Wall clock time and date at job start Mon Mar 8 2021 08:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00906 * 1 3 3 H 1.00894 * 109.46842 * 1 2 4 4 H 1.00897 * 109.47600 * 239.98912 * 1 2 3 5 5 C 1.46904 * 109.46758 * 119.99373 * 1 2 3 6 6 H 1.09003 * 109.47038 * 180.02562 * 5 1 2 7 7 C 1.53000 * 109.47313 * 300.00123 * 5 1 2 8 8 C 1.52995 * 109.47347 * 180.02562 * 7 5 1 9 9 C 1.53001 * 109.47129 * 299.99797 * 8 7 5 10 10 H 1.09003 * 109.47377 * 300.00380 * 9 8 7 11 11 N 1.46497 * 109.47574 * 179.97438 * 9 8 7 12 12 C 1.34772 * 120.00130 * 154.99778 * 11 9 8 13 13 O 1.21554 * 120.00136 * 0.02562 * 12 11 9 14 14 C 1.47886 * 119.99954 * 180.02562 * 12 11 9 15 15 C 1.39503 * 119.97852 * 180.02562 * 14 12 11 16 16 N 1.31941 * 120.01295 * 179.97438 * 15 14 12 17 17 C 1.33033 * 119.97291 * 0.02562 * 16 15 14 18 18 C 1.48021 * 120.02129 * 180.02562 * 17 16 15 19 19 C 1.36102 * 127.14831 * 46.54380 * 18 17 16 20 20 C 1.50696 * 125.78547 * 359.95637 * 19 18 17 21 21 O 1.42902 * 109.47161 * 37.23145 * 20 19 18 22 22 Si 1.86303 * 109.46927 * 157.22786 * 20 19 18 23 23 O 1.33918 * 108.42423 * 179.84116 * 19 18 17 24 24 C 1.34192 * 110.81186 * 0.44310 * 23 19 18 25 25 C 1.34290 * 109.05603 * 359.72750 * 24 23 19 26 26 C 1.40056 * 119.95924 * 359.97438 * 17 16 15 27 27 N 1.31496 * 119.98572 * 359.74405 * 26 17 16 28 28 C 1.53000 * 109.46841 * 59.99893 * 9 8 7 29 29 C 1.52993 * 109.47210 * 60.00068 * 5 1 2 30 30 H 1.08999 * 109.47453 * 59.99671 * 7 5 1 31 31 H 1.09009 * 109.46879 * 300.00259 * 7 5 1 32 32 H 1.09002 * 109.47371 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47192 * 60.00003 * 8 7 5 34 34 H 0.97006 * 119.99825 * 335.00596 * 11 9 8 35 35 H 1.07997 * 119.99202 * 359.95561 * 15 14 12 36 36 H 1.09000 * 109.47489 * 277.23322 * 20 19 18 37 37 H 0.96703 * 114.00193 * 59.99946 * 21 20 19 38 38 H 1.48502 * 109.99898 * 180.02562 * 22 20 19 39 39 H 1.48494 * 110.00133 * 301.32207 * 22 20 19 40 40 H 1.07993 * 125.47333 * 179.75551 * 24 23 19 41 41 H 1.08000 * 127.00076 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.00928 * 180.02562 * 26 17 16 43 43 H 1.08999 * 109.47443 * 60.00089 * 28 9 8 44 44 H 1.09001 * 109.47016 * 180.02562 * 28 9 8 45 45 H 1.09002 * 109.47462 * 60.00039 * 29 5 1 46 46 H 1.08994 * 109.47371 * 299.99969 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0091 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4758 0.8237 5 6 -0.4896 -0.6924 -1.1996 6 1 -1.5796 -0.6920 -1.1998 7 6 0.0205 0.0290 -2.4487 8 6 -0.4900 -0.6918 -3.6980 9 6 0.0196 -2.1344 -3.6985 10 1 1.1096 -2.1348 -3.6986 11 7 -0.4696 -2.8248 -4.8944 12 6 0.2066 -3.8818 -5.3864 13 8 1.2222 -4.2625 -4.8375 14 6 -0.2869 -4.5783 -6.5940 15 6 0.4131 -5.6726 -7.1025 16 7 -0.0269 -6.2949 -8.1795 17 6 -1.1381 -5.8780 -8.7806 18 6 -1.6330 -6.5757 -9.9887 19 6 -1.7584 -7.9189 -10.1686 20 6 -1.4114 -8.9798 -9.1562 21 8 -1.7615 -8.5228 -7.8483 22 14 -2.3550 -10.5391 -9.5424 23 8 -2.2450 -8.1378 -11.3969 24 6 -2.4391 -6.9795 -12.0462 25 6 -2.0846 -5.9625 -11.2442 26 6 -1.8400 -4.7792 -8.2691 27 7 -1.4030 -4.1637 -7.1924 28 6 -0.4905 -2.8558 -2.4494 29 6 0.0204 -2.1348 -1.1997 30 1 1.1104 0.0290 -2.4487 31 1 -0.3429 1.0567 -2.4486 32 1 -0.1270 -0.1776 -4.5880 33 1 -1.5799 -0.6914 -3.6979 34 1 -1.2802 -2.5212 -5.3323 35 1 1.3155 -6.0103 -6.6147 36 1 -0.3413 -9.1834 -9.1955 37 1 -2.7012 -8.3219 -7.7403 38 1 -2.0219 -11.5931 -8.5507 39 1 -3.8147 -10.2673 -9.5233 40 1 -2.8197 -6.8811 -13.0521 41 1 -2.1241 -4.9082 -11.4753 42 1 -2.7423 -4.4404 -8.7562 43 1 -1.5805 -2.8555 -2.4491 44 1 -0.1271 -3.8835 -2.4494 45 1 -0.3430 -2.6488 -0.3098 46 1 1.1103 -2.1349 -1.1997 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:36 Heat of formation + Delta-G solvation = 79.581477 kcal Electronic energy + Delta-G solvation = -30000.370398 eV Core-core repulsion = 25782.797175 eV Total energy + Delta-G solvation = -4217.573223 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.160 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.61846 -42.38025 -41.34185 -40.25137 -38.31098 -37.46261 -35.92968 -34.60134 -34.34941 -32.31502 -32.03696 -31.48567 -29.48422 -27.47908 -25.90287 -25.76342 -24.22288 -23.69258 -22.67763 -22.02622 -21.56234 -21.31466 -19.52287 -19.30165 -18.85304 -18.47943 -18.30601 -17.83427 -17.51591 -17.45249 -17.16266 -16.95709 -16.66026 -16.32413 -15.92331 -15.81265 -15.60789 -15.16759 -15.10927 -14.87186 -14.44754 -14.21202 -14.03349 -13.82502 -13.70935 -13.55371 -13.39134 -13.04981 -12.98775 -12.89378 -12.55680 -12.50463 -12.28586 -12.22606 -11.71852 -11.67363 -11.48756 -11.39409 -10.94608 -10.41519 -10.34108 -10.16547 -9.48426 -4.98293 -1.01193 -0.15497 0.52225 1.13211 1.24505 1.51452 1.53952 1.57866 1.70090 1.83377 1.88985 2.53519 2.69714 2.81293 3.06911 3.08301 3.18016 3.23433 3.51432 3.58384 3.62136 3.67768 3.72208 3.83837 3.89501 3.94218 4.08266 4.13068 4.18482 4.30747 4.33418 4.34320 4.47159 4.53029 4.55446 4.62243 4.64341 4.68163 4.84409 4.93004 4.95780 5.03794 5.05402 5.07097 5.15464 5.20017 5.34347 5.38309 5.82750 5.95221 6.20285 6.23683 6.47969 6.89349 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.022721 B = 0.002255 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.059706 B =12415.223815 C =13056.787386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.443 0.557 3 H 0.452 0.548 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.136 4.136 8 C -0.125 4.125 9 C 0.130 3.870 10 H 0.076 0.924 11 N -0.698 5.698 12 C 0.581 3.419 13 O -0.558 6.558 14 C 0.001 3.999 15 C 0.110 3.890 16 N -0.440 5.440 17 C 0.188 3.812 18 C -0.158 4.158 19 C -0.003 4.003 20 C -0.036 4.036 21 O -0.526 6.526 22 Si 0.783 3.217 23 O -0.173 6.173 24 C -0.013 4.013 25 C -0.204 4.204 26 C 0.068 3.932 27 N -0.404 5.404 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.179 0.821 36 H 0.139 0.861 37 H 0.383 0.617 38 H -0.289 1.289 39 H -0.285 1.285 40 H 0.246 0.754 41 H 0.178 0.822 42 H 0.205 0.795 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 26.832 26.858 37.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.273 0.727 3 H 0.283 0.717 4 H 0.282 0.718 5 C -0.053 4.053 6 H 0.175 0.825 7 C -0.174 4.174 8 C -0.164 4.164 9 C 0.027 3.973 10 H 0.094 0.906 11 N -0.349 5.349 12 C 0.365 3.635 13 O -0.436 6.436 14 C -0.139 4.139 15 C -0.050 4.050 16 N -0.154 5.154 17 C 0.047 3.953 18 C -0.161 4.161 19 C -0.056 4.056 20 C -0.145 4.145 21 O -0.333 6.333 22 Si 0.685 3.315 23 O -0.069 6.069 24 C -0.078 4.078 25 C -0.223 4.223 26 C -0.096 4.096 27 N -0.120 5.120 28 C -0.172 4.172 29 C -0.175 4.175 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.256 0.744 35 H 0.196 0.804 36 H 0.156 0.844 37 H 0.231 0.769 38 H -0.215 1.215 39 H -0.211 1.211 40 H 0.262 0.738 41 H 0.195 0.805 42 H 0.222 0.778 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.125 0.875 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.411 25.552 27.402 37.469 hybrid contribution -0.501 0.575 0.183 0.784 sum -0.911 26.127 27.585 38.005 Atomic orbital electron populations 1.42229 1.22001 1.21081 1.16608 0.72722 0.71654 0.71849 1.22854 1.04869 0.92642 0.84966 0.82489 1.21973 1.03516 1.00879 0.91048 1.21739 1.02935 0.91698 1.00001 1.21439 0.99738 0.92760 0.83409 0.90604 1.45883 1.29051 1.30107 1.29846 1.17556 0.83031 0.80777 0.82137 1.90821 1.25656 1.66489 1.60655 1.22153 0.95048 0.97933 0.98739 1.23844 0.99457 0.90716 0.91019 1.68647 1.11915 1.27425 1.07393 1.20335 0.90250 0.92259 0.92448 1.19572 1.09485 0.92325 0.94729 1.23136 1.00755 0.95435 0.86248 1.24475 1.08185 1.01604 0.80195 1.86696 1.31302 1.87346 1.27946 0.93388 0.76587 0.73812 0.87670 1.83785 1.64268 1.35302 1.23547 1.24800 1.02452 0.80661 0.99902 1.23073 1.05926 1.01852 0.91450 1.24164 1.00853 0.92351 0.92268 1.68308 1.09806 1.26817 1.07093 1.21859 1.02200 0.99280 0.93849 1.21944 1.03283 0.93430 0.98848 0.88820 0.86309 0.91057 0.89028 0.74435 0.80445 0.84367 0.76851 1.21546 1.21130 0.73758 0.80478 0.77842 0.89943 0.93861 0.87457 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.21 4.15 -168.68 -0.70 46.51 16 2 H 0.44 -34.56 8.90 -89.69 -0.80 -35.35 16 3 H 0.45 -36.39 8.96 -89.70 -0.80 -37.19 16 4 H 0.45 -35.85 8.96 -89.70 -0.80 -36.66 16 5 C 0.05 -3.34 3.02 44.91 0.14 -3.21 16 6 H 0.16 -10.23 8.14 -2.39 -0.02 -10.25 16 7 C -0.14 7.58 5.43 30.59 0.17 7.74 16 8 C -0.13 5.41 5.39 30.59 0.16 5.57 16 9 C 0.13 -4.45 2.45 44.99 0.11 -4.34 16 10 H 0.08 -2.27 7.58 -2.39 -0.02 -2.28 16 11 N -0.70 17.73 5.07 -445.37 -2.26 15.48 16 12 C 0.58 -9.13 7.77 86.80 0.67 -8.45 16 13 O -0.56 5.48 15.99 -3.89 -0.06 5.42 16 14 C 0.00 -0.01 6.75 41.79 0.28 0.27 16 15 C 0.11 -1.04 10.76 84.98 0.91 -0.13 16 16 N -0.44 3.33 9.50 -183.25 -1.74 1.59 16 17 C 0.19 -2.11 5.54 42.00 0.23 -1.87 16 18 C -0.16 1.88 5.91 -18.93 -0.11 1.77 16 19 C 0.00 0.04 6.29 25.19 0.16 0.20 16 20 C -0.04 0.43 2.76 71.23 0.20 0.62 16 21 O -0.53 5.44 10.94 -148.98 -1.63 3.81 16 22 Si 0.78 -9.94 32.26 68.60 2.21 -7.73 16 23 O -0.17 2.29 9.18 2.24 0.02 2.31 16 24 C -0.01 0.22 12.04 66.92 0.81 1.03 16 25 C -0.20 3.34 11.10 23.62 0.26 3.60 16 26 C 0.07 -1.07 10.93 85.18 0.93 -0.14 16 27 N -0.40 6.31 9.69 -183.51 -1.78 4.53 16 28 C -0.13 5.05 5.49 30.61 0.17 5.22 16 29 C -0.14 7.17 5.43 30.61 0.17 7.33 16 30 H 0.09 -5.16 8.14 -2.39 -0.02 -5.18 16 31 H 0.12 -7.03 8.14 -2.38 -0.02 -7.05 16 32 H 0.07 -2.71 8.14 -2.39 -0.02 -2.73 16 33 H 0.09 -4.07 8.14 -2.39 -0.02 -4.09 16 34 H 0.42 -11.48 7.94 -92.70 -0.74 -12.22 16 35 H 0.18 -1.80 7.63 -2.91 -0.02 -1.82 16 36 H 0.14 -1.65 7.96 -2.39 -0.02 -1.67 16 37 H 0.38 -6.01 8.70 -74.05 -0.64 -6.66 16 38 H -0.29 1.74 7.11 99.48 0.71 2.44 16 39 H -0.29 2.31 7.11 99.48 0.71 3.02 16 40 H 0.25 -6.24 8.06 -2.91 -0.02 -6.27 16 41 H 0.18 -3.73 8.06 -2.91 -0.02 -3.75 16 42 H 0.20 -4.50 8.06 -2.91 -0.02 -4.52 16 43 H 0.08 -3.21 8.14 -2.39 -0.02 -3.23 16 44 H 0.04 -1.19 8.14 -2.39 -0.02 -1.21 16 45 H 0.11 -5.84 8.14 -2.39 -0.02 -5.86 16 46 H 0.09 -4.67 8.14 -2.39 -0.02 -4.69 16 Total: 1.00 -96.73 382.17 -3.35 -100.08 By element: Atomic # 1 Polarization: -184.54 SS G_CDS: -2.68 Total: -187.22 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.26 Total: 15.21 kcal Atomic # 7 Polarization: 74.59 SS G_CDS: -6.48 Total: 68.11 kcal Atomic # 8 Polarization: 13.21 SS G_CDS: -1.67 Total: 11.54 kcal Atomic # 14 Polarization: -9.94 SS G_CDS: 2.21 Total: -7.73 kcal Total: -96.73 -3.35 -100.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.663 kcal (2) G-P(sol) polarization free energy of solvation -96.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds