Wall clock time and date at job start Mon Mar 8 2021 08:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00903 * 1 3 3 H 1.00899 * 109.46725 * 1 2 4 4 H 1.00900 * 109.47264 * 240.00682 * 1 2 3 5 5 C 1.46899 * 109.47307 * 120.00054 * 1 2 3 6 6 H 1.08995 * 109.47636 * 300.00202 * 5 1 2 7 7 C 1.53005 * 109.47007 * 60.00484 * 5 1 2 8 8 C 1.53000 * 109.47003 * 179.97438 * 7 5 1 9 9 C 1.52999 * 109.46977 * 299.99668 * 8 7 5 10 10 H 1.09000 * 109.46825 * 300.00004 * 9 8 7 11 11 N 1.46503 * 109.46907 * 179.97438 * 9 8 7 12 12 C 1.34777 * 120.00040 * 154.99790 * 11 9 8 13 13 O 1.21548 * 119.99766 * 0.02562 * 12 11 9 14 14 C 1.47906 * 120.00027 * 179.97438 * 12 11 9 15 15 C 1.39970 * 120.06912 * 179.97438 * 14 12 11 16 16 C 1.38410 * 118.02150 * 179.75233 * 15 14 12 17 17 C 1.39807 * 118.00700 * 0.52687 * 16 15 14 18 18 C 1.48062 * 120.07600 * 179.73779 * 17 16 15 19 19 C 1.36052 * 127.14557 * 226.61778 * 18 17 16 20 20 C 1.50700 * 125.78336 * 0.04180 * 19 18 17 21 21 O 1.42896 * 109.47105 * 37.10835 * 20 19 18 22 22 Si 1.86302 * 109.47387 * 157.10970 * 20 19 18 23 23 O 1.33936 * 108.43675 * 180.02562 * 19 18 17 24 24 C 1.34193 * 110.80154 * 359.97438 * 23 19 18 25 25 C 1.34299 * 109.04310 * 0.02562 * 24 23 19 26 26 N 1.33111 * 119.84926 * 359.46367 * 17 16 15 27 27 N 1.28367 * 122.12136 * 0.27678 * 26 17 16 28 28 C 1.52995 * 109.46969 * 60.00220 * 9 8 7 29 29 C 1.52999 * 109.46833 * 180.02562 * 5 1 2 30 30 H 1.08995 * 109.47153 * 59.99421 * 7 5 1 31 31 H 1.09002 * 109.46432 * 299.99437 * 7 5 1 32 32 H 1.09001 * 109.46720 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46947 * 59.99640 * 8 7 5 34 34 H 0.97002 * 120.00160 * 335.00109 * 11 9 8 35 35 H 1.08000 * 120.98245 * 0.02562 * 15 14 12 36 36 H 1.07997 * 120.99363 * 180.26574 * 16 15 14 37 37 H 1.09004 * 109.47092 * 277.11018 * 20 19 18 38 38 H 0.96704 * 113.99967 * 180.02562 * 21 20 19 39 39 H 1.48493 * 109.99965 * 178.67940 * 22 20 19 40 40 H 1.48494 * 109.99946 * 300.00301 * 22 20 19 41 41 H 1.07998 * 125.47542 * 180.02562 * 24 23 19 42 42 H 1.08002 * 126.99335 * 179.73929 * 25 24 23 43 43 H 1.09000 * 109.47524 * 60.00212 * 28 9 8 44 44 H 1.09005 * 109.46890 * 179.97438 * 28 9 8 45 45 H 1.09004 * 109.47259 * 299.99863 * 29 5 1 46 46 H 1.09001 * 109.47672 * 60.00326 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4755 0.8239 5 6 -0.4897 -0.6925 -1.1994 6 1 -0.1264 -0.1788 -2.0894 7 6 0.0202 -2.1351 -1.1993 8 6 -0.4904 -2.8565 -2.4482 9 6 -2.0204 -2.8564 -2.4475 10 1 -2.3833 -3.3701 -1.5573 11 7 -2.5092 -3.5467 -3.6437 12 6 -3.7312 -4.1153 -3.6415 13 8 -4.4278 -4.0549 -2.6473 14 6 -4.2250 -4.8117 -4.8494 15 6 -5.4936 -5.4031 -4.8485 16 6 -5.9153 -6.0392 -6.0032 17 6 -5.0436 -6.0617 -7.0961 18 6 -5.4457 -6.7346 -8.3521 19 6 -4.7038 -7.6009 -9.0939 20 6 -3.3022 -8.0552 -8.7777 21 8 -3.1596 -8.2118 -7.3645 22 14 -2.9726 -9.6843 -9.6193 23 8 -5.4303 -7.9817 -10.1527 24 6 -6.6369 -7.3947 -10.1387 25 6 -6.7277 -6.6054 -9.0560 26 7 -3.8536 -5.4720 -7.0066 27 7 -3.4650 -4.8776 -5.9372 28 6 -2.5302 -1.4139 -2.4476 29 6 -2.0197 -0.6919 -1.1996 30 1 -0.3431 -2.6488 -0.3093 31 1 1.1102 -2.1350 -1.1994 32 1 -0.1267 -3.8841 -2.4483 33 1 -0.1274 -2.3428 -3.3385 34 1 -1.9535 -3.5946 -4.4373 35 1 -6.1263 -5.3604 -3.9743 36 1 -6.8868 -6.5078 -6.0569 37 1 -2.5898 -7.3113 -9.1345 38 1 -2.2799 -8.5028 -7.0877 39 1 -1.5829 -10.1276 -9.3413 40 1 -3.9372 -10.7071 -9.1415 41 1 -7.4106 -7.5345 -10.8792 42 1 -7.5706 -5.9962 -8.7647 43 1 -2.1673 -0.9003 -3.3378 44 1 -3.6203 -1.4139 -2.4475 45 1 -2.3834 -1.2054 -0.3096 46 1 -2.3827 0.3359 -1.1999 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:05:04 Heat of formation + Delta-G solvation = 90.175719 kcal Electronic energy + Delta-G solvation = -30024.047766 eV Core-core repulsion = 25806.933943 eV Total energy + Delta-G solvation = -4217.113823 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.160 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.61762 -42.29483 -41.33976 -40.27856 -38.17337 -37.47908 -35.52508 -34.45781 -34.29965 -32.66399 -32.03934 -31.66300 -29.50122 -27.30340 -26.30435 -25.50942 -24.22133 -23.70454 -22.71691 -21.98967 -21.55095 -21.34475 -19.56477 -18.88236 -18.69535 -18.67278 -18.45442 -18.29719 -17.52097 -17.29098 -17.15679 -16.75443 -16.61105 -16.12053 -15.92082 -15.65619 -15.61932 -15.13070 -15.03456 -14.82351 -14.47508 -14.22714 -14.17274 -14.08840 -13.71975 -13.68122 -13.39365 -12.99732 -12.91263 -12.81805 -12.51031 -12.27637 -12.18195 -11.80026 -11.71525 -11.54981 -11.47554 -11.36389 -11.07116 -10.79259 -10.49420 -10.25752 -9.47904 -4.97945 -0.91731 -0.41344 0.50117 1.15093 1.20021 1.45204 1.53359 1.53963 1.63517 1.81477 1.88991 2.42672 2.59978 3.01613 3.08771 3.23772 3.33272 3.41413 3.47736 3.53877 3.61823 3.67449 3.70360 3.79590 3.86244 3.93029 4.02862 4.08534 4.17868 4.25845 4.34051 4.41890 4.48128 4.52894 4.55961 4.62585 4.63653 4.67796 4.69795 4.84854 4.89146 4.96484 5.00256 5.04065 5.05802 5.14774 5.20236 5.33065 5.37976 5.97184 6.17674 6.37328 6.83867 7.31451 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.002355 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.084122 B =11887.844470 C =12753.963174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.157 0.843 7 C -0.136 4.136 8 C -0.127 4.127 9 C 0.130 3.870 10 H 0.078 0.922 11 N -0.699 5.699 12 C 0.583 3.417 13 O -0.556 6.556 14 C -0.005 4.005 15 C -0.065 4.065 16 C -0.110 4.110 17 C 0.178 3.822 18 C -0.159 4.159 19 C 0.032 3.968 20 C -0.037 4.037 21 O -0.548 6.548 22 Si 0.777 3.223 23 O -0.172 6.172 24 C -0.011 4.011 25 C -0.209 4.209 26 N -0.239 5.239 27 N -0.210 5.210 28 C -0.133 4.133 29 C -0.136 4.136 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.418 0.582 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.116 0.884 38 H 0.403 0.597 39 H -0.267 1.267 40 H -0.307 1.307 41 H 0.250 0.750 42 H 0.176 0.824 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.091 0.909 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.538 24.451 21.891 37.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.273 0.727 5 C -0.054 4.054 6 H 0.175 0.825 7 C -0.174 4.174 8 C -0.165 4.165 9 C 0.027 3.973 10 H 0.096 0.904 11 N -0.350 5.350 12 C 0.366 3.634 13 O -0.433 6.433 14 C -0.151 4.151 15 C -0.093 4.093 16 C -0.138 4.138 17 C 0.036 3.964 18 C -0.162 4.162 19 C -0.020 4.020 20 C -0.145 4.145 21 O -0.359 6.359 22 Si 0.679 3.321 23 O -0.069 6.069 24 C -0.076 4.076 25 C -0.228 4.228 26 N -0.084 5.084 27 N -0.057 5.057 28 C -0.172 4.172 29 C -0.174 4.174 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.255 0.745 35 H 0.191 0.809 36 H 0.194 0.806 37 H 0.134 0.866 38 H 0.254 0.746 39 H -0.192 1.192 40 H -0.235 1.235 41 H 0.266 0.734 42 H 0.193 0.807 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.153 23.964 21.584 37.009 hybrid contribution -1.300 -0.581 1.397 1.995 sum 16.852 23.383 22.981 36.864 Atomic orbital electron populations 1.42224 1.22128 1.20903 1.16640 0.71666 0.71833 0.72716 1.22854 0.96045 0.96126 0.90356 0.82535 1.21967 1.03939 0.92545 0.98909 1.21751 0.91140 1.02861 1.00767 1.21454 0.95782 0.92904 0.87159 0.90415 1.45931 1.16100 1.54420 1.18511 1.17470 0.82631 0.78186 0.85073 1.90812 1.57458 1.61044 1.33977 1.22903 0.94824 1.01258 0.96132 1.22529 0.95199 0.91988 0.99610 1.22646 1.02250 0.97482 0.91466 1.20650 0.90996 0.91782 0.92934 1.19532 0.96585 1.03507 0.96588 1.21718 0.94295 0.98153 0.87813 1.23908 0.91055 1.12582 0.87002 1.86418 1.39398 1.90327 1.19732 0.93561 0.77261 0.72150 0.89080 1.83762 1.24998 1.57712 1.40434 1.24807 0.85546 0.96032 1.01259 1.23087 0.97610 1.05264 0.96887 1.73322 1.13408 1.05784 1.15869 1.73095 1.27362 1.09719 0.95529 1.21847 1.00832 0.94346 1.00216 1.21927 0.92884 1.03790 0.98839 0.88752 0.86371 0.91102 0.89104 0.74494 0.80868 0.80584 0.86619 0.74550 1.19215 1.23506 0.73404 0.80675 0.89989 0.93644 0.89050 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.20 4.15 -168.68 -0.70 46.50 16 2 H 0.45 -36.34 8.96 -89.69 -0.80 -37.15 16 3 H 0.45 -35.90 8.96 -89.69 -0.80 -36.70 16 4 H 0.44 -34.61 8.90 -89.69 -0.80 -35.41 16 5 C 0.05 -3.31 3.02 44.92 0.14 -3.17 16 6 H 0.16 -10.16 8.14 -2.39 -0.02 -10.18 16 7 C -0.14 7.52 5.43 30.60 0.17 7.68 16 8 C -0.13 5.41 5.39 30.59 0.16 5.57 16 9 C 0.13 -4.44 2.46 44.99 0.11 -4.33 16 10 H 0.08 -2.34 7.58 -2.39 -0.02 -2.36 16 11 N -0.70 17.28 5.07 -445.35 -2.26 15.02 16 12 C 0.58 -9.16 7.77 86.80 0.67 -8.48 16 13 O -0.56 5.97 16.04 -3.87 -0.06 5.91 16 14 C 0.00 0.06 6.83 41.97 0.29 0.35 16 15 C -0.06 0.84 9.71 22.73 0.22 1.06 16 16 C -0.11 1.36 9.89 22.69 0.22 1.59 16 17 C 0.18 -1.52 5.60 41.94 0.23 -1.28 16 18 C -0.16 1.38 5.91 -18.93 -0.11 1.27 16 19 C 0.03 -0.29 6.33 25.18 0.16 -0.13 16 20 C -0.04 0.47 2.76 71.24 0.20 0.66 16 21 O -0.55 6.05 10.93 -148.98 -1.63 4.42 16 22 Si 0.78 -10.14 32.27 68.60 2.21 -7.92 16 23 O -0.17 1.91 9.18 2.07 0.02 1.93 16 24 C -0.01 0.17 12.04 66.92 0.81 0.97 16 25 C -0.21 2.79 11.10 23.62 0.26 3.05 16 26 N -0.24 1.83 10.57 -48.33 -0.51 1.32 16 27 N -0.21 2.26 10.73 -48.47 -0.52 1.74 16 28 C -0.13 5.09 5.49 30.58 0.17 5.25 16 29 C -0.14 7.16 5.43 30.58 0.17 7.33 16 30 H 0.09 -5.19 8.14 -2.39 -0.02 -5.21 16 31 H 0.12 -6.95 8.14 -2.39 -0.02 -6.97 16 32 H 0.07 -2.65 8.14 -2.39 -0.02 -2.67 16 33 H 0.09 -3.96 8.14 -2.38 -0.02 -3.98 16 34 H 0.42 -10.81 7.95 -92.71 -0.74 -11.55 16 35 H 0.17 -2.75 7.71 -2.91 -0.02 -2.78 16 36 H 0.18 -3.01 8.06 -2.91 -0.02 -3.04 16 37 H 0.12 -1.83 7.96 -2.39 -0.02 -1.85 16 38 H 0.40 -7.57 8.74 -74.05 -0.65 -8.21 16 39 H -0.27 2.87 7.11 99.48 0.71 3.58 16 40 H -0.31 1.18 7.11 99.48 0.71 1.89 16 41 H 0.25 -5.92 8.06 -2.91 -0.02 -5.94 16 42 H 0.18 -3.13 8.06 -2.91 -0.02 -3.15 16 43 H 0.08 -3.17 8.14 -2.39 -0.02 -3.19 16 44 H 0.04 -1.28 8.14 -2.38 -0.02 -1.30 16 45 H 0.09 -4.74 8.14 -2.38 -0.02 -4.76 16 46 H 0.11 -5.94 8.14 -2.39 -0.02 -5.95 16 Total: 1.00 -98.34 382.54 -2.26 -100.60 By element: Atomic # 1 Polarization: -184.21 SS G_CDS: -2.68 Total: -186.90 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 3.86 Total: 17.38 kcal Atomic # 7 Polarization: 68.57 SS G_CDS: -3.99 Total: 64.58 kcal Atomic # 8 Polarization: 13.93 SS G_CDS: -1.67 Total: 12.26 kcal Atomic # 14 Polarization: -10.14 SS G_CDS: 2.21 Total: -7.92 kcal Total: -98.34 -2.26 -100.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.776 kcal (2) G-P(sol) polarization free energy of solvation -98.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds