Wall clock time and date at job start Mon Mar 8 2021 07:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00902 * 109.47334 * 1 2 4 4 H 1.00897 * 109.47352 * 239.99147 * 1 2 3 5 5 C 1.46904 * 109.46894 * 119.99262 * 1 2 3 6 6 H 1.09003 * 109.46933 * 180.02562 * 5 1 2 7 7 C 1.52990 * 109.47694 * 300.00290 * 5 1 2 8 8 C 1.53004 * 109.47646 * 180.02562 * 7 5 1 9 9 C 1.53000 * 109.46621 * 299.99748 * 8 7 5 10 10 H 1.08998 * 109.47352 * 300.00377 * 9 8 7 11 11 N 1.46497 * 109.46965 * 179.97438 * 9 8 7 12 12 C 1.38009 * 119.99782 * 85.00276 * 11 9 8 13 13 N 1.33091 * 120.03516 * 359.97438 * 12 11 9 14 14 C 1.32169 * 120.12370 * 179.97438 * 13 12 11 15 15 N 1.32103 * 120.19866 * 0.02562 * 14 13 12 16 16 C 1.33270 * 120.07021 * 359.97438 * 15 14 13 17 17 C 1.48028 * 120.06536 * 179.97438 * 16 15 14 18 18 C 1.36069 * 127.15097 * 132.88288 * 17 16 15 19 19 C 1.50703 * 125.77372 * 0.03667 * 18 17 16 20 20 O 1.42897 * 109.47266 * 322.80708 * 19 18 17 21 21 Si 1.86301 * 109.46789 * 202.80342 * 19 18 17 22 22 O 1.33854 * 108.43979 * 179.89823 * 18 17 16 23 23 C 1.34183 * 110.82274 * 0.38625 * 22 18 17 24 24 C 1.34284 * 109.04803 * 359.76469 * 23 22 18 25 25 N 1.32856 * 120.03156 * 179.97438 * 12 11 9 26 26 C 1.53005 * 109.47085 * 60.00077 * 9 8 7 27 27 C 1.53000 * 109.46852 * 60.00724 * 5 1 2 28 28 H 1.09010 * 109.47012 * 300.00350 * 7 5 1 29 29 H 1.08999 * 109.47379 * 59.99544 * 7 5 1 30 30 H 1.08998 * 109.47183 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.46865 * 59.99858 * 8 7 5 32 32 H 0.97000 * 120.00486 * 264.99867 * 11 9 8 33 33 H 1.08007 * 119.89910 * 180.02562 * 14 13 12 34 34 H 1.08999 * 109.46671 * 82.81201 * 19 18 17 35 35 H 0.96707 * 113.99878 * 299.99605 * 20 19 18 36 36 H 1.48503 * 109.99867 * 58.68437 * 21 19 18 37 37 H 1.48493 * 110.00138 * 180.02562 * 21 19 18 38 38 H 1.08005 * 125.47590 * 179.74406 * 23 22 18 39 39 H 1.07997 * 127.00553 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47190 * 59.99686 * 26 9 8 41 41 H 1.08998 * 109.47043 * 179.97438 * 26 9 8 42 42 H 1.08998 * 109.47530 * 59.99781 * 27 5 1 43 43 H 1.09003 * 109.46875 * 299.99452 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4757 0.8237 5 6 -0.4896 -0.6924 -1.1996 6 1 -1.5797 -0.6920 -1.1998 7 6 0.0204 0.0289 -2.4487 8 6 -0.4901 -0.6919 -3.6981 9 6 0.0194 -2.1345 -3.6984 10 1 1.1094 -2.1349 -3.6985 11 7 -0.4698 -2.8249 -4.8944 12 6 0.2226 -2.7198 -6.0835 13 7 1.3346 -1.9911 -6.1447 14 6 1.9994 -1.8897 -7.2826 15 7 1.5637 -2.5102 -8.3643 16 6 0.4511 -3.2420 -8.3119 17 6 -0.0374 -3.9368 -9.5242 18 6 -0.4496 -5.2300 -9.6203 19 6 -0.4916 -6.2275 -8.4914 20 8 0.6358 -6.0272 -7.6366 21 14 -0.4444 -7.9550 -9.1872 22 8 -0.8142 -5.4651 -10.8866 23 6 -0.6497 -4.3683 -11.6419 24 6 -0.1717 -3.3755 -10.8745 25 7 -0.2202 -3.3460 -7.1684 26 6 -0.4906 -2.8559 -2.4492 27 6 0.0203 -2.1349 -1.1996 28 1 -0.3429 1.0566 -2.4486 29 1 1.1103 0.0289 -2.4487 30 1 -0.1264 -0.1783 -4.5880 31 1 -1.5801 -0.6915 -3.6979 32 1 -1.2804 -3.3559 -4.8504 33 1 2.9017 -1.2977 -7.3280 34 1 -1.4098 -6.0909 -7.9201 35 1 1.4889 -6.1333 -8.0794 36 1 0.7873 -8.1437 -9.9950 37 1 -0.4860 -8.9482 -8.0841 38 1 -0.8665 -4.2959 -12.6975 39 1 0.0660 -2.3693 -11.1868 40 1 -1.5807 -2.8555 -2.4490 41 1 -0.1280 -3.8838 -2.4497 42 1 -0.3431 -2.6488 -0.3097 43 1 1.1103 -2.1349 -1.1996 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:37:56 Heat of formation + Delta-G solvation = 145.545305 kcal Electronic energy + Delta-G solvation = -27146.784980 eV Core-core repulsion = 23313.554584 eV Total energy + Delta-G solvation = -3833.230396 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.66698 -42.53352 -41.10579 -38.47320 -38.27377 -35.87950 -35.42647 -33.50606 -32.88159 -32.02751 -31.69425 -29.20450 -27.51945 -25.91802 -25.27677 -24.10805 -23.35624 -22.53193 -21.59032 -21.36805 -19.87052 -19.51361 -18.68596 -18.40115 -18.25250 -17.71119 -17.53479 -17.45157 -16.73434 -16.62037 -16.45398 -15.87220 -15.77832 -15.39463 -15.24037 -14.95680 -14.63537 -14.33535 -14.17926 -14.01569 -13.95928 -13.64131 -13.42818 -13.06291 -12.90885 -12.78292 -12.39091 -12.28040 -12.26232 -12.18291 -11.61205 -11.42380 -11.01633 -10.83431 -10.73215 -10.59962 -9.68904 -9.61183 -4.98822 -0.44862 0.08141 0.57235 1.12503 1.29581 1.50819 1.52321 1.66088 1.72824 1.86757 2.53598 2.75748 2.96015 3.01771 3.08959 3.23106 3.35807 3.55539 3.61075 3.69352 3.86149 3.91353 3.93773 4.08943 4.12831 4.19729 4.28074 4.33439 4.47146 4.49383 4.55826 4.59906 4.61741 4.68813 4.80386 4.89815 4.95984 4.97352 5.04110 5.06004 5.19666 5.25642 5.29339 5.38790 5.52251 5.87628 5.97227 6.13931 6.33807 7.28059 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.003409 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.133097 B = 8211.902282 C = 9061.661631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.443 0.557 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.052 3.948 6 H 0.154 0.846 7 C -0.134 4.134 8 C -0.129 4.129 9 C 0.149 3.851 10 H 0.083 0.917 11 N -0.676 5.676 12 C 0.585 3.415 13 N -0.605 5.605 14 C 0.372 3.628 15 N -0.611 5.611 16 C 0.475 3.525 17 C -0.151 4.151 18 C 0.007 3.993 19 C -0.032 4.032 20 O -0.526 6.526 21 Si 0.787 3.213 22 O -0.167 6.167 23 C -0.010 4.010 24 C -0.200 4.200 25 N -0.594 5.594 26 C -0.127 4.127 27 C -0.134 4.134 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.419 0.581 33 H 0.236 0.764 34 H 0.149 0.851 35 H 0.380 0.620 36 H -0.295 1.295 37 H -0.280 1.280 38 H 0.250 0.750 39 H 0.162 0.838 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 16.099 30.924 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.273 0.727 3 H 0.282 0.718 4 H 0.283 0.717 5 C -0.054 4.054 6 H 0.172 0.828 7 C -0.173 4.173 8 C -0.169 4.169 9 C 0.045 3.955 10 H 0.102 0.898 11 N -0.313 5.313 12 C 0.220 3.780 13 N -0.336 5.336 14 C 0.074 3.926 15 N -0.337 5.337 16 C 0.199 3.801 17 C -0.155 4.155 18 C -0.047 4.047 19 C -0.140 4.140 20 O -0.332 6.332 21 Si 0.689 3.311 22 O -0.063 6.063 23 C -0.076 4.076 24 C -0.220 4.220 25 N -0.323 5.323 26 C -0.166 4.166 27 C -0.172 4.172 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.252 0.748 34 H 0.167 0.833 35 H 0.228 0.772 36 H -0.222 1.222 37 H -0.207 1.207 38 H 0.266 0.734 39 H 0.180 0.820 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.985 15.171 31.275 34.889 hybrid contribution 1.183 0.581 -0.362 1.367 sum -1.802 15.752 30.914 34.742 Atomic orbital electron populations 1.42224 1.22027 1.21063 1.16585 0.72650 0.71839 0.71720 1.22848 1.04759 0.93211 0.84580 0.82798 1.21923 1.03499 1.00479 0.91350 1.21837 1.01671 0.94408 0.98939 1.21385 0.99931 0.91757 0.82385 0.89841 1.44413 1.28159 1.53660 1.05075 1.19713 0.86118 0.84912 0.87260 1.68623 1.09911 1.24892 1.30138 1.25791 0.96541 0.88807 0.81431 1.69157 1.16057 1.14853 1.33597 1.20292 0.84847 0.85882 0.89031 1.19208 1.10269 0.93760 0.92217 1.23164 1.00585 0.95675 0.85238 1.24561 0.93263 1.06063 0.90109 1.86653 1.16409 1.92675 1.37481 0.93414 0.87196 0.71185 0.79265 1.83773 1.66627 1.38185 1.17735 1.24754 1.01763 0.82585 0.98453 1.22944 1.06588 1.02115 0.90401 1.68593 1.36376 1.27507 0.99814 1.21754 1.02732 0.99773 0.92309 1.21953 1.03592 0.92739 0.98884 0.87578 0.88658 0.93585 0.90799 0.74313 0.74849 0.83343 0.77202 1.22190 1.20672 0.73411 0.82037 0.89448 0.91522 0.86602 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.55 4.15 -168.68 -0.70 46.85 16 2 H 0.44 -35.00 8.90 -89.70 -0.80 -35.80 16 3 H 0.45 -36.12 8.96 -89.69 -0.80 -36.93 16 4 H 0.45 -36.46 8.96 -89.70 -0.80 -37.27 16 5 C 0.05 -3.33 3.02 44.91 0.14 -3.20 16 6 H 0.15 -10.03 8.14 -2.39 -0.02 -10.04 16 7 C -0.13 7.22 5.43 30.59 0.17 7.38 16 8 C -0.13 5.06 5.51 30.60 0.17 5.23 16 9 C 0.15 -5.26 2.46 44.99 0.11 -5.15 16 10 H 0.08 -2.67 7.54 -2.39 -0.02 -2.69 16 11 N -0.68 16.72 5.21 -330.04 -1.72 15.00 16 12 C 0.59 -8.90 8.45 261.25 2.21 -6.69 16 13 N -0.61 9.79 9.34 -202.57 -1.89 7.90 16 14 C 0.37 -5.33 12.39 180.68 2.24 -3.09 16 15 N -0.61 5.03 10.46 -193.62 -2.02 3.01 16 16 C 0.47 -3.51 6.40 137.12 0.88 -2.63 16 17 C -0.15 1.20 6.11 -18.93 -0.12 1.08 16 18 C 0.01 -0.08 6.29 25.18 0.16 0.08 16 19 C -0.03 0.43 2.78 71.24 0.20 0.62 16 20 O -0.53 5.85 10.96 -148.98 -1.63 4.22 16 21 Si 0.79 -11.14 32.27 68.60 2.21 -8.93 16 22 O -0.17 2.05 9.18 2.93 0.03 2.07 16 23 C -0.01 0.15 12.04 66.92 0.81 0.95 16 24 C -0.20 2.19 11.15 23.62 0.26 2.45 16 25 N -0.59 5.86 9.60 -191.66 -1.84 4.02 16 26 C -0.13 5.46 5.39 30.61 0.17 5.63 16 27 C -0.13 7.47 5.43 30.61 0.17 7.64 16 28 H 0.11 -5.90 8.14 -2.38 -0.02 -5.92 16 29 H 0.09 -5.11 8.14 -2.39 -0.02 -5.13 16 30 H 0.05 -1.36 8.14 -2.39 -0.02 -1.38 16 31 H 0.07 -2.86 8.14 -2.39 -0.02 -2.88 16 32 H 0.42 -10.73 8.72 -92.71 -0.81 -11.53 16 33 H 0.24 -5.18 8.06 -2.91 -0.02 -5.21 16 34 H 0.15 -2.38 7.96 -2.39 -0.02 -2.39 16 35 H 0.38 -5.24 8.70 -74.05 -0.64 -5.89 16 36 H -0.30 2.24 7.11 99.48 0.71 2.95 16 37 H -0.28 2.50 7.11 99.48 0.71 3.21 16 38 H 0.25 -5.80 8.06 -2.91 -0.02 -5.82 16 39 H 0.16 -2.04 8.06 -2.91 -0.02 -2.06 16 40 H 0.09 -3.81 8.14 -2.39 -0.02 -3.83 16 41 H 0.07 -2.46 8.14 -2.39 -0.02 -2.48 16 42 H 0.12 -6.82 8.14 -2.39 -0.02 -6.84 16 43 H 0.10 -5.36 8.14 -2.39 -0.02 -5.38 16 Total: 1.00 -96.12 355.44 -2.75 -98.87 By element: Atomic # 1 Polarization: -180.60 SS G_CDS: -2.73 Total: -183.33 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.55 Total: 10.31 kcal Atomic # 7 Polarization: 84.96 SS G_CDS: -8.18 Total: 76.78 kcal Atomic # 8 Polarization: 7.90 SS G_CDS: -1.61 Total: 6.29 kcal Atomic # 14 Polarization: -11.14 SS G_CDS: 2.21 Total: -8.93 kcal Total: -96.12 -2.75 -98.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.417 kcal (2) G-P(sol) polarization free energy of solvation -96.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds