Wall clock time and date at job start Mon Mar 8 2021 07:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00894 * 1 3 3 H 1.00904 * 109.47241 * 1 2 4 4 H 1.00898 * 109.46936 * 240.01284 * 1 2 3 5 5 C 1.46896 * 109.47751 * 120.00875 * 1 2 3 6 6 H 1.09008 * 109.46714 * 299.99826 * 5 1 2 7 7 C 1.53002 * 109.47361 * 59.99715 * 5 1 2 8 8 C 1.53000 * 109.47108 * 180.02562 * 7 5 1 9 9 C 1.53001 * 109.46989 * 299.99527 * 8 7 5 10 10 H 1.08998 * 109.47258 * 300.01076 * 9 8 7 11 11 N 1.46497 * 109.47149 * 179.97438 * 9 8 7 12 12 C 1.38999 * 119.99613 * 155.00335 * 11 9 8 13 13 C 1.39275 * 120.02895 * 359.72185 * 12 11 9 14 14 N 1.32049 * 120.13620 * 179.77603 * 13 12 11 15 15 C 1.32048 * 120.19048 * 0.48349 * 14 13 12 16 16 C 1.39403 * 120.04763 * 359.77864 * 15 14 13 17 17 C 1.48262 * 120.06515 * 179.97438 * 16 15 14 18 18 C 1.35902 * 127.12929 * 133.12130 * 17 16 15 19 19 C 1.50696 * 125.76878 * 359.97294 * 18 17 16 20 20 O 1.42901 * 109.47433 * 322.77673 * 19 18 17 21 21 Si 1.86303 * 109.46820 * 202.77455 * 19 18 17 22 22 O 1.33998 * 108.45463 * 179.97438 * 18 17 16 23 23 C 1.34169 * 110.77491 * 359.97438 * 22 18 17 24 24 C 1.34338 * 109.01306 * 359.70912 * 23 22 18 25 25 N 1.32617 * 120.02345 * 180.02562 * 12 11 9 26 26 C 1.53002 * 109.46810 * 60.00290 * 9 8 7 27 27 C 1.52996 * 109.47360 * 180.02562 * 5 1 2 28 28 H 1.08995 * 109.46905 * 60.00184 * 7 5 1 29 29 H 1.09002 * 109.46716 * 300.00310 * 7 5 1 30 30 H 1.08995 * 109.47521 * 60.00031 * 8 7 5 31 31 H 1.08999 * 109.46912 * 180.02562 * 8 7 5 32 32 H 0.96997 * 119.99911 * 335.00599 * 11 9 8 33 33 H 1.08003 * 119.93741 * 0.03070 * 13 12 11 34 34 H 1.08003 * 119.97818 * 179.75046 * 15 14 13 35 35 H 1.09004 * 109.47213 * 82.77974 * 19 18 17 36 36 H 0.96698 * 114.00060 * 299.99557 * 20 19 18 37 37 H 1.48501 * 110.00028 * 180.02562 * 21 19 18 38 38 H 1.48493 * 110.00395 * 301.31966 * 21 19 18 39 39 H 1.08010 * 125.49671 * 179.97438 * 23 22 18 40 40 H 1.08003 * 126.99919 * 180.26990 * 24 23 22 41 41 H 1.09001 * 109.47276 * 60.00172 * 26 9 8 42 42 H 1.09006 * 109.47128 * 179.97438 * 26 9 8 43 43 H 1.09000 * 109.47372 * 59.99765 * 27 5 1 44 44 H 1.09002 * 109.47319 * 299.99805 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -0.1265 -0.1789 -2.0894 7 6 0.0202 -2.1352 -1.1992 8 6 -0.4895 -2.8563 -2.4486 9 6 -2.0195 -2.8564 -2.4489 10 1 -2.3831 -3.3701 -1.5590 11 7 -2.5076 -3.5463 -3.6456 12 6 -3.7679 -4.1326 -3.6442 13 6 -4.5647 -4.0695 -2.5038 14 7 -5.7641 -4.6219 -2.5016 15 6 -6.2101 -5.2450 -3.5770 16 6 -5.4169 -5.3176 -4.7210 17 6 -5.9171 -6.0176 -5.9285 18 6 -5.8775 -5.5706 -7.2113 19 6 -5.3080 -4.2520 -7.6674 20 8 -5.6040 -3.2445 -6.6983 21 14 -6.0649 -3.7815 -9.3035 22 8 -6.4305 -6.5005 -8.0018 23 6 -6.8376 -7.5566 -7.2813 24 6 -6.5503 -7.3403 -5.9870 25 7 -4.2100 -4.7578 -4.7270 26 6 -2.5295 -1.4138 -2.4490 27 6 -2.0198 -0.6920 -1.1995 28 1 -0.3431 -2.6488 -0.3091 29 1 1.1102 -2.1351 -1.1993 30 1 -0.1259 -2.3426 -3.3384 31 1 -0.1266 -3.8841 -2.4483 32 1 -1.9512 -3.5941 -4.4387 33 1 -4.2027 -3.5641 -1.6206 34 1 -7.1900 -5.6991 -3.5702 35 1 -4.2275 -4.3421 -7.7795 36 1 -6.5496 -3.1098 -6.5471 37 1 -5.5111 -2.4831 -9.7646 38 1 -5.7913 -4.8366 -10.3119 39 1 -7.3152 -8.4402 -7.6785 40 1 -6.7481 -8.0034 -5.1577 41 1 -2.1660 -0.9000 -3.3389 42 1 -3.6195 -1.4138 -2.4497 43 1 -2.3827 0.3358 -1.1998 44 1 -2.3835 -1.2055 -0.3094 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17085452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:35:12 Heat of formation + Delta-G solvation = 121.989703 kcal Electronic energy + Delta-G solvation = -27050.603620 eV Core-core repulsion = 23281.777688 eV Total energy + Delta-G solvation = -3768.825932 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.58391 -41.99099 -41.01021 -38.29663 -38.04664 -35.61399 -35.26859 -33.46171 -32.04287 -31.70678 -30.76745 -28.80195 -27.12151 -25.50714 -24.77283 -24.00311 -23.23202 -22.32042 -21.53687 -21.07169 -19.19076 -19.06646 -18.48165 -18.29502 -17.94289 -17.67667 -17.47570 -17.35656 -17.30285 -16.37839 -16.23372 -16.05666 -15.66397 -15.27741 -15.15747 -14.62003 -14.33863 -14.19416 -14.08443 -13.81760 -13.77755 -13.51933 -13.38441 -12.88675 -12.78484 -12.60817 -12.48661 -12.36679 -12.27903 -12.24643 -11.85060 -11.50404 -11.30304 -10.77380 -10.49865 -10.10883 -9.52805 -8.83398 -5.07702 -0.30050 0.31752 0.65572 1.15699 1.39075 1.49689 1.57394 1.84146 1.87283 2.00118 2.80708 3.11097 3.12032 3.21870 3.25535 3.42981 3.51314 3.63598 3.64791 3.67875 3.86602 3.87481 3.93442 4.11915 4.13205 4.19840 4.25411 4.29995 4.36147 4.36888 4.49822 4.56504 4.62052 4.62589 4.69982 4.70910 4.84859 4.99911 5.00408 5.05801 5.09259 5.16844 5.27192 5.31854 5.37872 5.80665 6.00074 6.32287 6.47322 6.55771 6.98684 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.003452 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.957715 B = 8110.119390 C = 8838.673960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.450 0.550 3 H 0.450 0.550 4 H 0.444 0.556 5 C 0.050 3.950 6 H 0.149 0.851 7 C -0.134 4.134 8 C -0.126 4.126 9 C 0.142 3.858 10 H 0.091 0.909 11 N -0.710 5.710 12 C 0.359 3.641 13 C -0.017 4.017 14 N -0.421 5.421 15 C -0.018 4.018 16 C 0.212 3.788 17 C -0.141 4.141 18 C -0.017 4.017 19 C -0.015 4.015 20 O -0.529 6.529 21 Si 0.780 3.220 22 O -0.185 6.185 23 C -0.017 4.017 24 C -0.209 4.209 25 N -0.507 5.507 26 C -0.137 4.137 27 C -0.137 4.137 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.405 0.595 33 H 0.190 0.810 34 H 0.170 0.830 35 H 0.123 0.877 36 H 0.390 0.610 37 H -0.280 1.280 38 H -0.293 1.293 39 H 0.242 0.758 40 H 0.170 0.830 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.027 19.091 22.586 35.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.282 0.718 3 H 0.281 0.719 4 H 0.274 0.726 5 C -0.056 4.056 6 H 0.167 0.833 7 C -0.172 4.172 8 C -0.165 4.165 9 C 0.038 3.962 10 H 0.109 0.891 11 N -0.342 5.342 12 C 0.118 3.882 13 C -0.186 4.186 14 N -0.134 5.134 15 C -0.178 4.178 16 C 0.072 3.928 17 C -0.144 4.144 18 C -0.068 4.068 19 C -0.125 4.125 20 O -0.335 6.335 21 Si 0.684 3.316 22 O -0.082 6.082 23 C -0.083 4.083 24 C -0.228 4.228 25 N -0.230 5.230 26 C -0.177 4.177 27 C -0.175 4.175 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.207 0.793 34 H 0.188 0.812 35 H 0.140 0.860 36 H 0.240 0.760 37 H -0.206 1.206 38 H -0.220 1.220 39 H 0.258 0.742 40 H 0.188 0.812 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.744 19.318 21.454 34.975 hybrid contribution 0.383 -0.948 -0.179 1.038 sum 20.127 18.370 21.275 34.571 Atomic orbital electron populations 1.42232 1.22082 1.20927 1.16716 0.71829 0.71875 0.72564 1.22855 0.96615 0.96013 0.90093 0.83311 1.21954 1.03694 0.92556 0.99038 1.21702 0.91979 1.02461 1.00344 1.21467 0.95406 0.92510 0.86859 0.89138 1.44697 1.13146 1.58462 1.17897 1.19502 0.88579 0.90066 0.90017 1.23479 0.91393 1.04671 0.99020 1.68204 1.13377 1.04626 1.27183 1.23393 1.02272 1.02780 0.89390 1.19442 0.89019 0.92065 0.92266 1.19618 1.07058 0.96329 0.91389 1.23224 1.00887 0.93768 0.88937 1.24329 1.02943 0.81908 1.03310 1.86532 1.31170 1.53810 1.62000 0.93392 0.89125 0.77115 0.71946 1.83807 1.60407 1.25222 1.38751 1.24688 1.01680 0.91593 0.90301 1.23070 1.05002 0.96103 0.98633 1.67895 1.15079 1.12531 1.27506 1.21972 1.01303 0.94676 0.99722 1.21982 0.92338 1.04013 0.99211 0.88000 0.87063 0.90176 0.91445 0.75961 0.79345 0.81240 0.86010 0.76039 1.20628 1.21994 0.74243 0.81230 0.91029 0.92613 0.87607 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.25 4.15 -168.68 -0.70 47.55 16 2 H 0.45 -36.67 8.96 -89.70 -0.80 -37.47 16 3 H 0.45 -36.48 8.96 -89.69 -0.80 -37.28 16 4 H 0.44 -35.72 8.90 -89.70 -0.80 -36.51 16 5 C 0.05 -3.29 3.02 44.92 0.14 -3.15 16 6 H 0.15 -9.74 8.14 -2.38 -0.02 -9.76 16 7 C -0.13 7.74 5.43 30.59 0.17 7.90 16 8 C -0.13 5.63 5.39 30.59 0.16 5.79 16 9 C 0.14 -5.50 2.15 44.99 0.10 -5.40 16 10 H 0.09 -3.56 6.45 -2.39 -0.02 -3.57 16 11 N -0.71 19.14 5.24 -324.26 -1.70 17.44 16 12 C 0.36 -6.42 7.64 133.03 1.02 -5.40 16 13 C -0.02 0.32 10.02 84.91 0.85 1.17 16 14 N -0.42 5.17 10.48 -193.79 -2.03 3.14 16 15 C -0.02 0.21 10.92 84.94 0.93 1.14 16 16 C 0.21 -2.21 5.51 41.91 0.23 -1.98 16 17 C -0.14 1.45 5.91 -18.92 -0.11 1.34 16 18 C -0.02 0.18 6.29 25.14 0.16 0.34 16 19 C -0.01 0.19 2.77 71.23 0.20 0.39 16 20 O -0.53 7.66 10.95 -148.98 -1.63 6.03 16 21 Si 0.78 -10.76 32.26 68.60 2.21 -8.55 16 22 O -0.18 1.94 9.19 1.72 0.02 1.96 16 23 C -0.02 0.25 12.04 66.93 0.81 1.05 16 24 C -0.21 2.73 11.11 23.61 0.26 3.00 16 25 N -0.51 5.73 9.58 -181.72 -1.74 3.99 16 26 C -0.14 5.82 5.43 30.61 0.17 5.98 16 27 C -0.14 7.74 5.43 30.61 0.17 7.91 16 28 H 0.10 -5.97 8.14 -2.39 -0.02 -5.99 16 29 H 0.11 -6.63 8.14 -2.39 -0.02 -6.65 16 30 H 0.08 -3.49 8.14 -2.39 -0.02 -3.51 16 31 H 0.07 -2.60 8.14 -2.39 -0.02 -2.62 16 32 H 0.40 -10.37 8.73 -92.71 -0.81 -11.18 16 33 H 0.19 -5.16 6.10 -2.91 -0.02 -5.18 16 34 H 0.17 -2.36 8.06 -2.91 -0.02 -2.38 16 35 H 0.12 -1.46 7.96 -2.39 -0.02 -1.48 16 36 H 0.39 -7.99 8.70 -74.06 -0.64 -8.64 16 37 H -0.28 2.44 7.11 99.48 0.71 3.15 16 38 H -0.29 1.87 7.11 99.48 0.71 2.58 16 39 H 0.24 -5.31 8.06 -2.91 -0.02 -5.33 16 40 H 0.17 -2.80 8.06 -2.91 -0.02 -2.82 16 41 H 0.07 -2.86 8.14 -2.39 -0.02 -2.88 16 42 H 0.06 -1.93 7.72 -2.38 -0.02 -1.95 16 43 H 0.11 -6.10 8.14 -2.39 -0.02 -6.12 16 44 H 0.10 -5.93 8.14 -2.39 -0.02 -5.95 16 Total: 1.00 -96.85 356.93 -3.08 -99.93 By element: Atomic # 1 Polarization: -188.83 SS G_CDS: -2.74 Total: -191.57 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 5.23 Total: 20.08 kcal Atomic # 7 Polarization: 78.29 SS G_CDS: -6.17 Total: 72.12 kcal Atomic # 8 Polarization: 9.60 SS G_CDS: -1.62 Total: 7.99 kcal Atomic # 14 Polarization: -10.76 SS G_CDS: 2.21 Total: -8.55 kcal Total: -96.85 -3.08 -99.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17085452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.922 kcal (2) G-P(sol) polarization free energy of solvation -96.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds