Wall clock time and date at job start Mon Mar 8 2021 07:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21588 * 119.99747 * 359.97438 * 12 11 9 14 14 C 1.47550 * 119.99710 * 180.02562 * 12 11 9 15 15 C 1.40321 * 120.42342 * 180.02562 * 14 12 11 16 16 C 1.36880 * 118.52715 * 179.97438 * 15 14 12 17 17 C 1.39834 * 119.33209 * 359.97438 * 16 15 14 18 18 C 1.47395 * 119.58837 * 180.02562 * 17 16 15 19 19 C 1.35075 * 125.27594 * 179.72533 * 18 17 16 20 20 C 1.37696 * 114.70634 * 179.79380 * 19 18 17 21 21 C 1.33822 * 115.08692 * 0.49648 * 20 19 18 22 22 C 1.50696 * 125.11851 * 179.69559 * 21 20 19 23 23 O 1.42903 * 109.47329 * 300.01513 * 22 21 20 24 24 Si 1.86309 * 109.47129 * 180.02562 * 22 21 20 25 25 S 1.75865 * 109.76017 * 359.73403 * 21 20 19 26 26 N 1.33093 * 120.81711 * 359.97438 * 17 16 15 27 27 C 1.31480 * 121.59589 * 359.75931 * 26 17 16 28 28 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 29 29 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 30 30 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 31 31 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 34 34 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 35 35 H 1.07997 * 120.74018 * 359.94790 * 15 14 12 36 36 H 1.08001 * 120.33561 * 180.02562 * 16 15 14 37 37 H 1.07998 * 122.65030 * 359.97438 * 19 18 17 38 38 H 1.07998 * 122.45421 * 180.20190 * 20 19 18 39 39 H 1.08993 * 109.47266 * 60.02028 * 22 21 20 40 40 H 0.96699 * 113.99885 * 300.00442 * 23 22 21 41 41 H 1.48500 * 109.99742 * 58.67968 * 24 22 21 42 42 H 1.48494 * 110.00121 * 179.97438 * 24 22 21 43 43 H 1.08002 * 119.71181 * 180.26450 * 27 26 17 44 44 H 1.08992 * 109.47554 * 59.99639 * 28 9 8 45 45 H 1.09004 * 109.47108 * 179.97438 * 28 9 8 46 46 H 1.09002 * 109.47045 * 60.00157 * 29 5 1 47 47 H 1.09001 * 109.47375 * 300.00082 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2269 -4.2626 -4.8350 14 6 -0.2797 -4.5784 -6.5901 15 6 0.4182 -5.6798 -7.1086 16 6 -0.0720 -6.2962 -8.2282 17 6 -1.2451 -5.8143 -8.8173 18 6 -1.7783 -6.4741 -10.0227 19 6 -2.9006 -6.1093 -10.6798 20 6 -3.1954 -6.8760 -11.7849 21 6 -2.3335 -7.8692 -12.0328 22 6 -2.4418 -8.8461 -13.1750 23 8 -3.6719 -9.5660 -13.0712 24 14 -1.0149 -10.0422 -13.1067 25 16 -1.0560 -7.8633 -10.8241 26 7 -1.8866 -4.7679 -8.3026 27 6 -1.4492 -4.1534 -7.2257 28 6 -0.4889 -2.8566 -2.4481 29 6 0.0202 -2.1351 -1.1992 30 1 1.1101 0.0286 -2.4487 31 1 -0.3431 1.0562 -2.4487 32 1 -0.1258 -0.1796 -4.5879 33 1 -1.5794 -0.6935 -3.6979 34 1 -1.2767 -2.5233 -5.3325 35 1 1.3223 -6.0331 -6.6352 36 1 0.4415 -7.1466 -8.6517 37 1 -3.5165 -5.2798 -10.3651 38 1 -4.0615 -6.6923 -12.4034 39 1 -2.4167 -8.3041 -14.1203 40 1 -3.7631 -10.0727 -12.2527 41 1 -1.0197 -10.7647 -11.8093 42 1 -1.1105 -11.0114 -14.2276 43 1 -1.9962 -3.3097 -6.8314 44 1 -1.5789 -2.8569 -2.4481 45 1 -0.1256 -3.8843 -2.4480 46 1 -0.3430 -2.6488 -0.3091 47 1 1.1102 -2.1351 -1.1993 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_17119696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:13:41 Heat of formation + Delta-G solvation = 79.693067 kcal Electronic energy + Delta-G solvation = -28527.983055 eV Core-core repulsion = 24499.911260 eV Total energy + Delta-G solvation = -4028.071795 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.137 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96521 -41.15155 -40.14649 -39.31595 -37.61434 -37.39536 -34.75962 -33.90466 -33.42190 -32.00331 -31.02260 -29.34460 -27.49935 -25.07412 -25.03981 -24.16727 -23.84040 -23.20760 -21.81961 -21.47665 -20.56997 -19.39745 -19.03039 -18.46063 -18.28083 -18.18956 -17.53591 -17.36568 -16.91146 -16.71543 -16.40215 -16.32240 -16.29937 -15.91946 -15.41503 -15.18671 -15.05304 -14.88215 -14.59668 -14.20847 -14.14286 -13.91425 -13.76837 -13.73586 -13.62740 -13.40937 -13.35371 -12.89691 -12.58116 -12.47956 -12.45394 -12.24724 -11.71099 -11.67968 -11.52879 -11.38326 -11.26051 -10.98052 -10.76169 -10.70665 -10.22654 -9.60225 -9.32173 -5.11459 -1.13646 0.02774 0.07544 0.25515 0.65282 1.15470 1.46608 1.48664 1.57469 1.83050 1.84860 1.96976 2.69320 2.90433 3.11070 3.25879 3.26907 3.35903 3.49113 3.60882 3.61596 3.63751 3.72252 3.80149 3.91656 3.96289 3.98263 4.12075 4.23176 4.30860 4.36963 4.39869 4.46011 4.49044 4.50644 4.58094 4.63985 4.72110 4.78707 4.82173 4.90881 4.99200 5.03616 5.07038 5.08967 5.09367 5.20564 5.24313 5.30614 5.34872 5.43932 6.30910 6.35082 6.57969 7.00336 Molecular weight = 361.14amu Principal moments of inertia in cm(-1) A = 0.032855 B = 0.001675 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.023806 B =16712.391851 C =17189.934246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.442 0.558 3 H 0.451 0.549 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.711 5.711 12 C 0.571 3.429 13 O -0.571 6.571 14 C -0.207 4.207 15 C -0.014 4.014 16 C -0.176 4.176 17 C 0.218 3.782 18 C -0.181 4.181 19 C -0.083 4.083 20 C -0.118 4.118 21 C -0.206 4.206 22 C -0.037 4.037 23 O -0.539 6.539 24 Si 0.713 3.287 25 S 0.159 5.841 26 N -0.495 5.495 27 C 0.154 3.846 28 C -0.133 4.133 29 C -0.138 4.138 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.414 0.586 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.141 0.859 40 H 0.388 0.612 41 H -0.260 1.260 42 H -0.276 1.276 43 H 0.199 0.801 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.106 0.894 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 28.222 36.073 45.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.283 0.717 4 H 0.281 0.719 5 C -0.052 4.052 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.164 4.164 9 C 0.029 3.971 10 H 0.089 0.911 11 N -0.363 5.363 12 C 0.358 3.642 13 O -0.451 6.451 14 C -0.212 4.212 15 C -0.040 4.040 16 C -0.197 4.197 17 C 0.082 3.918 18 C -0.298 4.298 19 C -0.115 4.115 20 C -0.149 4.149 21 C -0.324 4.324 22 C -0.149 4.149 23 O -0.347 6.347 24 Si 0.615 3.385 25 S 0.425 5.575 26 N -0.204 5.204 27 C -0.006 4.006 28 C -0.172 4.172 29 C -0.177 4.177 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.252 0.748 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.238 0.762 41 H -0.185 1.185 42 H -0.201 1.201 43 H 0.216 0.784 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.124 0.876 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.453 26.675 35.616 44.720 hybrid contribution -1.547 -0.251 0.074 1.569 sum 2.906 26.424 35.690 44.502 Atomic orbital electron populations 1.42245 1.21967 1.21107 1.16704 0.72793 0.71663 0.71875 1.22860 1.04869 0.92587 0.84926 0.82407 1.21983 1.03418 1.00934 0.91278 1.21756 1.03109 0.91702 0.99880 1.21342 0.99560 0.92664 0.83518 0.91056 1.45896 1.29246 1.30833 1.30315 1.17929 0.82959 0.80449 0.82899 1.90805 1.26193 1.66584 1.61487 1.21107 0.99793 1.00583 0.99759 1.21515 0.98312 0.91548 0.92610 1.21937 0.97120 1.02860 0.97778 1.19183 0.90614 0.90625 0.91358 1.22850 1.02197 1.03597 1.01160 1.20581 0.95977 1.00717 0.94245 1.20200 1.01315 0.94810 0.98547 1.25233 1.00670 1.03701 1.02808 1.24539 0.95084 0.97178 0.98119 1.86622 1.36798 1.65509 1.45793 0.94554 0.82767 0.81514 0.79693 1.84048 1.26420 1.26647 1.20379 1.67781 1.32509 1.07890 1.12222 1.23437 0.91295 0.97065 0.88827 1.21842 1.02361 0.99185 0.93829 1.21934 1.03150 0.93513 0.99071 0.89067 0.86382 0.90850 0.88641 0.74751 0.82968 0.83094 0.82667 0.82832 0.84203 0.76185 1.18543 1.20129 0.78404 0.89619 0.93978 0.87590 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.89 4.15 -168.68 -0.70 47.19 16 2 H 0.44 -34.85 8.90 -89.70 -0.80 -35.65 16 3 H 0.45 -36.80 8.96 -89.69 -0.80 -37.60 16 4 H 0.45 -36.24 8.96 -89.69 -0.80 -37.04 16 5 C 0.05 -3.47 3.03 44.92 0.14 -3.34 16 6 H 0.16 -10.55 8.14 -2.39 -0.02 -10.57 16 7 C -0.14 7.91 5.43 30.60 0.17 8.08 16 8 C -0.13 5.81 5.39 30.59 0.16 5.97 16 9 C 0.13 -4.95 2.45 44.99 0.11 -4.84 16 10 H 0.07 -2.27 7.58 -2.39 -0.02 -2.29 16 11 N -0.71 21.68 5.03 -445.69 -2.24 19.44 16 12 C 0.57 -11.37 7.73 86.70 0.67 -10.70 16 13 O -0.57 6.87 16.07 -3.99 -0.06 6.80 16 14 C -0.21 3.73 5.89 -19.95 -0.12 3.61 16 15 C -0.01 0.21 9.65 22.46 0.22 0.43 16 16 C -0.18 2.46 9.56 22.34 0.21 2.67 16 17 C 0.22 -2.54 6.74 41.75 0.28 -2.26 16 18 C -0.18 1.97 6.37 23.95 0.15 2.12 16 19 C -0.08 0.92 9.83 21.41 0.21 1.13 16 20 C -0.12 1.35 10.00 21.14 0.21 1.57 16 21 C -0.21 2.45 5.73 24.68 0.14 2.59 16 22 C -0.04 0.45 2.96 71.23 0.21 0.66 16 23 O -0.54 4.88 12.86 -148.98 -1.92 2.96 16 24 Si 0.71 -8.62 30.96 68.60 2.12 -6.50 16 25 S 0.16 -2.04 19.42 -56.49 -1.10 -3.14 16 26 N -0.49 6.62 9.93 -184.09 -1.83 4.79 16 27 C 0.15 -3.08 10.71 85.11 0.91 -2.17 16 28 C -0.13 5.38 5.49 30.58 0.17 5.55 16 29 C -0.14 7.45 5.43 30.58 0.17 7.62 16 30 H 0.09 -5.13 8.14 -2.39 -0.02 -5.15 16 31 H 0.12 -7.16 8.14 -2.39 -0.02 -7.17 16 32 H 0.07 -3.02 8.14 -2.39 -0.02 -3.04 16 33 H 0.10 -4.59 8.14 -2.39 -0.02 -4.61 16 34 H 0.41 -14.73 6.65 -92.71 -0.62 -15.35 16 35 H 0.15 -2.38 7.72 -2.91 -0.02 -2.40 16 36 H 0.15 -2.48 7.24 -2.91 -0.02 -2.50 16 37 H 0.16 -1.95 7.97 -2.91 -0.02 -1.97 16 38 H 0.15 -1.97 8.06 -2.91 -0.02 -1.99 16 39 H 0.14 -1.99 7.96 -2.39 -0.02 -2.01 16 40 H 0.39 -5.66 8.70 -74.06 -0.64 -6.30 16 41 H -0.26 2.30 7.11 99.48 0.71 3.01 16 42 H -0.28 1.33 7.11 99.48 0.71 2.04 16 43 H 0.20 -5.87 6.41 -2.91 -0.02 -5.89 16 44 H 0.09 -3.60 8.14 -2.39 -0.02 -3.62 16 45 H 0.04 -1.25 8.14 -2.38 -0.02 -1.27 16 46 H 0.11 -5.90 8.14 -2.39 -0.02 -5.92 16 47 H 0.09 -4.60 8.14 -2.39 -0.02 -4.62 16 Total: 1.00 -97.38 393.41 -4.28 -101.66 By element: Atomic # 1 Polarization: -189.35 SS G_CDS: -2.57 Total: -191.92 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 4.01 Total: 18.70 kcal Atomic # 7 Polarization: 76.20 SS G_CDS: -4.77 Total: 71.43 kcal Atomic # 8 Polarization: 11.75 SS G_CDS: -1.98 Total: 9.77 kcal Atomic # 14 Polarization: -8.62 SS G_CDS: 2.12 Total: -6.50 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -1.10 Total: -3.14 kcal Total: -97.38 -4.28 -101.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_17119696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.356 kcal (2) G-P(sol) polarization free energy of solvation -97.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds