Wall clock time and date at job start Mon Mar 8 2021 08:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00900 * 109.46472 * 1 2 4 4 H 1.00901 * 109.46717 * 240.00687 * 1 2 3 5 5 C 1.46888 * 109.47409 * 120.00164 * 1 2 3 6 6 H 1.09000 * 112.91082 * 288.75231 * 5 1 2 7 7 C 1.53786 * 113.61561 * 60.00356 * 5 1 2 8 8 C 1.53781 * 87.17350 * 89.15683 * 7 5 1 9 9 H 1.08997 * 113.61223 * 270.84552 * 8 7 5 10 10 C 1.50698 * 113.61342 * 140.02323 * 8 7 5 11 11 C 1.37998 * 119.93559 * 120.00157 * 10 8 7 12 12 C 1.39373 * 119.87093 * 179.97438 * 11 10 8 13 13 C 1.48379 * 120.11789 * 179.97438 * 12 11 10 14 14 C 1.34569 * 122.76777 * 130.00337 * 13 12 11 15 15 C 1.50702 * 125.22918 * 359.97438 * 14 13 12 16 16 O 1.42894 * 109.46992 * 330.00549 * 15 14 13 17 17 Si 1.86302 * 109.46913 * 210.00035 * 15 14 13 18 18 S 1.75857 * 109.53971 * 179.97438 * 14 13 12 19 19 C 1.75811 * 91.14872 * 359.97438 * 18 14 13 20 20 C 1.33048 * 109.93415 * 359.73005 * 19 18 14 21 21 C 1.39334 * 119.76068 * 0.02562 * 12 11 10 22 22 C 1.38035 * 119.87460 * 359.97438 * 21 12 11 23 23 C 1.38310 * 120.12037 * 359.72823 * 22 21 12 24 24 C 1.53782 * 87.08260 * 25.39213 * 8 7 5 25 25 H 1.09002 * 113.61357 * 334.56600 * 7 5 1 26 26 H 1.09002 * 113.61608 * 203.74762 * 7 5 1 27 27 H 1.07998 * 120.06412 * 359.97438 * 11 10 8 28 28 H 1.09001 * 109.46604 * 90.00168 * 15 14 13 29 29 H 0.96708 * 113.99991 * 299.99473 * 16 15 14 30 30 H 1.48503 * 109.99423 * 180.02562 * 17 15 14 31 31 H 1.48495 * 110.00188 * 301.31912 * 17 15 14 32 32 H 1.08011 * 125.02963 * 180.02562 * 19 18 14 33 33 H 1.08003 * 122.53974 * 180.26804 * 20 19 18 34 34 H 1.07997 * 120.06366 * 179.97438 * 21 12 11 35 35 H 1.07997 * 119.93681 * 180.02562 * 22 21 12 36 36 H 1.07997 * 119.87467 * 180.27346 * 23 22 21 37 37 H 1.08997 * 113.61668 * 89.11298 * 24 8 7 38 38 H 1.08994 * 113.61387 * 220.02033 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4897 -0.6925 -1.1993 6 1 -0.3269 -0.1230 -2.1143 7 6 -0.0309 -2.1571 -1.2955 8 6 -1.2963 -2.5259 -0.5033 9 1 -1.1539 -2.5142 0.5773 10 6 -1.9691 -3.7830 -0.9913 11 6 -2.1234 -4.8570 -0.1387 12 6 -2.7463 -6.0187 -0.5913 13 6 -2.9146 -7.1770 0.3207 14 6 -4.0925 -7.8050 0.4908 15 6 -5.3812 -7.4372 -0.1986 16 8 -5.3933 -6.0341 -0.4687 17 14 -6.8201 -7.8701 0.9029 18 16 -3.8970 -9.1207 1.6411 19 6 -2.1908 -8.7439 1.8358 20 6 -1.8640 -7.7090 1.0661 21 6 -3.2095 -6.0889 -1.9035 22 6 -3.0498 -5.0085 -2.7477 23 6 -2.4364 -3.8559 -2.2914 24 6 -1.9234 -1.2351 -1.0560 25 1 0.8954 -2.3607 -0.7582 26 1 -0.0241 -2.5466 -2.3135 27 1 -1.7622 -4.7974 0.8774 28 1 -5.4621 -7.9883 -1.1355 29 1 -5.3244 -5.4808 0.3214 30 1 -8.0969 -7.5129 0.2341 31 1 -6.8006 -9.3213 1.2171 32 1 -1.5078 -9.2769 2.4809 33 1 -0.8616 -7.3091 1.0252 34 1 -3.6925 -6.9868 -2.2595 35 1 -3.4088 -5.0616 -3.7649 36 1 -2.3175 -3.0113 -2.9540 37 1 -2.4346 -1.3712 -2.0090 38 1 -2.5248 -0.6943 -0.3253 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:34:16 Heat of formation + Delta-G solvation = 144.770792 kcal Electronic energy + Delta-G solvation = -20664.613801 eV Core-core repulsion = 17683.737000 eV Total energy + Delta-G solvation = -2980.876801 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87485 -40.56030 -38.66686 -37.36739 -35.72889 -32.27395 -31.90165 -30.86566 -27.03930 -26.81317 -26.09945 -24.17746 -23.38644 -22.40766 -20.67657 -19.78252 -19.09981 -18.59339 -18.46569 -17.65604 -17.32924 -16.84635 -16.34966 -16.19322 -15.92957 -15.67394 -15.24041 -14.92709 -14.59308 -14.31260 -14.03567 -13.86300 -13.79334 -13.60980 -13.44657 -12.81861 -12.76541 -12.60913 -12.43275 -12.18491 -11.73923 -11.62474 -11.59456 -11.29386 -10.83930 -9.99017 -9.61154 -9.52354 -9.05892 -5.18240 -0.25238 0.46121 0.48119 0.54861 0.87666 1.19392 1.50360 1.63025 1.67828 1.86336 2.79781 2.98000 3.15762 3.36075 3.55294 3.63920 3.77607 3.84402 3.89730 4.08432 4.14166 4.22231 4.24806 4.32492 4.38252 4.49970 4.52832 4.58193 4.62579 4.70921 4.76102 4.88201 4.91839 4.99630 5.07829 5.10849 5.19310 5.25453 5.28597 5.39354 5.65129 5.70894 5.77878 6.15109 6.59634 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.004817 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.798645 B = 5810.910144 C = 6304.266291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 H 0.451 0.549 3 H 0.453 0.547 4 H 0.441 0.559 5 C 0.029 3.971 6 H 0.165 0.835 7 C -0.142 4.142 8 C -0.088 4.088 9 H 0.135 0.865 10 C -0.078 4.078 11 C -0.102 4.102 12 C -0.026 4.026 13 C -0.047 4.047 14 C -0.219 4.219 15 C -0.017 4.017 16 O -0.528 6.528 17 Si 0.728 3.272 18 S 0.079 5.921 19 C -0.204 4.204 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.144 4.144 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.140 0.860 28 H 0.110 0.890 29 H 0.389 0.611 30 H -0.280 1.280 31 H -0.277 1.277 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.830 29.300 3.317 33.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.009 5.009 2 H 0.283 0.717 3 H 0.285 0.715 4 H 0.272 0.728 5 C -0.077 4.077 6 H 0.182 0.818 7 C -0.180 4.180 8 C -0.106 4.106 9 H 0.152 0.848 10 C -0.078 4.078 11 C -0.120 4.120 12 C -0.029 4.029 13 C -0.060 4.060 14 C -0.336 4.336 15 C -0.130 4.130 16 O -0.335 6.335 17 Si 0.633 3.367 18 S 0.344 5.656 19 C -0.338 4.338 20 C -0.157 4.157 21 C -0.109 4.109 22 C -0.156 4.156 23 C -0.131 4.131 24 C -0.182 4.182 25 H 0.127 0.873 26 H 0.114 0.886 27 H 0.158 0.842 28 H 0.127 0.873 29 H 0.239 0.761 30 H -0.206 1.206 31 H -0.204 1.204 32 H 0.201 0.799 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.160 0.840 37 H 0.118 0.882 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.995 27.366 3.234 31.372 hybrid contribution 0.728 -0.355 -1.088 1.356 sum 15.723 27.011 2.146 31.328 Atomic orbital electron populations 1.41959 1.22047 1.20869 1.16043 0.71651 0.71466 0.72842 1.23719 0.97254 0.96271 0.90487 0.81756 1.23542 0.98620 0.92398 1.03396 1.22036 0.95866 0.90766 1.01968 0.84751 1.19679 0.99195 0.96060 0.92851 1.21235 0.98614 0.91760 1.00407 1.18282 0.99638 0.92974 0.91982 1.17871 0.91371 0.97793 0.98929 1.25120 1.00332 1.02432 1.05721 1.24193 0.98861 0.86639 1.03339 1.86555 1.96196 1.13650 1.37077 0.94137 0.75793 0.81863 0.84868 1.84877 1.07610 1.32573 1.40539 1.25841 0.98165 1.03214 1.06625 1.20332 1.00721 0.97282 0.97339 1.20982 0.97936 0.98322 0.93614 1.21180 1.00465 0.94322 0.99680 1.21215 0.98128 0.97424 0.96379 1.23632 0.94842 0.94861 1.04828 0.87283 0.88609 0.84214 0.87323 0.76127 1.20641 1.20363 0.79930 0.82061 0.89169 0.86879 0.84010 0.88199 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 46.85 4.51 -166.25 -0.75 46.10 16 2 H 0.45 -36.42 9.02 -89.69 -0.81 -37.23 16 3 H 0.45 -36.76 9.03 -89.69 -0.81 -37.57 16 4 H 0.44 -34.90 8.01 -89.69 -0.72 -35.61 16 5 C 0.03 -1.88 4.97 45.51 0.23 -1.66 16 6 H 0.16 -10.80 8.14 -2.39 -0.02 -10.82 16 7 C -0.14 7.74 7.34 31.12 0.23 7.97 16 8 C -0.09 4.41 3.63 -11.01 -0.04 4.37 16 9 H 0.13 -7.49 7.66 -2.39 -0.02 -7.51 16 10 C -0.08 2.73 5.28 -19.90 -0.11 2.63 16 11 C -0.10 2.99 9.28 22.49 0.21 3.20 16 12 C -0.03 0.56 4.31 -20.04 -0.09 0.48 16 13 C -0.05 0.86 5.33 -21.14 -0.11 0.74 16 14 C -0.22 3.49 5.67 24.85 0.14 3.63 16 15 C -0.02 0.27 2.15 71.24 0.15 0.42 16 16 O -0.53 9.72 9.35 -148.98 -1.39 8.33 16 17 Si 0.73 -10.73 31.42 68.60 2.16 -8.58 16 18 S 0.08 -1.13 21.14 -56.49 -1.19 -2.32 16 19 C -0.20 3.65 11.19 66.66 0.75 4.39 16 20 C -0.13 2.51 9.84 21.38 0.21 2.72 16 21 C -0.09 1.57 7.35 22.49 0.17 1.73 16 22 C -0.14 2.93 10.03 22.24 0.22 3.15 16 23 C -0.11 3.40 8.62 22.31 0.19 3.59 16 24 C -0.14 7.90 7.12 31.18 0.22 8.12 16 25 H 0.11 -6.24 8.14 -2.39 -0.02 -6.26 16 26 H 0.10 -4.54 7.73 -2.39 -0.02 -4.56 16 27 H 0.14 -4.69 8.05 -2.91 -0.02 -4.72 16 28 H 0.11 -1.51 7.79 -2.39 -0.02 -1.53 16 29 H 0.39 -9.85 8.68 -74.05 -0.64 -10.49 16 30 H -0.28 2.18 7.11 99.48 0.71 2.88 16 31 H -0.28 2.35 7.11 99.48 0.71 3.06 16 32 H 0.18 -3.92 8.06 -2.90 -0.02 -3.95 16 33 H 0.16 -3.93 8.06 -2.91 -0.02 -3.95 16 34 H 0.09 -1.17 7.41 -2.91 -0.02 -1.19 16 35 H 0.11 -2.31 8.06 -2.91 -0.02 -2.34 16 36 H 0.14 -5.04 6.64 -2.91 -0.02 -5.06 16 37 H 0.10 -4.82 6.30 -2.39 -0.02 -4.84 16 38 H 0.11 -6.35 8.14 -2.39 -0.02 -6.37 16 Total: 1.00 -88.39 317.66 -0.64 -89.03 By element: Atomic # 1 Polarization: -176.21 SS G_CDS: -1.83 Total: -178.04 kcal Atomic # 6 Polarization: 43.12 SS G_CDS: 2.37 Total: 45.49 kcal Atomic # 7 Polarization: 46.85 SS G_CDS: -0.75 Total: 46.10 kcal Atomic # 8 Polarization: 9.72 SS G_CDS: -1.39 Total: 8.33 kcal Atomic # 14 Polarization: -10.73 SS G_CDS: 2.16 Total: -8.58 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -1.19 Total: -2.32 kcal Total: -88.39 -0.64 -89.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.801 kcal (2) G-P(sol) polarization free energy of solvation -88.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds