Wall clock time and date at job start Mon Mar 8 2021 08:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00905 * 1 3 3 H 1.00898 * 109.47202 * 1 2 4 4 H 1.00901 * 109.47054 * 239.99200 * 1 2 3 5 5 C 1.46904 * 109.47029 * 119.99774 * 1 2 3 6 6 H 1.08994 * 109.47005 * 180.02562 * 5 1 2 7 7 C 1.53002 * 109.47031 * 300.00027 * 5 1 2 8 8 C 1.52994 * 109.47235 * 180.02562 * 7 5 1 9 9 C 1.52999 * 109.47309 * 299.99929 * 8 7 5 10 10 H 1.09004 * 109.47276 * 300.00033 * 9 8 7 11 11 N 1.46503 * 109.47304 * 179.97438 * 9 8 7 12 12 C 1.34779 * 119.99621 * 154.99990 * 11 9 8 13 13 O 1.21576 * 120.00309 * 0.02562 * 12 11 9 14 14 C 1.47608 * 119.99400 * 179.97438 * 12 11 9 15 15 C 1.40132 * 120.85417 * 359.72750 * 14 12 11 16 16 N 1.31920 * 119.02654 * 179.71053 * 15 14 12 17 17 C 1.32829 * 120.88355 * 0.57557 * 16 15 14 18 18 C 1.47939 * 119.06251 * 179.72231 * 17 16 15 19 19 C 1.36131 * 127.15716 * 226.78570 * 18 17 16 20 20 C 1.50701 * 125.78577 * 359.97438 * 19 18 17 21 21 O 1.42904 * 109.46970 * 37.23836 * 20 19 18 22 22 Si 1.86301 * 109.47199 * 157.23016 * 20 19 18 23 23 O 1.33856 * 108.42893 * 179.97438 * 19 18 17 24 24 C 1.34186 * 110.82672 * 0.02562 * 23 19 18 25 25 C 1.34266 * 109.06697 * 359.70502 * 24 23 19 26 26 N 1.32834 * 121.87914 * 359.69493 * 17 16 15 27 27 C 1.31914 * 120.87994 * 0.02562 * 26 17 16 28 28 C 1.53002 * 109.46914 * 59.99874 * 9 8 7 29 29 C 1.52994 * 109.47235 * 300.00171 * 28 9 8 30 30 H 1.08995 * 109.47273 * 300.00507 * 7 5 1 31 31 H 1.09004 * 109.47019 * 60.00245 * 7 5 1 32 32 H 1.08994 * 109.46965 * 60.00092 * 8 7 5 33 33 H 1.09006 * 109.47045 * 180.02562 * 8 7 5 34 34 H 0.96992 * 119.99901 * 335.00249 * 11 9 8 35 35 H 1.07996 * 120.48583 * 359.97438 * 15 14 12 36 36 H 1.08994 * 109.47712 * 277.23447 * 20 19 18 37 37 H 0.96696 * 114.00198 * 59.99392 * 21 20 19 38 38 H 1.48505 * 109.99786 * 58.68611 * 22 20 19 39 39 H 1.48495 * 110.00347 * 179.97438 * 22 20 19 40 40 H 1.08010 * 125.46633 * 180.02562 * 24 23 19 41 41 H 1.08001 * 127.00950 * 180.27045 * 25 24 23 42 42 H 1.07999 * 120.48237 * 179.97438 * 27 26 17 43 43 H 1.08999 * 109.47064 * 180.02562 * 28 9 8 44 44 H 1.09004 * 109.47019 * 60.00002 * 28 9 8 45 45 H 1.09004 * 109.47429 * 300.00142 * 29 28 9 46 46 H 1.09006 * 109.47505 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0091 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4758 0.8238 5 6 -0.4897 -0.6925 -1.1995 6 1 -1.5796 -0.6921 -1.1997 7 6 0.0204 0.0289 -2.4487 8 6 -0.4901 -0.6919 -3.6980 9 6 0.0194 -2.1346 -3.6984 10 1 1.1094 -2.1350 -3.6986 11 7 -0.4699 -2.8250 -4.8944 12 6 0.2063 -3.8820 -5.3863 13 8 1.2220 -4.2628 -4.8373 14 6 -0.2871 -4.5779 -6.5909 15 6 -1.4593 -4.1582 -7.2339 16 7 -1.8643 -4.8027 -8.3113 17 6 -1.1833 -5.8424 -8.7801 18 6 -1.6774 -6.5395 -9.9878 19 6 -1.8060 -7.8829 -10.1670 20 6 -1.4640 -8.9439 -9.1529 21 8 -1.8160 -8.4850 -7.8461 22 14 -2.4107 -10.5011 -9.5400 23 8 -2.2877 -8.1016 -11.3966 24 6 -2.4843 -6.9433 -12.0449 25 6 -2.1369 -5.9260 -11.2405 26 7 -0.0711 -6.2737 -8.1958 27 6 0.4016 -5.6789 -7.1174 28 6 -0.4906 -2.8559 -2.4492 29 6 0.0198 -2.1351 -1.2000 30 1 -0.3429 1.0565 -2.4486 31 1 1.1104 0.0288 -2.4487 32 1 -1.5800 -0.6915 -3.6978 33 1 -0.1263 -0.1782 -4.5879 34 1 -1.2804 -2.5213 -5.3321 35 1 -2.0206 -3.3168 -6.8554 36 1 -0.3944 -9.1504 -9.1896 37 1 -2.7554 -8.2815 -7.7406 38 1 -2.0774 -10.9710 -10.9087 39 1 -2.0817 -11.5555 -8.5475 40 1 -2.8662 -6.8450 -13.0504 41 1 -2.1834 -4.8714 -11.4691 42 1 1.3062 -6.0353 -6.6472 43 1 -0.1273 -3.8836 -2.4493 44 1 -1.5807 -2.8555 -2.4490 45 1 1.1098 -2.1355 -1.2001 46 1 -0.3439 -2.6488 -0.3099 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:20:12 Heat of formation + Delta-G solvation = 81.600585 kcal Electronic energy + Delta-G solvation = -30007.037122 eV Core-core repulsion = 25789.551453 eV Total energy + Delta-G solvation = -4217.485668 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.160 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.67457 -42.31838 -41.30822 -40.23227 -38.16690 -37.42511 -35.28936 -34.92423 -34.29353 -32.64932 -31.99417 -31.58790 -29.39863 -27.44251 -25.85597 -25.72224 -24.18682 -23.62260 -22.74338 -22.04314 -21.51529 -21.35996 -19.47689 -19.25679 -18.88741 -18.43383 -18.27329 -17.80181 -17.52074 -17.45206 -17.13758 -17.06951 -16.51019 -16.02677 -15.88128 -15.78127 -15.61023 -15.11648 -14.98243 -14.67351 -14.54944 -14.23930 -14.16169 -14.07646 -13.66738 -13.53526 -13.35261 -12.93371 -12.91897 -12.83858 -12.47555 -12.26862 -12.23939 -12.14845 -11.67688 -11.49424 -11.45819 -11.18946 -10.81590 -10.52046 -10.44114 -10.18638 -9.57441 -5.07901 -0.95692 -0.07624 0.48176 1.12821 1.24780 1.49415 1.57234 1.66492 1.78459 1.88671 1.91690 2.52967 2.59789 3.02751 3.11624 3.16687 3.23534 3.26843 3.49094 3.58226 3.61499 3.71439 3.75997 3.83498 3.92158 3.96434 4.03310 4.12714 4.20995 4.24015 4.37853 4.45016 4.48948 4.50894 4.58359 4.63083 4.64279 4.72858 4.88559 4.89886 4.99910 5.03897 5.07814 5.10179 5.19554 5.24949 5.28514 5.42631 5.70911 5.92306 6.27302 6.43167 6.80788 6.96606 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002256 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.455123 B =12408.752244 C =13052.680753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.442 0.558 3 H 0.451 0.549 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.160 0.840 7 C -0.138 4.138 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.708 5.708 12 C 0.579 3.421 13 O -0.566 6.566 14 C -0.256 4.256 15 C 0.197 3.803 16 N -0.521 5.521 17 C 0.417 3.583 18 C -0.146 4.146 19 C 0.002 3.998 20 C -0.029 4.029 21 O -0.532 6.532 22 Si 0.793 3.207 23 O -0.177 6.177 24 C -0.015 4.015 25 C -0.195 4.195 26 N -0.519 5.519 27 C 0.200 3.800 28 C -0.133 4.133 29 C -0.138 4.138 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.216 0.784 36 H 0.126 0.874 37 H 0.391 0.609 38 H -0.287 1.287 39 H -0.282 1.282 40 H 0.247 0.753 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 28.851 31.098 42.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.272 0.728 3 H 0.283 0.717 4 H 0.281 0.719 5 C -0.053 4.053 6 H 0.177 0.823 7 C -0.176 4.176 8 C -0.164 4.164 9 C 0.030 3.970 10 H 0.089 0.911 11 N -0.360 5.360 12 C 0.365 3.635 13 O -0.446 6.446 14 C -0.264 4.264 15 C 0.029 3.971 16 N -0.234 5.234 17 C 0.154 3.846 18 C -0.149 4.149 19 C -0.051 4.051 20 C -0.138 4.138 21 O -0.339 6.339 22 Si 0.696 3.304 23 O -0.074 6.074 24 C -0.080 4.080 25 C -0.214 4.214 26 N -0.232 5.232 27 C 0.033 3.967 28 C -0.172 4.172 29 C -0.177 4.177 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.233 0.767 36 H 0.143 0.857 37 H 0.240 0.760 38 H -0.214 1.214 39 H -0.209 1.209 40 H 0.263 0.737 41 H 0.186 0.814 42 H 0.194 0.806 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.985 26.822 30.257 40.483 hybrid contribution 1.094 0.662 0.058 1.280 sum -0.891 27.484 30.315 40.929 Atomic orbital electron populations 1.42253 1.21966 1.21105 1.16739 0.72811 0.71677 0.71885 1.22879 1.04945 0.92593 0.84902 0.82280 1.21980 1.03371 1.00944 0.91319 1.21757 1.03219 0.91605 0.99833 1.21358 0.99578 0.92679 0.83433 0.91054 1.45836 1.29167 1.30624 1.30341 1.17646 0.82987 0.80475 0.82441 1.90820 1.26097 1.66451 1.61247 1.21785 1.01201 1.02079 1.01309 1.24048 0.90161 0.95655 0.87279 1.68541 1.32689 1.08433 1.13775 1.20513 0.85910 0.87319 0.90869 1.19227 1.09623 0.92036 0.94045 1.23232 1.00521 0.95275 0.86088 1.24569 1.05899 1.02146 0.81164 1.86565 1.32309 1.88614 1.26389 0.93448 0.87873 0.72352 0.76760 1.83799 1.64536 1.35375 1.23662 1.24732 1.02919 0.80462 0.99911 1.22964 1.05306 1.01455 0.91705 1.68561 1.13390 1.30828 1.10415 1.23586 0.97028 0.88097 0.87984 1.21854 1.02458 0.99174 0.93731 1.21941 1.03105 0.93508 0.99120 0.86400 0.89157 0.88442 0.90838 0.74684 0.76727 0.85664 0.75969 1.21398 1.20868 0.73681 0.81438 0.80622 0.93968 0.89422 0.89499 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.01 4.16 -168.68 -0.70 47.31 16 2 H 0.44 -34.86 8.90 -89.69 -0.80 -35.66 16 3 H 0.45 -36.85 8.96 -89.70 -0.80 -37.66 16 4 H 0.45 -36.28 8.96 -89.69 -0.80 -37.08 16 5 C 0.05 -3.44 3.02 44.91 0.14 -3.30 16 6 H 0.16 -10.73 8.14 -2.39 -0.02 -10.75 16 7 C -0.14 7.97 5.43 30.59 0.17 8.14 16 8 C -0.13 5.89 5.39 30.59 0.16 6.05 16 9 C 0.13 -5.05 2.45 44.99 0.11 -4.94 16 10 H 0.07 -2.31 7.58 -2.39 -0.02 -2.32 16 11 N -0.71 22.26 5.03 -445.62 -2.24 20.01 16 12 C 0.58 -11.71 7.74 86.72 0.67 -11.04 16 13 O -0.57 6.86 16.10 -3.96 -0.06 6.80 16 14 C -0.26 4.42 5.91 -19.88 -0.12 4.30 16 15 C 0.20 -3.98 10.80 85.14 0.92 -3.06 16 16 N -0.52 6.51 10.34 -188.23 -1.95 4.56 16 17 C 0.42 -3.33 6.38 137.28 0.88 -2.46 16 18 C -0.15 1.13 6.05 -18.94 -0.11 1.01 16 19 C 0.00 -0.02 6.29 25.20 0.16 0.14 16 20 C -0.03 0.30 2.73 71.24 0.19 0.49 16 21 O -0.53 5.99 10.94 -148.98 -1.63 4.36 16 22 Si 0.79 -9.53 32.26 68.60 2.21 -7.31 16 23 O -0.18 1.69 9.18 2.88 0.03 1.72 16 24 C -0.01 0.20 12.04 66.91 0.81 1.01 16 25 C -0.19 2.18 11.15 23.62 0.26 2.45 16 26 N -0.52 3.39 9.34 -188.23 -1.76 1.63 16 27 C 0.20 -2.13 10.87 85.14 0.93 -1.21 16 28 C -0.13 5.46 5.49 30.59 0.17 5.63 16 29 C -0.14 7.49 5.43 30.59 0.17 7.66 16 30 H 0.12 -7.19 8.14 -2.39 -0.02 -7.21 16 31 H 0.09 -5.10 8.14 -2.39 -0.02 -5.12 16 32 H 0.10 -4.79 8.14 -2.39 -0.02 -4.81 16 33 H 0.07 -3.08 8.14 -2.38 -0.02 -3.10 16 34 H 0.42 -15.36 6.72 -92.71 -0.62 -15.98 16 35 H 0.22 -6.78 6.52 -2.91 -0.02 -6.80 16 36 H 0.13 -1.06 7.96 -2.39 -0.02 -1.08 16 37 H 0.39 -7.20 8.70 -74.06 -0.64 -7.84 16 38 H -0.29 1.54 7.11 99.48 0.71 2.25 16 39 H -0.28 1.75 7.11 99.48 0.71 2.45 16 40 H 0.25 -5.41 8.06 -2.91 -0.02 -5.44 16 41 H 0.17 -2.37 8.06 -2.91 -0.02 -2.40 16 42 H 0.18 -1.97 7.74 -2.91 -0.02 -2.00 16 43 H 0.04 -1.27 8.14 -2.39 -0.02 -1.29 16 44 H 0.09 -3.76 8.14 -2.39 -0.02 -3.78 16 45 H 0.09 -4.57 8.14 -2.39 -0.02 -4.58 16 46 H 0.11 -5.90 8.14 -2.38 -0.02 -5.92 16 Total: 1.00 -102.98 380.19 -3.17 -106.15 By element: Atomic # 1 Polarization: -193.55 SS G_CDS: -2.56 Total: -196.11 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.49 Total: 10.87 kcal Atomic # 7 Polarization: 80.16 SS G_CDS: -6.65 Total: 73.51 kcal Atomic # 8 Polarization: 14.55 SS G_CDS: -1.67 Total: 12.88 kcal Atomic # 14 Polarization: -9.53 SS G_CDS: 2.21 Total: -7.31 kcal Total: -102.98 -3.17 -106.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.751 kcal (2) G-P(sol) polarization free energy of solvation -102.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds