Wall clock time and date at job start Mon Mar 8 2021 08:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00905 * 109.47393 * 1 2 4 4 H 1.00900 * 109.47462 * 240.00349 * 1 2 3 5 5 C 1.46898 * 109.47901 * 119.99856 * 1 2 3 6 6 H 1.08998 * 109.47563 * 179.97438 * 5 1 2 7 7 C 1.53001 * 109.47164 * 300.00539 * 5 1 2 8 8 C 1.53001 * 109.47225 * 179.97438 * 7 5 1 9 9 C 1.53002 * 109.46761 * 299.99472 * 8 7 5 10 10 H 1.08998 * 109.47241 * 300.00142 * 9 8 7 11 11 N 1.46500 * 109.46817 * 180.02562 * 9 8 7 12 12 C 1.34782 * 119.99940 * 85.00546 * 11 9 8 13 13 O 1.21587 * 119.99852 * 359.97438 * 12 11 9 14 14 C 1.47610 * 119.99676 * 180.02562 * 12 11 9 15 15 C 1.40265 * 120.45188 * 179.97438 * 14 12 11 16 16 C 1.37958 * 118.39464 * 180.02562 * 15 14 12 17 17 C 1.39583 * 119.22036 * 359.97438 * 16 15 14 18 18 C 1.48068 * 119.57606 * 179.97438 * 17 16 15 19 19 C 1.36062 * 127.14385 * 185.49893 * 18 17 16 20 20 C 1.50700 * 125.77851 * 0.03677 * 19 18 17 21 21 O 1.42901 * 109.46814 * 114.63280 * 20 19 18 22 22 Si 1.86306 * 109.47071 * 234.62859 * 20 19 18 23 23 O 1.33921 * 108.43131 * 179.77905 * 19 18 17 24 24 C 1.34182 * 110.81102 * 0.22373 * 23 19 18 25 25 C 1.34302 * 109.04385 * 0.02562 * 24 23 19 26 26 N 1.32863 * 120.84742 * 0.25861 * 17 16 15 27 27 C 1.31502 * 121.75882 * 359.47499 * 26 17 16 28 28 C 1.52996 * 109.46993 * 59.99999 * 9 8 7 29 29 C 1.52999 * 109.47604 * 299.99929 * 28 9 8 30 30 H 1.09003 * 109.46617 * 299.99292 * 7 5 1 31 31 H 1.08998 * 109.47326 * 59.99309 * 7 5 1 32 32 H 1.09003 * 109.47045 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47359 * 59.99542 * 8 7 5 34 34 H 0.96998 * 120.00320 * 264.99532 * 11 9 8 35 35 H 1.08002 * 120.79810 * 0.03931 * 15 14 12 36 36 H 1.07995 * 120.38839 * 179.97438 * 16 15 14 37 37 H 1.08996 * 109.47712 * 354.62924 * 20 19 18 38 38 H 0.96698 * 114.00054 * 59.99553 * 21 20 19 39 39 H 1.48504 * 109.99554 * 58.68419 * 22 20 19 40 40 H 1.48496 * 109.99884 * 180.02562 * 22 20 19 41 41 H 1.07999 * 125.48099 * 180.02562 * 24 23 19 42 42 H 1.07996 * 127.00153 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.66010 * 180.29480 * 27 26 17 44 44 H 1.09008 * 109.47127 * 59.99977 * 28 9 8 45 45 H 1.09000 * 109.47135 * 179.97438 * 28 9 8 46 46 H 1.08999 * 109.46812 * 180.02562 * 29 28 9 47 47 H 1.08998 * 109.46996 * 300.00081 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4898 -0.6924 -1.1994 6 1 -1.5798 -0.6928 -1.1991 7 6 0.0202 0.0287 -2.4487 8 6 -0.4895 -0.6928 -3.6979 9 6 0.0210 -2.1351 -3.6976 10 1 1.1110 -2.1348 -3.6974 11 7 -0.4665 -2.8259 -4.8940 12 6 0.2110 -2.7230 -6.0547 13 8 1.2264 -2.0565 -6.1087 14 6 -0.2806 -3.4185 -7.2603 15 6 0.4166 -3.3175 -8.4732 16 6 -0.0810 -3.9845 -9.5734 17 6 -1.2525 -4.7325 -9.4445 18 6 -1.7939 -5.4512 -10.6205 19 6 -2.9682 -6.1341 -10.6969 20 6 -3.9675 -6.2961 -9.5806 21 8 -5.1828 -5.6298 -9.9289 22 14 -4.3081 -8.1076 -9.3101 23 8 -3.0881 -6.6330 -11.9340 24 6 -2.0248 -6.3068 -12.6847 25 6 -1.1734 -5.5776 -11.9451 26 7 -1.8909 -4.8035 -8.2815 27 6 -1.4460 -4.1864 -7.2089 28 6 -0.4889 -2.8563 -2.4483 29 6 0.0206 -2.1348 -1.1991 30 1 -0.3432 1.0564 -2.4486 31 1 1.1101 0.0287 -2.4487 32 1 -0.1265 -0.1787 -4.5879 33 1 -1.5795 -0.6931 -3.6980 34 1 -1.2768 -3.3574 -4.8509 35 1 1.3213 -2.7319 -8.5439 36 1 0.4297 -3.9286 -10.5233 37 1 -3.5642 -5.8617 -8.6659 38 1 -5.5984 -5.9654 -10.7349 39 1 -3.0466 -8.8175 -8.9785 40 1 -5.2927 -8.2808 -8.2120 41 1 -1.8774 -6.5859 -13.7175 42 1 -0.2269 -5.1648 -12.2615 43 1 -1.9896 -4.2710 -6.2795 44 1 -1.5790 -2.8566 -2.4484 45 1 -0.1257 -3.8840 -2.4483 46 1 -0.3423 -2.6489 -0.3091 47 1 1.1106 -2.1344 -1.1989 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081500_17119696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:06 Heat of formation + Delta-G solvation = 64.128189 kcal Electronic energy + Delta-G solvation = -29731.817664 eV Core-core repulsion = 25579.000247 eV Total energy + Delta-G solvation = -4152.817417 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.60263 -41.93045 -41.11925 -40.08202 -37.92996 -37.44696 -35.15328 -34.43021 -33.82455 -32.10497 -32.03738 -31.40505 -29.32930 -26.99872 -25.72664 -24.79555 -24.21568 -23.52292 -22.65112 -21.73855 -21.49708 -21.27851 -19.41579 -19.06024 -18.48116 -18.30563 -18.15527 -17.86387 -17.45921 -17.18572 -16.87542 -16.75349 -16.33849 -16.13976 -15.86826 -15.68500 -15.34323 -15.08084 -14.89345 -14.68672 -14.50735 -14.18018 -14.15604 -14.07245 -13.69832 -13.48747 -13.40511 -13.37130 -12.93283 -12.86348 -12.51596 -12.28456 -12.28409 -11.71980 -11.60483 -11.55923 -11.43097 -11.17690 -10.92799 -10.51060 -10.32259 -10.08928 -9.30144 -5.05183 -0.89345 0.00543 0.58315 1.18994 1.24011 1.54357 1.56689 1.75943 1.80275 1.85348 1.93274 2.69243 2.78679 3.07800 3.22705 3.32698 3.43186 3.47554 3.54610 3.57101 3.60092 3.68391 3.74343 3.87816 3.92490 3.98970 4.08284 4.08452 4.19324 4.32718 4.33414 4.45624 4.48648 4.54090 4.54700 4.61211 4.67072 4.68655 4.72930 4.82614 4.88688 4.95669 5.03171 5.03649 5.05553 5.16799 5.20407 5.31845 5.35797 5.40494 5.98743 6.26096 6.55539 6.59129 6.95776 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002394 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.324534 B =11692.635902 C =12758.150300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.442 0.558 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.053 3.947 6 H 0.159 0.841 7 C -0.137 4.137 8 C -0.133 4.133 9 C 0.133 3.867 10 H 0.072 0.928 11 N -0.712 5.712 12 C 0.571 3.429 13 O -0.570 6.570 14 C -0.211 4.211 15 C -0.016 4.016 16 C -0.169 4.169 17 C 0.218 3.782 18 C -0.176 4.176 19 C 0.004 3.996 20 C -0.045 4.045 21 O -0.546 6.546 22 Si 0.775 3.225 23 O -0.173 6.173 24 C -0.017 4.017 25 C -0.211 4.211 26 N -0.513 5.513 27 C 0.150 3.850 28 C -0.126 4.126 29 C -0.137 4.137 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.413 0.587 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.396 0.604 39 H -0.295 1.295 40 H -0.270 1.270 41 H 0.247 0.753 42 H 0.176 0.824 43 H 0.196 0.804 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 16.077 32.536 36.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.172 4.172 9 C 0.029 3.971 10 H 0.090 0.910 11 N -0.364 5.364 12 C 0.358 3.642 13 O -0.450 6.450 14 C -0.216 4.216 15 C -0.042 4.042 16 C -0.188 4.188 17 C 0.084 3.916 18 C -0.178 4.178 19 C -0.048 4.048 20 C -0.154 4.154 21 O -0.354 6.354 22 Si 0.678 3.322 23 O -0.069 6.069 24 C -0.082 4.082 25 C -0.230 4.230 26 N -0.222 5.222 27 C -0.009 4.009 28 C -0.165 4.165 29 C -0.175 4.175 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.247 0.753 39 H -0.222 1.222 40 H -0.196 1.196 41 H 0.263 0.737 42 H 0.194 0.806 43 H 0.212 0.788 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.425 15.449 33.363 36.926 hybrid contribution 1.413 0.846 -0.583 1.747 sum 4.838 16.295 32.780 36.925 Atomic orbital electron populations 1.42239 1.21978 1.21100 1.16665 0.72763 0.71855 0.71664 1.22865 1.04899 0.93217 0.84336 0.82390 1.21937 1.03160 1.00692 0.91789 1.21852 1.02321 0.94349 0.98696 1.21349 0.99568 0.92241 0.83924 0.91011 1.45906 1.29216 1.52183 1.09073 1.17939 0.82938 0.79751 0.83554 1.90798 1.26189 1.42546 1.85478 1.21039 0.99911 1.04858 0.95775 1.21831 0.98151 0.93430 0.90748 1.22155 0.96855 0.98571 1.01241 1.19306 0.90637 0.91635 0.90024 1.19989 0.97546 1.05763 0.94525 1.23428 0.98052 0.97379 0.85960 1.25397 0.83039 1.11876 0.95052 1.86518 1.35840 1.63403 1.49589 0.93736 0.79592 0.72022 0.86845 1.83792 1.42089 1.60810 1.20228 1.24781 0.84783 1.00019 0.98661 1.23110 1.03304 1.05243 0.91321 1.67370 1.32714 1.22605 0.99534 1.23352 0.91448 0.89059 0.97078 1.21758 1.03083 0.99840 0.91810 1.21974 1.03427 0.92775 0.99351 0.87537 0.89360 0.93979 0.89692 0.74886 0.82979 0.82264 0.82496 0.75346 1.22192 1.19613 0.73697 0.80646 0.78777 0.88719 0.90939 0.86387 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.42 4.15 -168.68 -0.70 46.72 16 2 H 0.44 -34.59 8.90 -89.70 -0.80 -35.39 16 3 H 0.45 -35.95 8.96 -89.69 -0.80 -36.75 16 4 H 0.45 -36.48 8.96 -89.69 -0.80 -37.28 16 5 C 0.05 -3.38 3.03 44.92 0.14 -3.24 16 6 H 0.16 -10.41 8.14 -2.39 -0.02 -10.43 16 7 C -0.14 7.28 5.43 30.59 0.17 7.44 16 8 C -0.13 5.22 5.49 30.60 0.17 5.39 16 9 C 0.13 -4.77 2.45 44.99 0.11 -4.66 16 10 H 0.07 -2.20 7.57 -2.39 -0.02 -2.22 16 11 N -0.71 20.48 5.03 -445.62 -2.24 18.24 16 12 C 0.57 -10.40 7.74 86.72 0.67 -9.73 16 13 O -0.57 6.07 16.07 -3.99 -0.06 6.01 16 14 C -0.21 3.37 5.89 -19.97 -0.12 3.25 16 15 C -0.02 0.21 9.70 22.70 0.22 0.43 16 16 C -0.17 2.09 9.63 22.53 0.22 2.31 16 17 C 0.22 -1.98 6.75 41.92 0.28 -1.70 16 18 C -0.18 1.46 6.26 -18.93 -0.12 1.34 16 19 C 0.00 -0.04 5.60 25.18 0.14 0.10 16 20 C -0.04 0.46 2.92 71.24 0.21 0.67 16 21 O -0.55 5.76 12.88 -148.98 -1.92 3.84 16 22 Si 0.78 -9.44 32.88 68.60 2.26 -7.19 16 23 O -0.17 1.97 10.09 2.31 0.02 1.99 16 24 C -0.02 0.25 12.04 66.92 0.81 1.06 16 25 C -0.21 2.69 10.52 23.62 0.25 2.93 16 26 N -0.51 5.54 7.42 -183.85 -1.36 4.17 16 27 C 0.15 -2.63 10.70 85.09 0.91 -1.72 16 28 C -0.13 5.67 5.39 30.59 0.16 5.83 16 29 C -0.14 7.73 5.43 30.59 0.17 7.90 16 30 H 0.11 -5.84 8.14 -2.39 -0.02 -5.86 16 31 H 0.09 -4.56 8.14 -2.39 -0.02 -4.58 16 32 H 0.04 -1.20 8.14 -2.39 -0.02 -1.22 16 33 H 0.08 -3.45 8.14 -2.39 -0.02 -3.47 16 34 H 0.41 -13.84 6.65 -92.71 -0.62 -14.46 16 35 H 0.15 -2.17 7.73 -2.91 -0.02 -2.19 16 36 H 0.16 -2.58 7.25 -2.91 -0.02 -2.60 16 37 H 0.16 -1.41 5.02 -2.39 -0.01 -1.43 16 38 H 0.40 -7.21 8.70 -74.06 -0.64 -7.86 16 39 H -0.29 1.68 7.11 99.48 0.71 2.39 16 40 H -0.27 2.19 7.11 99.48 0.71 2.90 16 41 H 0.25 -5.69 8.06 -2.91 -0.02 -5.71 16 42 H 0.18 -3.08 7.60 -2.91 -0.02 -3.10 16 43 H 0.20 -5.24 6.40 -2.91 -0.02 -5.26 16 44 H 0.09 -4.42 8.14 -2.38 -0.02 -4.44 16 45 H 0.07 -2.89 8.14 -2.39 -0.02 -2.91 16 46 H 0.12 -7.04 8.14 -2.39 -0.02 -7.06 16 47 H 0.09 -5.08 8.14 -2.39 -0.02 -5.10 16 Total: 1.00 -100.44 382.80 -2.20 -102.64 By element: Atomic # 1 Polarization: -191.46 SS G_CDS: -2.57 Total: -194.03 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 4.38 Total: 17.61 kcal Atomic # 7 Polarization: 73.43 SS G_CDS: -4.31 Total: 69.13 kcal Atomic # 8 Polarization: 13.80 SS G_CDS: -1.96 Total: 11.84 kcal Atomic # 14 Polarization: -9.44 SS G_CDS: 2.26 Total: -7.19 kcal Total: -100.44 -2.20 -102.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081500_17119696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.765 kcal (2) G-P(sol) polarization free energy of solvation -100.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds