Wall clock time and date at job start Mon Mar 8 2021 07:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00902 * 1 3 3 H 1.00895 * 109.47591 * 1 2 4 4 H 1.00896 * 109.46628 * 239.99333 * 1 2 3 5 5 C 1.46903 * 109.46968 * 120.00280 * 1 2 3 6 6 H 1.08994 * 109.46876 * 179.97438 * 5 1 2 7 7 C 1.52999 * 109.46741 * 299.99736 * 5 1 2 8 8 C 1.53004 * 109.46854 * 180.02562 * 7 5 1 9 9 C 1.52993 * 109.47271 * 299.99776 * 8 7 5 10 10 H 1.09004 * 109.47574 * 300.00261 * 9 8 7 11 11 N 1.46502 * 109.47254 * 180.02562 * 9 8 7 12 12 C 1.38409 * 120.00140 * 85.00150 * 11 9 8 13 13 N 1.32350 * 119.15743 * 179.97438 * 12 11 9 14 14 C 1.33184 * 120.59854 * 179.97438 * 13 12 11 15 15 C 1.48149 * 120.51645 * 180.02562 * 14 13 12 16 16 C 1.35983 * 127.13791 * 312.81980 * 15 14 13 17 17 C 1.50699 * 125.77160 * 0.03454 * 16 15 14 18 18 O 1.42897 * 109.47396 * 322.80679 * 17 16 15 19 19 Si 1.86299 * 109.46892 * 202.80813 * 17 16 15 20 20 O 1.33932 * 108.44981 * 179.89423 * 16 15 14 21 21 C 1.34184 * 110.79579 * 0.38990 * 20 16 15 22 22 C 1.34310 * 109.02576 * 359.76090 * 21 20 16 23 23 C 1.39827 * 118.96700 * 359.97438 * 14 13 12 24 24 C 1.38255 * 118.45172 * 359.97438 * 23 14 13 25 25 N 1.32409 * 119.29965 * 359.75140 * 24 23 14 26 26 C 1.53005 * 109.47308 * 59.99926 * 9 8 7 27 27 C 1.53003 * 109.47014 * 59.99422 * 5 1 2 28 28 H 1.08996 * 109.47335 * 299.99561 * 7 5 1 29 29 H 1.08994 * 109.47522 * 60.00290 * 7 5 1 30 30 H 1.08998 * 109.47235 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47208 * 59.99610 * 8 7 5 32 32 H 0.97000 * 119.99735 * 265.00059 * 11 9 8 33 33 H 1.09000 * 109.47315 * 82.80830 * 17 16 15 34 34 H 0.96699 * 114.00461 * 300.00221 * 18 17 16 35 35 H 1.48496 * 110.00372 * 58.68269 * 19 17 16 36 36 H 1.48500 * 109.99976 * 180.02562 * 19 17 16 37 37 H 1.07998 * 125.48205 * 179.73918 * 21 20 16 38 38 H 1.08000 * 126.99464 * 179.97438 * 22 21 20 39 39 H 1.08009 * 120.76844 * 179.97438 * 23 14 13 40 40 H 1.08001 * 120.34259 * 179.97438 * 24 23 14 41 41 H 1.09004 * 109.46530 * 59.99695 * 26 9 8 42 42 H 1.08998 * 109.47124 * 179.97438 * 26 9 8 43 43 H 1.09002 * 109.46936 * 60.00340 * 27 5 1 44 44 H 1.08994 * 109.47469 * 299.99845 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3362 -0.4757 0.8238 5 6 -0.4896 -0.6926 -1.1994 6 1 -1.5796 -0.6930 -1.1992 7 6 0.0204 0.0287 -2.4486 8 6 -0.4901 -0.6922 -3.6979 9 6 0.0194 -2.1348 -3.6983 10 1 1.1095 -2.1352 -3.6985 11 7 -0.4689 -2.8249 -4.8947 12 6 0.2265 -2.7193 -6.0868 13 7 -0.2294 -3.3501 -7.1573 14 6 0.4166 -3.2678 -8.3191 15 6 -0.0956 -3.9742 -9.5163 16 6 -0.5144 -5.2658 -9.5910 17 6 -0.5414 -6.2504 -8.4505 18 8 0.6012 -6.0455 -7.6171 19 14 -0.5129 -7.9858 -9.1276 20 8 -0.9018 -5.5137 -10.8488 21 6 -0.7455 -4.4259 -11.6187 22 6 -0.2503 -3.4270 -10.8698 23 6 1.5852 -2.5033 -8.3915 24 6 2.0238 -1.8608 -7.2486 25 7 1.3276 -1.9829 -6.1289 26 6 -0.4905 -2.8562 -2.4490 27 6 0.0205 -2.1350 -1.1994 28 1 -0.3430 1.0563 -2.4487 29 1 1.1103 0.0288 -2.4487 30 1 -0.1272 -0.1781 -4.5879 31 1 -1.5802 -0.6919 -3.6977 32 1 -1.2795 -3.3559 -4.8515 33 1 -1.4490 -6.1037 -7.8651 34 1 1.4463 -6.1601 -8.0730 35 1 0.7041 -8.1888 -9.9539 36 1 -0.5397 -8.9664 -8.0127 37 1 -0.9797 -4.3638 -12.6711 38 1 -0.0137 -2.4253 -11.1968 39 1 2.1323 -2.4169 -9.3187 40 1 2.9228 -1.2628 -7.2699 41 1 -1.5805 -2.8558 -2.4488 42 1 -0.1278 -3.8840 -2.4495 43 1 -0.3428 -2.6489 -0.3094 44 1 1.1105 -2.1350 -1.1995 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17085550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:36:31 Heat of formation + Delta-G solvation = 128.607611 kcal Electronic energy + Delta-G solvation = -27005.549366 eV Core-core repulsion = 23237.010407 eV Total energy + Delta-G solvation = -3768.538958 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.57905 -41.86460 -40.99641 -38.33288 -38.03245 -35.51188 -34.95109 -33.37139 -32.03146 -31.74976 -31.29047 -28.85843 -27.19127 -25.37413 -24.65996 -24.01666 -23.21875 -22.28972 -21.52705 -21.15225 -19.41381 -19.06018 -18.47366 -18.30822 -17.92978 -17.57092 -17.47191 -17.38291 -16.54858 -16.34316 -16.23832 -16.06135 -15.79524 -15.24920 -15.15818 -14.87859 -14.39903 -14.23213 -14.04504 -13.93175 -13.78401 -13.56417 -13.38061 -13.01298 -12.81331 -12.54993 -12.27671 -12.25142 -12.04778 -11.92287 -11.87167 -11.49834 -11.22952 -10.91229 -10.58708 -10.14206 -9.55006 -9.07176 -4.99403 -0.18556 0.26068 0.67858 1.14666 1.39244 1.52320 1.55531 1.71622 1.86205 1.94298 2.90103 3.04046 3.08535 3.10378 3.24207 3.45623 3.59041 3.61728 3.73261 3.76755 3.93398 3.95547 4.10501 4.12098 4.19509 4.23598 4.32149 4.35065 4.35520 4.49451 4.52908 4.62086 4.62955 4.63947 4.71418 4.78040 4.88335 4.97072 5.04937 5.05354 5.07835 5.17697 5.27125 5.33921 5.40572 5.86159 5.96850 6.12908 6.22687 6.42263 7.33792 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.003409 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.801065 B = 8210.838110 C = 9062.088274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 H 0.443 0.557 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.053 3.947 6 H 0.153 0.847 7 C -0.134 4.134 8 C -0.128 4.128 9 C 0.155 3.845 10 H 0.078 0.922 11 N -0.698 5.698 12 C 0.552 3.448 13 N -0.569 5.569 14 C 0.288 3.712 15 C -0.155 4.155 16 C -0.011 4.011 17 C -0.026 4.026 18 O -0.523 6.523 19 Si 0.779 3.221 20 O -0.175 6.175 21 C -0.015 4.015 22 C -0.210 4.210 23 C -0.284 4.284 24 C 0.187 3.813 25 N -0.576 5.576 26 C -0.127 4.127 27 C -0.133 4.133 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.412 0.588 33 H 0.141 0.859 34 H 0.380 0.620 35 H -0.293 1.293 36 H -0.283 1.283 37 H 0.245 0.755 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.196 0.804 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 16.861 28.734 33.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.018 5.018 2 H 0.273 0.727 3 H 0.282 0.718 4 H 0.283 0.717 5 C -0.053 4.053 6 H 0.171 0.829 7 C -0.172 4.172 8 C -0.168 4.168 9 C 0.051 3.949 10 H 0.097 0.903 11 N -0.335 5.335 12 C 0.195 3.805 13 N -0.292 5.292 14 C 0.141 3.859 15 C -0.158 4.158 16 C -0.063 4.063 17 C -0.135 4.135 18 O -0.329 6.329 19 Si 0.682 3.318 20 O -0.071 6.071 21 C -0.080 4.080 22 C -0.229 4.229 23 C -0.310 4.310 24 C 0.021 3.979 25 N -0.300 5.300 26 C -0.166 4.166 27 C -0.171 4.171 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.158 0.842 34 H 0.229 0.771 35 H -0.220 1.220 36 H -0.210 1.210 37 H 0.261 0.739 38 H 0.187 0.813 39 H 0.171 0.829 40 H 0.213 0.787 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.653 15.856 29.906 33.889 hybrid contribution 1.462 0.452 -1.229 1.963 sum -0.191 16.307 28.677 32.990 Atomic orbital electron populations 1.42219 1.22017 1.21041 1.16563 0.72652 0.71841 0.71735 1.22836 1.04689 0.93208 0.84602 0.82892 1.21920 1.03412 1.00438 0.91452 1.21832 1.01417 0.94793 0.98764 1.21211 0.99515 0.91528 0.82650 0.90348 1.44296 1.28619 1.55106 1.05442 1.19538 0.86908 0.87027 0.87076 1.67838 1.35837 1.26113 0.99370 1.18955 0.89213 0.89015 0.88735 1.19754 1.09175 0.93553 0.93273 1.23157 1.01548 0.96363 0.85211 1.24397 0.92741 1.06163 0.90235 1.86672 1.16109 1.92313 1.37808 0.93498 0.87582 0.71561 0.79187 1.83768 1.66443 1.38681 1.18244 1.24748 1.01864 0.83198 0.98231 1.23048 1.07101 1.02080 0.90711 1.22671 1.00273 1.05219 1.02805 1.23314 0.96754 0.91799 0.86055 1.67911 1.08805 1.23144 1.30150 1.21745 1.02509 0.99705 0.92634 1.21947 1.03528 0.92771 0.98884 0.87640 0.88759 0.93647 0.91149 0.75058 0.84204 0.77122 1.21962 1.20987 0.73897 0.81295 0.82938 0.78735 0.89775 0.91790 0.86695 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 46.85 4.15 -168.68 -0.70 46.15 16 2 H 0.44 -34.55 8.90 -89.69 -0.80 -35.35 16 3 H 0.45 -35.70 8.96 -89.70 -0.80 -36.50 16 4 H 0.45 -36.01 8.96 -89.70 -0.80 -36.81 16 5 C 0.05 -3.29 3.02 44.92 0.14 -3.16 16 6 H 0.15 -9.72 8.14 -2.39 -0.02 -9.74 16 7 C -0.13 6.99 5.43 30.60 0.17 7.16 16 8 C -0.13 4.79 5.51 30.59 0.17 4.96 16 9 C 0.16 -5.14 2.44 44.99 0.11 -5.03 16 10 H 0.08 -2.32 7.51 -2.39 -0.02 -2.34 16 11 N -0.70 15.69 5.22 -330.50 -1.73 13.96 16 12 C 0.55 -7.84 8.40 261.53 2.20 -5.64 16 13 N -0.57 5.60 9.58 -187.05 -1.79 3.81 16 14 C 0.29 -2.89 5.53 41.96 0.23 -2.66 16 15 C -0.16 1.56 5.94 -18.93 -0.11 1.45 16 16 C -0.01 0.11 6.29 25.16 0.16 0.27 16 17 C -0.03 0.34 2.80 71.24 0.20 0.54 16 18 O -0.52 5.76 10.97 -148.98 -1.63 4.12 16 19 Si 0.78 -10.41 32.27 68.60 2.21 -8.20 16 20 O -0.17 2.12 9.19 2.19 0.02 2.14 16 21 C -0.01 0.23 12.04 66.92 0.81 1.04 16 22 C -0.21 2.84 11.11 23.61 0.26 3.10 16 23 C -0.28 3.96 9.89 22.66 0.22 4.18 16 24 C 0.19 -3.12 11.29 84.61 0.95 -2.17 16 25 N -0.58 9.08 9.19 -198.24 -1.82 7.26 16 26 C -0.13 5.19 5.39 30.61 0.17 5.36 16 27 C -0.13 7.23 5.43 30.61 0.17 7.39 16 28 H 0.11 -5.73 8.14 -2.39 -0.02 -5.75 16 29 H 0.09 -4.91 8.14 -2.39 -0.02 -4.93 16 30 H 0.04 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H 0.07 -2.57 8.14 -2.38 -0.02 -2.59 16 32 H 0.41 -9.39 8.72 -92.71 -0.81 -10.20 16 33 H 0.14 -1.99 7.96 -2.39 -0.02 -2.01 16 34 H 0.38 -5.60 8.70 -74.06 -0.64 -6.24 16 35 H -0.29 2.16 7.11 99.48 0.71 2.86 16 36 H -0.28 2.21 7.11 99.48 0.71 2.92 16 37 H 0.25 -5.75 8.06 -2.91 -0.02 -5.77 16 38 H 0.17 -2.88 8.06 -2.91 -0.02 -2.90 16 39 H 0.15 -2.57 8.06 -2.91 -0.02 -2.60 16 40 H 0.20 -4.60 8.06 -2.91 -0.02 -4.63 16 41 H 0.08 -3.46 8.14 -2.39 -0.02 -3.48 16 42 H 0.06 -2.21 8.14 -2.39 -0.02 -2.23 16 43 H 0.11 -6.59 8.14 -2.39 -0.02 -6.61 16 44 H 0.10 -5.17 8.14 -2.39 -0.02 -5.19 16 Total: 1.00 -92.99 360.52 -2.36 -95.35 By element: Atomic # 1 Polarization: -178.62 SS G_CDS: -2.75 Total: -181.37 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.83 Total: 16.79 kcal Atomic # 7 Polarization: 77.21 SS G_CDS: -6.04 Total: 71.17 kcal Atomic # 8 Polarization: 7.87 SS G_CDS: -1.61 Total: 6.26 kcal Atomic # 14 Polarization: -10.41 SS G_CDS: 2.21 Total: -8.20 kcal Total: -92.99 -2.36 -95.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17085550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.961 kcal (2) G-P(sol) polarization free energy of solvation -92.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds