Wall clock time and date at job start Mon Mar 8 2021 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00904 * 1 3 3 H 1.00899 * 109.47611 * 1 2 4 4 H 1.00899 * 109.46899 * 239.99248 * 1 2 3 5 5 C 1.46901 * 109.46955 * 119.99857 * 1 2 3 6 6 H 1.08998 * 112.85264 * 288.80694 * 5 1 2 7 7 C 1.53783 * 113.61241 * 59.99858 * 5 1 2 8 8 C 1.53774 * 87.08230 * 89.11580 * 7 5 1 9 9 H 1.08999 * 113.61699 * 270.80125 * 8 7 5 10 10 C 1.50709 * 113.61560 * 139.98023 * 8 7 5 11 11 C 1.37990 * 119.93950 * 121.80735 * 10 8 7 12 12 C 1.39354 * 119.87746 * 180.29684 * 11 10 8 13 13 C 1.48418 * 120.11961 * 179.72565 * 12 11 10 14 14 C 1.35799 * 127.11082 * 129.72616 * 13 12 11 15 15 C 1.50696 * 125.76720 * 359.96496 * 14 13 12 16 16 O 1.42903 * 109.47131 * 329.71287 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 209.71828 * 15 14 13 18 18 O 1.34086 * 108.46569 * 179.69929 * 14 13 12 19 19 C 1.34166 * 110.74268 * 0.26313 * 18 14 13 20 20 C 1.34371 * 108.99104 * 359.97438 * 19 18 14 21 21 C 1.39309 * 119.76010 * 359.44884 * 12 11 10 22 22 C 1.38042 * 119.87794 * 0.25555 * 21 12 11 23 23 C 1.38309 * 120.11972 * 0.02562 * 22 21 12 24 24 C 1.53782 * 87.17345 * 25.39115 * 8 7 5 25 25 H 1.09002 * 113.61663 * 334.56937 * 7 5 1 26 26 H 1.09006 * 113.69114 * 203.67491 * 7 5 1 27 27 H 1.08001 * 120.06290 * 359.97438 * 11 10 8 28 28 H 1.08999 * 109.47358 * 89.71647 * 15 14 13 29 29 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 30 30 H 1.48499 * 109.99670 * 58.67633 * 17 15 14 31 31 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 32 32 H 1.07999 * 125.50236 * 180.02562 * 19 18 14 33 33 H 1.07998 * 126.99158 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.06377 * 180.22740 * 21 12 11 35 35 H 1.07998 * 119.94194 * 180.02562 * 22 21 12 36 36 H 1.07999 * 119.87960 * 179.97438 * 23 22 21 37 37 H 1.09003 * 113.61497 * 89.15576 * 24 8 7 38 38 H 1.09001 * 113.61332 * 220.06378 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4758 0.8238 5 6 -0.4896 -0.6925 -1.1995 6 1 -0.3254 -0.1226 -2.1140 7 6 -0.0307 -2.1571 -1.2957 8 6 -1.2961 -2.5235 -0.5026 9 1 -1.1530 -2.5117 0.5779 10 6 -1.9712 -3.7798 -0.9897 11 6 -2.1601 -4.8394 -0.1261 12 6 -2.7790 -6.0027 -0.5796 13 6 -2.9793 -7.1479 0.3431 14 6 -4.1326 -7.8301 0.5638 15 6 -5.4593 -7.5539 -0.0951 16 8 -5.5580 -6.1617 -0.4022 17 14 -6.8390 -8.0339 1.0612 18 8 -3.8898 -8.7948 1.4629 19 6 -2.6060 -8.7699 1.8517 20 6 -1.9729 -7.7758 1.2064 21 6 -3.2141 -6.0847 -1.9004 22 6 -3.0255 -5.0164 -2.7541 23 6 -2.4055 -3.8664 -2.3004 24 6 -1.9239 -1.2330 -1.0550 25 1 0.8956 -2.3606 -0.7584 26 1 -0.0245 -2.5482 -2.3131 27 1 -1.8242 -4.7692 0.8979 28 1 -5.5367 -8.1350 -1.0140 29 1 -5.4971 -5.5832 0.3702 30 1 -6.7261 -7.2714 2.3305 31 1 -8.1529 -7.7657 0.4233 32 1 -2.1541 -9.4411 2.5670 33 1 -0.9337 -7.4975 1.3015 34 1 -3.6976 -6.9826 -2.2560 35 1 -3.3628 -5.0787 -3.7782 36 1 -2.2596 -3.0331 -2.9717 37 1 -2.4369 -1.3697 -2.0069 38 1 -2.5239 -0.6915 -0.3235 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:24:28 Heat of formation + Delta-G solvation = 127.869550 kcal Electronic energy + Delta-G solvation = -20929.452015 eV Core-core repulsion = 17823.771642 eV Total energy + Delta-G solvation = -3105.680373 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.48391 -41.90542 -39.80890 -38.20452 -35.98307 -34.27964 -32.00832 -31.82208 -30.63439 -26.97549 -26.71310 -26.17936 -24.17532 -22.91549 -22.25859 -21.24015 -20.17779 -19.28423 -18.56313 -18.52296 -17.86772 -17.37023 -17.30953 -16.90601 -16.41930 -16.11901 -15.80403 -15.71419 -14.97834 -14.64784 -14.48055 -14.18535 -14.05940 -13.90230 -13.56745 -13.49437 -13.06529 -12.87557 -12.81948 -12.34959 -12.24039 -11.86507 -11.68398 -11.43180 -11.15089 -10.73206 -9.82850 -9.61251 -9.15988 -4.99152 0.10475 0.44103 0.73356 1.17724 1.47431 1.55030 1.57374 1.73671 1.93018 2.71035 2.89635 3.08331 3.09626 3.48341 3.61547 3.64786 3.78687 3.81302 3.98024 4.06266 4.13799 4.18181 4.23202 4.30178 4.42625 4.46587 4.56069 4.57427 4.62538 4.69121 4.74002 4.82157 4.92009 5.00496 5.01814 5.09719 5.12752 5.24064 5.39299 5.57355 5.62547 5.66913 6.02681 6.07048 6.28764 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.005097 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.881917 B = 5492.420716 C = 5837.743746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 H 0.452 0.548 3 H 0.454 0.546 4 H 0.440 0.560 5 C 0.032 3.968 6 H 0.168 0.832 7 C -0.141 4.141 8 C -0.092 4.092 9 H 0.130 0.870 10 C -0.077 4.077 11 C -0.111 4.111 12 C -0.020 4.020 13 C -0.143 4.143 14 C -0.048 4.048 15 C -0.030 4.030 16 O -0.517 6.517 17 Si 0.767 3.233 18 O -0.182 6.182 19 C -0.024 4.024 20 C -0.220 4.220 21 C -0.103 4.103 22 C -0.134 4.134 23 C -0.117 4.117 24 C -0.144 4.144 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.383 0.617 30 H -0.290 1.290 31 H -0.287 1.287 32 H 0.237 0.763 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.419 24.930 2.226 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.010 5.010 2 H 0.284 0.716 3 H 0.286 0.714 4 H 0.270 0.730 5 C -0.075 4.075 6 H 0.186 0.814 7 C -0.178 4.178 8 C -0.110 4.110 9 H 0.148 0.852 10 C -0.077 4.077 11 C -0.129 4.129 12 C -0.020 4.020 13 C -0.144 4.144 14 C -0.098 4.098 15 C -0.140 4.140 16 O -0.324 6.324 17 Si 0.671 3.329 18 O -0.079 6.079 19 C -0.090 4.090 20 C -0.239 4.239 21 C -0.121 4.121 22 C -0.152 4.152 23 C -0.135 4.135 24 C -0.181 4.181 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.232 0.768 30 H -0.217 1.217 31 H -0.214 1.214 32 H 0.253 0.747 33 H 0.185 0.815 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.120 0.880 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.370 24.661 1.941 29.123 hybrid contribution 0.200 0.329 0.147 0.412 sum 15.569 24.990 2.088 29.517 Atomic orbital electron populations 1.41973 1.22090 1.20879 1.16026 0.71585 0.71416 0.72951 1.23717 0.96959 0.96242 0.90555 0.81428 1.23542 0.98388 0.92466 1.03428 1.22059 0.96206 0.90857 1.01848 0.85200 1.19729 0.99088 0.96054 0.92848 1.21220 0.99250 0.92247 1.00212 1.18050 0.99504 0.92557 0.91868 1.20247 0.92597 0.99944 1.01634 1.23085 0.98257 0.92520 0.95943 1.24230 0.96711 0.86089 1.06923 1.86681 1.94409 1.14368 1.36904 0.93416 0.74073 0.91063 0.74352 1.83778 1.29852 1.46508 1.47787 1.24707 0.80589 1.01602 1.02078 1.23110 1.00981 0.99291 1.00510 1.21096 0.98859 0.98870 0.93291 1.21269 0.99868 0.94177 0.99890 1.21256 0.98320 0.97700 0.96195 1.23635 0.95000 0.94684 1.04826 0.87276 0.88334 0.85077 0.84418 0.76753 1.21677 1.21362 0.74719 0.81515 0.88267 0.86097 0.83582 0.88008 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 46.26 4.51 -166.25 -0.75 45.51 16 2 H 0.45 -36.07 9.02 -89.69 -0.81 -36.88 16 3 H 0.45 -36.40 9.02 -89.69 -0.81 -37.20 16 4 H 0.44 -34.20 8.00 -89.69 -0.72 -34.92 16 5 C 0.03 -2.02 4.97 45.50 0.23 -1.79 16 6 H 0.17 -10.94 8.14 -2.39 -0.02 -10.96 16 7 C -0.14 7.50 7.34 31.12 0.23 7.72 16 8 C -0.09 4.39 3.62 -11.01 -0.04 4.35 16 9 H 0.13 -6.89 7.64 -2.39 -0.02 -6.91 16 10 C -0.08 2.53 5.29 -19.90 -0.11 2.42 16 11 C -0.11 2.87 9.42 22.48 0.21 3.09 16 12 C -0.02 0.36 4.73 -20.04 -0.09 0.26 16 13 C -0.14 2.19 5.72 -18.91 -0.11 2.08 16 14 C -0.05 0.69 6.22 25.12 0.16 0.84 16 15 C -0.03 0.47 2.56 71.23 0.18 0.66 16 16 O -0.52 8.15 10.03 -148.98 -1.49 6.66 16 17 Si 0.77 -11.45 32.37 68.60 2.22 -9.23 16 18 O -0.18 2.55 9.36 0.91 0.01 2.56 16 19 C -0.02 0.43 12.05 66.94 0.81 1.23 16 20 C -0.22 3.89 11.13 23.60 0.26 4.15 16 21 C -0.10 1.66 7.92 22.48 0.18 1.84 16 22 C -0.13 2.73 10.03 22.24 0.22 2.95 16 23 C -0.12 3.35 8.53 22.31 0.19 3.54 16 24 C -0.14 7.69 7.13 31.18 0.22 7.91 16 25 H 0.11 -6.11 8.14 -2.39 -0.02 -6.12 16 26 H 0.10 -4.59 7.64 -2.38 -0.02 -4.61 16 27 H 0.13 -3.79 8.05 -2.91 -0.02 -3.81 16 28 H 0.14 -2.40 7.96 -2.39 -0.02 -2.42 16 29 H 0.38 -7.79 8.70 -74.06 -0.64 -8.43 16 30 H -0.29 2.84 7.11 99.48 0.71 3.55 16 31 H -0.29 2.42 7.11 99.48 0.71 3.13 16 32 H 0.24 -5.92 8.06 -2.91 -0.02 -5.94 16 33 H 0.17 -3.65 8.06 -2.91 -0.02 -3.68 16 34 H 0.10 -1.30 7.88 -2.91 -0.02 -1.32 16 35 H 0.12 -2.51 8.06 -2.91 -0.02 -2.53 16 36 H 0.15 -5.10 6.71 -2.91 -0.02 -5.12 16 37 H 0.10 -4.81 6.39 -2.39 -0.02 -4.83 16 38 H 0.11 -6.08 8.14 -2.39 -0.02 -6.10 16 Total: 1.00 -89.04 312.76 0.69 -88.34 By element: Atomic # 1 Polarization: -173.27 SS G_CDS: -1.83 Total: -175.10 kcal Atomic # 6 Polarization: 38.72 SS G_CDS: 2.54 Total: 41.26 kcal Atomic # 7 Polarization: 46.26 SS G_CDS: -0.75 Total: 45.51 kcal Atomic # 8 Polarization: 10.70 SS G_CDS: -1.49 Total: 9.22 kcal Atomic # 14 Polarization: -11.45 SS G_CDS: 2.22 Total: -9.23 kcal Total: -89.04 0.69 -88.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.214 kcal (2) G-P(sol) polarization free energy of solvation -89.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds