Wall clock time and date at job start Mon Mar 8 2021 07:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00902 * 109.47334 * 1 2 4 4 H 1.00897 * 109.47352 * 239.99147 * 1 2 3 5 5 C 1.46904 * 109.46894 * 119.99262 * 1 2 3 6 6 H 1.09003 * 109.46933 * 180.02562 * 5 1 2 7 7 C 1.52990 * 109.47694 * 300.00290 * 5 1 2 8 8 C 1.53004 * 109.47646 * 180.02562 * 7 5 1 9 9 C 1.53000 * 109.46621 * 299.99748 * 8 7 5 10 10 H 1.08998 * 109.47352 * 300.00377 * 9 8 7 11 11 N 1.46497 * 109.46965 * 179.97438 * 9 8 7 12 12 C 1.38009 * 119.99782 * 85.00276 * 11 9 8 13 13 N 1.33091 * 120.03516 * 359.97438 * 12 11 9 14 14 C 1.32169 * 120.12370 * 179.97438 * 13 12 11 15 15 N 1.32103 * 120.19866 * 0.02562 * 14 13 12 16 16 C 1.33270 * 120.07021 * 359.97438 * 15 14 13 17 17 C 1.48028 * 120.06536 * 179.97438 * 16 15 14 18 18 C 1.36069 * 127.15097 * 132.88288 * 17 16 15 19 19 C 1.50703 * 125.77372 * 0.03667 * 18 17 16 20 20 O 1.42897 * 109.47266 * 322.80708 * 19 18 17 21 21 Si 1.86301 * 109.46789 * 202.80342 * 19 18 17 22 22 O 1.33854 * 108.43979 * 179.89823 * 18 17 16 23 23 C 1.34183 * 110.82274 * 0.38625 * 22 18 17 24 24 C 1.34284 * 109.04803 * 359.76469 * 23 22 18 25 25 N 1.32856 * 120.03156 * 179.97438 * 12 11 9 26 26 C 1.53005 * 109.47085 * 60.00077 * 9 8 7 27 27 C 1.53000 * 109.46852 * 60.00724 * 5 1 2 28 28 H 1.09010 * 109.47012 * 300.00350 * 7 5 1 29 29 H 1.08999 * 109.47379 * 59.99544 * 7 5 1 30 30 H 1.08998 * 109.47183 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.46865 * 59.99858 * 8 7 5 32 32 H 0.97000 * 120.00486 * 264.99867 * 11 9 8 33 33 H 1.08007 * 119.89910 * 180.02562 * 14 13 12 34 34 H 1.08999 * 109.46671 * 82.81201 * 19 18 17 35 35 H 0.96707 * 113.99878 * 299.99605 * 20 19 18 36 36 H 1.48503 * 109.99867 * 58.68437 * 21 19 18 37 37 H 1.48493 * 110.00138 * 180.02562 * 21 19 18 38 38 H 1.08005 * 125.47590 * 179.74406 * 23 22 18 39 39 H 1.07997 * 127.00553 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47190 * 59.99686 * 26 9 8 41 41 H 1.08998 * 109.47043 * 179.97438 * 26 9 8 42 42 H 1.08998 * 109.47530 * 59.99781 * 27 5 1 43 43 H 1.09003 * 109.46875 * 299.99452 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4757 0.8237 5 6 -0.4896 -0.6924 -1.1996 6 1 -1.5797 -0.6920 -1.1998 7 6 0.0204 0.0289 -2.4487 8 6 -0.4901 -0.6919 -3.6981 9 6 0.0194 -2.1345 -3.6984 10 1 1.1094 -2.1349 -3.6985 11 7 -0.4698 -2.8249 -4.8944 12 6 0.2226 -2.7198 -6.0835 13 7 1.3346 -1.9911 -6.1447 14 6 1.9994 -1.8897 -7.2826 15 7 1.5637 -2.5102 -8.3643 16 6 0.4511 -3.2420 -8.3119 17 6 -0.0374 -3.9368 -9.5242 18 6 -0.4496 -5.2300 -9.6203 19 6 -0.4916 -6.2275 -8.4914 20 8 0.6358 -6.0272 -7.6366 21 14 -0.4444 -7.9550 -9.1872 22 8 -0.8142 -5.4651 -10.8866 23 6 -0.6497 -4.3683 -11.6419 24 6 -0.1717 -3.3755 -10.8745 25 7 -0.2202 -3.3460 -7.1684 26 6 -0.4906 -2.8559 -2.4492 27 6 0.0203 -2.1349 -1.1996 28 1 -0.3429 1.0566 -2.4486 29 1 1.1103 0.0289 -2.4487 30 1 -0.1264 -0.1783 -4.5880 31 1 -1.5801 -0.6915 -3.6979 32 1 -1.2804 -3.3559 -4.8504 33 1 2.9017 -1.2977 -7.3280 34 1 -1.4098 -6.0909 -7.9201 35 1 1.4889 -6.1333 -8.0794 36 1 0.7873 -8.1437 -9.9950 37 1 -0.4860 -8.9482 -8.0841 38 1 -0.8665 -4.2959 -12.6975 39 1 0.0660 -2.3693 -11.1868 40 1 -1.5807 -2.8555 -2.4490 41 1 -0.1280 -3.8838 -2.4497 42 1 -0.3431 -2.6488 -0.3097 43 1 1.1103 -2.1349 -1.1996 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081500_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:37:57 Heat of formation + Delta-G solvation = 176.978673 kcal Electronic energy + Delta-G solvation = -27145.421927 eV Core-core repulsion = 23313.554584 eV Total energy + Delta-G solvation = -3831.867343 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.27793 -43.57725 -43.12744 -40.13960 -38.92142 -37.29959 -36.14672 -34.47967 -34.00847 -33.71375 -32.30858 -30.94088 -28.19369 -26.65861 -26.34701 -25.97805 -25.02944 -23.50932 -23.22217 -22.11426 -21.47075 -21.21716 -20.54396 -20.26654 -19.88550 -19.17838 -18.41304 -18.19978 -18.03761 -17.63006 -17.27528 -17.11729 -16.95027 -16.51892 -16.43484 -16.13234 -15.84105 -15.71561 -15.36940 -15.23245 -14.91409 -14.72036 -14.55249 -14.53420 -14.32790 -14.20436 -13.88826 -13.63861 -13.25952 -13.08940 -12.86424 -12.69038 -11.60738 -11.45999 -11.42858 -11.23176 -10.68774 -10.22361 -5.58381 -1.22005 -1.09041 -0.65077 -0.04613 0.46482 0.52204 0.66653 0.71289 0.78195 0.83031 0.94770 1.08529 1.30409 1.46571 1.56943 1.65088 1.83411 1.96935 2.00095 2.08236 2.18298 2.22107 2.32446 2.38721 2.41760 2.45940 2.66259 2.79653 2.84609 2.89583 2.91448 3.15443 3.25811 3.29992 3.43524 3.51857 3.64629 3.64780 3.82729 3.97229 4.10769 4.25178 4.49478 4.64696 4.75952 5.10933 5.26850 5.39693 5.52069 6.55732 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.003409 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.133097 B = 8211.902282 C = 9061.661631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.437 0.563 4 H 0.437 0.563 5 C 0.024 3.976 6 H 0.143 0.857 7 C -0.137 4.137 8 C -0.130 4.130 9 C 0.157 3.843 10 H 0.100 0.900 11 N -0.686 5.686 12 C 0.601 3.399 13 N -0.613 5.613 14 C 0.381 3.619 15 N -0.581 5.581 16 C 0.491 3.509 17 C -0.131 4.131 18 C 0.016 3.984 19 C -0.031 4.031 20 O -0.515 6.515 21 Si 0.709 3.291 22 O -0.163 6.163 23 C -0.019 4.019 24 C -0.177 4.177 25 N -0.575 5.575 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.209 0.791 34 H 0.140 0.860 35 H 0.376 0.624 36 H -0.256 1.256 37 H -0.248 1.248 38 H 0.216 0.784 39 H 0.159 0.841 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 14.812 28.140 31.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.266 0.734 4 H 0.265 0.735 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.176 4.176 8 C -0.170 4.170 9 C 0.051 3.949 10 H 0.118 0.882 11 N -0.325 5.325 12 C 0.235 3.765 13 N -0.343 5.343 14 C 0.083 3.917 15 N -0.305 5.305 16 C 0.216 3.784 17 C -0.134 4.134 18 C -0.038 4.038 19 C -0.140 4.140 20 O -0.321 6.321 21 Si 0.607 3.393 22 O -0.059 6.059 23 C -0.086 4.086 24 C -0.197 4.197 25 N -0.302 5.302 26 C -0.167 4.167 27 C -0.174 4.174 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.257 0.743 33 H 0.225 0.775 34 H 0.157 0.843 35 H 0.223 0.777 36 H -0.179 1.179 37 H -0.172 1.172 38 H 0.233 0.767 39 H 0.177 0.823 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.373 13.845 28.400 31.684 hybrid contribution 0.967 0.965 0.456 1.440 sum -1.406 14.810 28.855 32.464 Atomic orbital electron populations 1.42646 1.21336 1.20731 1.18644 0.73742 0.73404 0.73458 1.23597 1.04483 0.95762 0.84187 0.83879 1.22037 1.03300 1.00141 0.92113 1.21961 1.01962 0.95810 0.97270 1.20984 1.00706 0.90267 0.82902 0.88218 1.43937 1.28914 1.54428 1.05184 1.19210 0.85642 0.85126 0.86475 1.68516 1.10034 1.25074 1.30722 1.25168 0.95821 0.89052 0.81658 1.69169 1.15486 1.13574 1.32299 1.20174 0.84324 0.85343 0.88531 1.18876 1.09942 0.93083 0.91539 1.23027 1.00282 0.95659 0.84865 1.24395 0.93171 1.06191 0.90264 1.86672 1.15891 1.92597 1.36909 0.94286 0.89532 0.73259 0.82238 1.83776 1.66592 1.37704 1.17802 1.24100 1.03475 0.83521 0.97455 1.22757 1.05233 1.01382 0.90340 1.68577 1.35890 1.26399 0.99340 1.21785 1.02532 1.00915 0.91489 1.22009 1.03315 0.90737 1.01359 0.88954 0.88907 0.89092 0.90493 0.74328 0.77518 0.84285 0.77663 1.17946 1.17176 0.76719 0.82287 0.89832 0.88731 0.88622 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 23.96 4.15 -4.67 -0.02 23.94 16 2 H 0.43 -16.76 8.90 -39.29 -0.35 -17.11 16 3 H 0.44 -17.09 8.96 -39.29 -0.35 -17.44 16 4 H 0.44 -17.15 8.96 -39.29 -0.35 -17.50 16 5 C 0.02 -0.74 3.02 -67.72 -0.20 -0.95 16 6 H 0.14 -4.54 8.14 -51.93 -0.42 -4.96 16 7 C -0.14 3.73 5.43 -26.73 -0.15 3.58 16 8 C -0.13 2.73 5.51 -26.73 -0.15 2.59 16 9 C 0.16 -3.01 2.46 -67.93 -0.17 -3.18 16 10 H 0.10 -1.77 7.54 -51.93 -0.39 -2.16 16 11 N -0.69 9.77 5.21 -55.67 -0.29 9.48 16 12 C 0.60 -5.75 8.45 -322.14 -2.72 -8.48 16 13 N -0.61 6.10 9.34 -15.38 -0.14 5.96 16 14 C 0.38 -3.39 12.39 -91.57 -1.13 -4.52 16 15 N -0.58 3.51 10.46 -12.55 -0.13 3.38 16 16 C 0.49 -2.79 6.40 -156.13 -1.00 -3.78 16 17 C -0.13 0.74 6.11 -103.18 -0.63 0.11 16 18 C 0.02 -0.11 6.29 -35.09 -0.22 -0.33 16 19 C -0.03 0.25 2.78 36.01 0.10 0.35 16 20 O -0.52 3.72 10.96 -35.23 -0.39 3.33 16 21 Si 0.71 -5.82 32.27 -169.99 -5.48 -11.31 16 22 O -0.16 1.15 9.18 7.22 0.07 1.22 16 23 C -0.02 0.16 12.04 29.34 0.35 0.51 16 24 C -0.18 1.21 11.15 -37.50 -0.42 0.79 16 25 N -0.57 3.98 9.60 -11.93 -0.11 3.87 16 26 C -0.13 2.89 5.39 -26.70 -0.14 2.75 16 27 C -0.14 3.79 5.43 -26.70 -0.15 3.65 16 28 H 0.09 -2.55 8.14 -51.92 -0.42 -2.97 16 29 H 0.09 -2.51 8.14 -51.93 -0.42 -2.94 16 30 H 0.09 -1.55 8.14 -51.93 -0.42 -1.97 16 31 H 0.08 -1.58 8.14 -51.93 -0.42 -2.01 16 32 H 0.42 -6.13 8.72 -40.82 -0.36 -6.49 16 33 H 0.21 -2.57 8.06 -52.48 -0.42 -2.99 16 34 H 0.14 -1.28 7.96 -51.93 -0.41 -1.70 16 35 H 0.38 -3.28 8.70 45.56 0.40 -2.88 16 36 H -0.26 1.35 7.11 56.52 0.40 1.75 16 37 H -0.25 1.41 7.11 56.52 0.40 1.82 16 38 H 0.22 -2.53 8.06 -52.48 -0.42 -2.95 16 39 H 0.16 -1.25 8.06 -52.49 -0.42 -1.68 16 40 H 0.08 -1.88 8.14 -51.93 -0.42 -2.31 16 41 H 0.09 -1.90 8.14 -51.93 -0.42 -2.32 16 42 H 0.10 -2.75 8.14 -51.93 -0.42 -3.17 16 43 H 0.09 -2.59 8.14 -51.93 -0.42 -3.02 16 LS Contribution 355.44 15.07 5.36 5.36 Total: 1.00 -42.80 355.44 -13.86 -56.66 By element: Atomic # 1 Polarization: -88.90 SS G_CDS: -6.09 Total: -94.99 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -6.62 Total: -6.90 kcal Atomic # 7 Polarization: 47.33 SS G_CDS: -0.70 Total: 46.63 kcal Atomic # 8 Polarization: 4.87 SS G_CDS: -0.32 Total: 4.55 kcal Atomic # 14 Polarization: -5.82 SS G_CDS: -5.48 Total: -11.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -42.80 -13.86 -56.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.643 kcal (2) G-P(sol) polarization free energy of solvation -42.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds