1.20738 0.91694 0.92844 0.92675 1.22566 1.01245 1.10106 0.96524 1.20626 1.01340 0.97857 0.91002 1.20183 0.94326 0.99413 1.01051 1.25290 1.00349 1.07225 0.98856 1.24588 1.06924 0.95900 0.87688 1.86632 1.79682 1.36986 1.31412 0.94597 0.75366 0.82822 0.85572 1.83969 1.13990 1.50088 1.07608 1.73433 1.13319 1.06709 1.16291 1.73119 1.27506 1.09228 0.95528 1.21850 1.00890 0.94348 1.00161 1.21931 0.92845 1.03819 0.98891 0.88658 0.86426 0.91053 0.89197 0.74483 0.80001 0.80228 0.82740 0.82648 0.84108 0.76114 1.18217 1.20302 0.90058 0.93508 0.88944 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.51 4.15 -168.67 -0.70 46.81 16 2 H 0.45 -36.52 8.96 -89.69 -0.80 -37.32 16 3 H 0.45 -36.10 8.96 -89.70 -0.80 -36.90 16 4 H 0.44 -34.85 8.90 -89.69 -0.80 -35.65 16 5 C 0.05 -3.36 3.03 44.91 0.14 -3.23 16 6 H 0.16 -10.14 8.14 -2.38 -0.02 -10.16 16 7 C -0.14 7.63 5.43 30.59 0.17 7.80 16 8 C -0.13 5.53 5.39 30.59 0.16 5.69 16 9 C 0.13 -4.59 2.45 44.99 0.11 -4.48 16 10 H 0.08 -2.53 7.58 -2.38 -0.02 -2.54 16 11 N -0.70 18.29 5.07 -445.39 -2.26 16.03 16 12 C 0.58 -10.40 7.77 86.79 0.67 -9.73 16 13 O -0.55 7.23 16.04 -3.89 -0.06 7.17 16 14 C 0.00 0.03 6.83 41.97 0.29 0.31 16 15 C -0.05 0.88 9.71 22.72 0.22 1.10 16 16 C -0.11 1.90 9.71 22.73 0.22 2.12 16 17 C 0.16 -1.99 6.83 41.78 0.29 -1.70 16 18 C -0.19 2.34 6.38 23.96 0.15 2.50 16 19 C -0.08 0.92 9.84 21.41 0.21 1.13 16 20 C -0.12 1.55 10.00 21.14 0.21 1.76 16 21 C -0.20 2.75 5.73 24.68 0.14 2.89 16 22 C -0.04 0.54 2.96 71.24 0.21 0.75 16 23 O -0.54 5.63 12.86 -148.98 -1.92 3.71 16 24 Si 0.71 -9.92 30.96 68.60 2.12 -7.79 16 25 S 0.18 -2.75 19.51 -56.49 -1.10 -3.85 16 26 N -0.25 2.50 11.14 -48.54 -0.54 1.96 16 27 N -0.21 2.64 10.73 -48.45 -0.52 2.12 16 28 C -0.13 5.23 5.49 30.58 0.17 5.39 16 29 C -0.14 7.30 5.43 30.58 0.17 7.46 16 30 H 0.09 -5.32 8.14 -2.38 -0.02 -5.34 16 31 H 0.12 -6.97 8.14 -2.39 -0.02 -6.99 16 32 H 0.07 -2.72 8.14 -2.39 -0.02 -2.74 16 33 H 0.09 -3.97 8.14 -2.39 -0.02 -3.99 16 34 H 0.42 -11.35 7.94 -92.71 -0.74 -12.08 16 35 H 0.18 -3.66 7.71 -2.91 -0.02 -3.68 16 36 H 0.18 -3.88 7.35 -2.91 -0.02 -3.90 16 37 H 0.16 -2.00 7.99 -2.91 -0.02 -2.02 16 38 H 0.16 -2.20 8.06 -2.91 -0.02 -2.22 16 39 H 0.14 -2.22 7.96 -2.39 -0.02 -2.24 16 40 H 0.39 -6.25 8.70 -74.06 -0.64 -6.90 16 41 H -0.26 2.83 7.11 99.48 0.71 3.54 16 42 H -0.28 1.70 7.11 99.48 0.71 2.41 16 43 H 0.08 -3.21 8.14 -2.39 -0.02 -3.23 16 44 H 0.05 -1.38 8.14 -2.39 -0.02 -1.40 16 45 H 0.09 -4.89 8.14 -2.39 -0.02 -4.91 16 46 H 0.11 -5.99 8.14 -2.39 -0.02 -6.01 16 Total: 1.00 -94.23 391.04 -4.12 -98.35 By element: Atomic # 1 Polarization: -181.61 SS G_CDS: -2.68 Total: -184.28 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 3.53 Total: 19.77 kcal Atomic # 7 Polarization: 70.94 SS G_CDS: -4.02 Total: 66.92 kcal Atomic # 8 Polarization: 12.86 SS G_CDS: -1.98 Total: 10.88 kcal Atomic # 14 Polarization: -9.92 SS G_CDS: 2.12 Total: -7.79 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -1.10 Total: -3.85 kcal Total: -94.23 -4.12 -98.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.600 kcal (2) G-P(sol) polarization free energy of solvation -94.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds