Wall clock time and date at job start Mon Mar 8 2021 07:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00895 * 1 3 3 H 1.00901 * 109.47639 * 1 2 4 4 H 1.00896 * 109.47232 * 239.99755 * 1 2 3 5 5 C 1.46901 * 109.46878 * 119.99855 * 1 2 3 6 6 H 1.08996 * 109.47558 * 179.97438 * 5 1 2 7 7 C 1.52998 * 109.47342 * 299.99934 * 5 1 2 8 8 C 1.53006 * 109.47378 * 179.97438 * 7 5 1 9 9 C 1.52994 * 109.47286 * 300.00286 * 8 7 5 10 10 H 1.08996 * 109.47103 * 299.99941 * 9 8 7 11 11 N 1.46496 * 109.47139 * 179.97438 * 9 8 7 12 12 C 1.34773 * 120.00102 * 84.99871 * 11 9 8 13 13 O 1.21596 * 119.99965 * 0.02562 * 12 11 9 14 14 C 1.47550 * 120.00316 * 180.02562 * 12 11 9 15 15 C 1.40196 * 120.83476 * 180.02562 * 14 12 11 16 16 N 1.31844 * 119.05032 * 179.97438 * 15 14 12 17 17 C 1.33057 * 120.86317 * 0.02562 * 16 15 14 18 18 C 1.47248 * 119.08106 * 179.97438 * 17 16 15 19 19 C 1.36325 * 125.44500 * 180.02562 * 18 17 16 20 20 C 1.37760 * 113.30332 * 179.97438 * 19 18 17 21 21 C 1.33621 * 115.06609 * 0.02562 * 20 19 18 22 22 C 1.50704 * 124.52867 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47056 * 65.01803 * 22 21 20 24 24 Si 1.86295 * 109.47341 * 185.02200 * 22 21 20 25 25 S 1.70618 * 110.95074 * 359.97438 * 21 20 19 26 26 N 1.33049 * 121.83698 * 0.25074 * 17 16 15 27 27 C 1.31843 * 120.86565 * 359.48281 * 26 17 16 28 28 C 1.52998 * 109.47146 * 59.99572 * 9 8 7 29 29 C 1.52997 * 109.47724 * 300.00108 * 28 9 8 30 30 H 1.08999 * 109.47449 * 300.00035 * 7 5 1 31 31 H 1.09006 * 109.46903 * 60.00066 * 7 5 1 32 32 H 1.08997 * 109.47070 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46511 * 60.00486 * 8 7 5 34 34 H 0.97002 * 120.00047 * 264.99942 * 11 9 8 35 35 H 1.08007 * 120.47784 * 359.97438 * 15 14 12 36 36 H 1.08002 * 123.35082 * 0.03614 * 19 18 17 37 37 H 1.07998 * 122.47105 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46746 * 305.02091 * 22 21 20 39 39 H 0.96701 * 113.99876 * 180.02562 * 23 22 21 40 40 H 1.48498 * 110.00189 * 178.67702 * 24 22 21 41 41 H 1.48502 * 110.00086 * 300.00185 * 24 22 21 42 42 H 1.08004 * 120.47600 * 180.26196 * 27 26 17 43 43 H 1.09008 * 109.47201 * 60.00361 * 28 9 8 44 44 H 1.08999 * 109.47449 * 179.97438 * 28 9 8 45 45 H 1.08993 * 109.47492 * 179.97438 * 29 28 9 46 46 H 1.09001 * 109.46652 * 300.00212 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4896 -0.6925 -1.1995 6 1 -1.5796 -0.6929 -1.1994 7 6 0.0204 0.0288 -2.4487 8 6 -0.4891 -0.6928 -3.6980 9 6 0.0214 -2.1351 -3.6977 10 1 1.1114 -2.1347 -3.6975 11 7 -0.4669 -2.8262 -4.8936 12 6 0.2097 -2.7235 -6.0547 13 8 1.2256 -2.0576 -6.1095 14 6 -0.2824 -3.4190 -7.2593 15 6 0.4079 -3.3246 -8.4760 16 7 -0.0630 -3.9610 -9.5302 17 6 -1.1769 -4.6843 -9.4497 18 6 -1.6680 -5.3785 -10.6518 19 6 -2.7898 -6.1504 -10.7162 20 6 -3.0154 -6.6807 -11.9675 21 6 -2.1087 -6.3535 -12.8929 22 6 -2.1473 -6.8146 -14.3271 23 8 -3.2977 -6.2657 -14.9732 24 14 -0.6083 -6.2402 -15.2057 25 16 -0.9014 -5.3440 -12.2339 26 7 -1.8624 -4.7934 -8.3146 27 6 -1.4521 -4.1907 -7.2161 28 6 -0.4886 -2.8564 -2.4485 29 6 0.0208 -2.1349 -1.1992 30 1 -0.3430 1.0564 -2.4488 31 1 1.1104 0.0288 -2.4487 32 1 -0.1261 -0.1787 -4.5879 33 1 -1.5791 -0.6931 -3.6982 34 1 -1.2771 -3.3577 -4.8498 35 1 1.3124 -2.7390 -8.5486 36 1 -3.4379 -6.3277 -9.8706 37 1 -3.8627 -7.3142 -12.1846 38 1 -2.1982 -7.9031 -14.3575 39 1 -3.3870 -6.5216 -15.9014 40 1 -0.6190 -6.7157 -16.6125 41 1 -0.5270 -4.7578 -15.1712 42 1 -2.0112 -4.2869 -6.2970 43 1 -1.5786 -2.8568 -2.4487 44 1 -0.1253 -3.8840 -2.4485 45 1 -0.3429 -2.6485 -0.3093 46 1 1.1109 -2.1345 -1.1990 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:43 Heat of formation + Delta-G solvation = 94.548486 kcal Electronic energy + Delta-G solvation = -28659.790344 eV Core-core repulsion = 24566.936817 eV Total energy + Delta-G solvation = -4092.853526 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.45351 -41.34103 -40.27489 -39.37600 -37.67563 -37.41211 -35.34325 -34.64362 -33.83961 -31.98866 -31.47560 -29.45440 -27.89049 -25.90409 -25.22908 -24.19195 -24.05636 -23.42418 -21.95693 -21.50481 -20.77856 -19.35022 -19.31859 -18.69030 -18.55325 -18.34371 -18.20775 -17.44922 -17.37190 -17.01531 -16.63422 -16.32138 -15.93683 -15.89755 -15.82607 -15.12909 -15.00621 -14.94856 -14.62824 -14.24646 -14.19557 -14.15521 -13.87889 -13.64899 -13.44169 -13.35012 -13.00428 -12.88392 -12.81666 -12.47742 -12.43728 -12.28156 -12.23459 -11.76441 -11.67112 -11.47818 -11.29316 -11.20913 -10.63171 -10.58485 -10.24539 -9.66460 -9.51558 -5.12098 -1.30984 -0.15627 -0.05885 0.23412 0.75055 1.13304 1.42086 1.48606 1.57693 1.75115 1.81985 1.90502 2.42373 2.60818 2.90425 3.12049 3.19186 3.24272 3.27080 3.46638 3.60692 3.67015 3.71764 3.73398 3.81478 3.92515 3.96658 4.13151 4.24396 4.24923 4.35968 4.38277 4.39690 4.49719 4.54073 4.58811 4.64477 4.73264 4.86250 4.89570 5.00416 5.00531 5.08142 5.09179 5.10791 5.19805 5.25210 5.30186 5.42697 5.61989 6.26837 6.48019 6.66323 6.96120 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.001686 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.531099 B =16607.930200 C =17067.923224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 H 0.442 0.558 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.139 4.139 8 C -0.133 4.133 9 C 0.133 3.867 10 H 0.073 0.927 11 N -0.708 5.708 12 C 0.580 3.420 13 O -0.565 6.565 14 C -0.260 4.260 15 C 0.207 3.793 16 N -0.542 5.542 17 C 0.408 3.592 18 C -0.208 4.208 19 C -0.055 4.055 20 C -0.129 4.129 21 C -0.204 4.204 22 C -0.038 4.038 23 O -0.552 6.552 24 Si 0.696 3.304 25 S 0.245 5.755 26 N -0.521 5.521 27 C 0.204 3.796 28 C -0.126 4.126 29 C -0.138 4.138 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.188 0.812 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.114 0.886 39 H 0.400 0.600 40 H -0.252 1.252 41 H -0.277 1.277 42 H 0.221 0.779 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 14.289 43.169 45.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.272 0.728 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.177 4.177 8 C -0.173 4.173 9 C 0.030 3.970 10 H 0.091 0.909 11 N -0.360 5.360 12 C 0.365 3.635 13 O -0.444 6.444 14 C -0.268 4.268 15 C 0.040 3.960 16 N -0.256 5.256 17 C 0.146 3.854 18 C -0.327 4.327 19 C -0.090 4.090 20 C -0.160 4.160 21 C -0.324 4.324 22 C -0.150 4.150 23 O -0.363 6.363 24 Si 0.598 3.402 25 S 0.514 5.486 26 N -0.235 5.235 27 C 0.036 3.964 28 C -0.164 4.164 29 C -0.176 4.176 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.253 0.747 35 H 0.204 0.796 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.132 0.868 39 H 0.252 0.748 40 H -0.176 1.176 41 H -0.203 1.203 42 H 0.237 0.763 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.136 0.864 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.102 15.595 41.425 44.372 hybrid contribution -1.966 -0.457 -0.190 2.027 sum 1.136 15.138 41.234 43.940 Atomic orbital electron populations 1.42252 1.21968 1.21106 1.16742 0.72798 0.71896 0.71679 1.22871 1.04874 0.93263 0.84265 0.82409 1.21945 1.03169 1.00685 0.91910 1.21858 1.02400 0.94393 0.98625 1.21354 0.99679 0.92138 0.83847 0.90863 1.45843 1.29221 1.52105 1.08853 1.17579 0.83012 0.79712 0.83159 1.90831 1.25977 1.42305 1.85307 1.21813 1.01261 1.06468 0.97291 1.23686 0.96957 0.89261 0.86068 1.68609 1.13645 1.10489 1.32848 1.20455 0.86187 0.88355 0.90393 1.22775 1.03639 1.10135 0.96144 1.20970 0.95163 0.94057 0.98804 1.20150 1.01067 1.03253 0.91507 1.23759 1.02733 1.05779 1.00161 1.24161 0.97776 1.02231 0.90830 1.86549 1.43588 1.75758 1.30394 0.94623 0.81579 0.80500 0.83515 1.83349 1.23665 1.42807 0.98799 1.68496 1.32705 1.23044 0.99272 1.24115 0.90046 0.85191 0.97084 1.21758 1.03168 0.99884 0.91631 1.21987 1.03429 0.92726 0.99507 0.87672 0.89391 0.93905 0.89563 0.74673 0.79553 0.81314 0.82373 0.86804 0.74844 1.17581 1.20311 0.76308 0.88557 0.90734 0.86416 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.16 4.15 -168.67 -0.70 47.46 16 2 H 0.44 -35.00 8.90 -89.70 -0.80 -35.80 16 3 H 0.45 -36.35 8.96 -89.69 -0.80 -37.15 16 4 H 0.45 -36.94 8.96 -89.70 -0.80 -37.74 16 5 C 0.05 -3.48 3.03 44.92 0.14 -3.35 16 6 H 0.16 -10.65 8.14 -2.39 -0.02 -10.67 16 7 C -0.14 7.56 5.43 30.60 0.17 7.73 16 8 C -0.13 5.54 5.49 30.59 0.17 5.71 16 9 C 0.13 -5.15 2.45 44.99 0.11 -5.04 16 10 H 0.07 -2.43 7.58 -2.39 -0.02 -2.45 16 11 N -0.71 22.84 5.03 -445.71 -2.24 20.59 16 12 C 0.58 -12.42 7.74 86.70 0.67 -11.75 16 13 O -0.56 7.64 16.09 -4.02 -0.06 7.58 16 14 C -0.26 4.81 5.91 -19.87 -0.12 4.69 16 15 C 0.21 -2.59 10.87 85.17 0.93 -1.66 16 16 N -0.54 4.14 10.11 -188.58 -1.91 2.23 16 17 C 0.41 -3.27 7.57 136.94 1.04 -2.23 16 18 C -0.21 1.50 6.46 24.19 0.16 1.65 16 19 C -0.05 0.53 9.96 21.71 0.22 0.75 16 20 C -0.13 1.21 10.00 21.11 0.21 1.42 16 21 C -0.20 1.70 5.57 24.64 0.14 1.84 16 22 C -0.04 0.42 2.93 71.24 0.21 0.63 16 23 O -0.55 4.74 12.86 -148.98 -1.92 2.83 16 24 Si 0.70 -7.46 30.88 68.60 2.12 -5.34 16 25 S 0.24 -1.80 19.89 -56.49 -1.12 -2.92 16 26 N -0.52 6.73 9.99 -188.58 -1.88 4.84 16 27 C 0.20 -4.30 10.80 85.17 0.92 -3.38 16 28 C -0.13 5.96 5.39 30.59 0.16 6.12 16 29 C -0.14 8.04 5.43 30.60 0.17 8.21 16 30 H 0.10 -5.90 8.14 -2.39 -0.02 -5.92 16 31 H 0.09 -4.67 8.14 -2.38 -0.02 -4.69 16 32 H 0.04 -1.31 8.14 -2.39 -0.02 -1.33 16 33 H 0.09 -3.71 8.14 -2.38 -0.02 -3.73 16 34 H 0.42 -15.68 6.72 -92.71 -0.62 -16.30 16 35 H 0.19 -2.65 7.73 -2.91 -0.02 -2.68 16 36 H 0.17 -2.22 8.00 -2.91 -0.02 -2.25 16 37 H 0.16 -1.92 8.06 -2.91 -0.02 -1.94 16 38 H 0.11 -1.82 7.96 -2.38 -0.02 -1.84 16 39 H 0.40 -6.65 8.74 -74.06 -0.65 -7.30 16 40 H -0.25 1.98 7.11 99.48 0.71 2.69 16 41 H -0.28 0.98 7.11 99.48 0.71 1.68 16 42 H 0.22 -7.15 6.52 -2.91 -0.02 -7.16 16 43 H 0.10 -4.76 8.14 -2.38 -0.02 -4.78 16 44 H 0.07 -3.17 8.14 -2.39 -0.02 -3.19 16 45 H 0.12 -7.21 8.14 -2.39 -0.02 -7.23 16 46 H 0.09 -5.20 8.14 -2.39 -0.02 -5.22 16 Total: 1.00 -101.38 389.68 -5.00 -106.38 By element: Atomic # 1 Polarization: -192.43 SS G_CDS: -2.56 Total: -194.99 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.28 Total: 11.34 kcal Atomic # 7 Polarization: 81.86 SS G_CDS: -6.73 Total: 75.12 kcal Atomic # 8 Polarization: 12.38 SS G_CDS: -1.98 Total: 10.40 kcal Atomic # 14 Polarization: -7.46 SS G_CDS: 2.12 Total: -5.34 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -1.12 Total: -2.92 kcal Total: -101.38 -5.00 -106.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.931 kcal (2) G-P(sol) polarization free energy of solvation -101.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds