Wall clock time and date at job start Mon Mar 8 2021 08:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00896 * 1 3 3 H 1.00895 * 109.47393 * 1 2 4 4 H 1.00895 * 109.47359 * 239.99235 * 1 2 3 5 5 C 1.46899 * 109.46913 * 119.99544 * 1 2 3 6 6 H 1.08998 * 109.47530 * 179.97438 * 5 1 2 7 7 C 1.53000 * 109.47424 * 299.99972 * 5 1 2 8 8 C 1.52994 * 109.47489 * 179.97438 * 7 5 1 9 9 C 1.53002 * 109.47549 * 300.00443 * 8 7 5 10 10 H 1.08998 * 109.46394 * 299.99808 * 9 8 7 11 11 N 1.46503 * 109.47251 * 179.97438 * 9 8 7 12 12 C 1.38542 * 119.99777 * 84.99869 * 11 9 8 13 13 C 1.39695 * 120.48107 * 0.02562 * 12 11 9 14 14 C 1.38205 * 118.53248 * 180.02562 * 13 12 11 15 15 N 1.32402 * 119.30815 * 359.97438 * 14 13 12 16 16 C 1.32707 * 120.91932 * 0.02562 * 15 14 13 17 17 C 1.48049 * 119.20127 * 179.97438 * 16 15 14 18 18 C 1.34566 * 122.86589 * 132.05700 * 17 16 15 19 19 C 1.50690 * 124.74638 * 359.96602 * 18 17 16 20 20 O 1.42906 * 109.47220 * 321.60825 * 19 18 17 21 21 Si 1.86298 * 109.47345 * 201.60926 * 19 18 17 22 22 S 1.70635 * 110.50811 * 179.70127 * 18 17 16 23 23 C 1.75733 * 91.70496 * 0.26527 * 22 18 17 24 24 C 1.33115 * 109.77899 * 359.97438 * 23 22 18 25 25 N 1.32675 * 121.59948 * 0.27630 * 16 15 14 26 26 C 1.53000 * 109.47087 * 59.99311 * 9 8 7 27 27 C 1.52997 * 109.47137 * 300.00646 * 26 9 8 28 28 H 1.08995 * 109.46976 * 299.99990 * 7 5 1 29 29 H 1.09006 * 109.46832 * 59.99605 * 7 5 1 30 30 H 1.08999 * 109.47215 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47024 * 60.00191 * 8 7 5 32 32 H 0.97002 * 119.99995 * 265.00086 * 11 9 8 33 33 H 1.08001 * 120.73504 * 0.04168 * 13 12 11 34 34 H 1.08001 * 120.34690 * 179.97438 * 14 13 12 35 35 H 1.09005 * 109.47315 * 81.60925 * 19 18 17 36 36 H 0.96700 * 113.99730 * 179.97438 * 20 19 18 37 37 H 1.48501 * 110.00173 * 59.99628 * 21 19 18 38 38 H 1.48499 * 110.00431 * 181.31910 * 21 19 18 39 39 H 1.08001 * 125.11635 * 179.97438 * 23 22 18 40 40 H 1.07999 * 123.13620 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.46832 * 60.00653 * 26 9 8 42 42 H 1.08995 * 109.46976 * 180.02562 * 26 9 8 43 43 H 1.09007 * 109.46561 * 180.02562 * 27 26 9 44 44 H 1.08999 * 109.47240 * 299.99344 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4757 0.8237 5 6 -0.4896 -0.6924 -1.1995 6 1 -1.5796 -0.6929 -1.1994 7 6 0.0204 0.0289 -2.4487 8 6 -0.4890 -0.6926 -3.6980 9 6 0.0214 -2.1350 -3.6978 10 1 1.1114 -2.1345 -3.6976 11 7 -0.4669 -2.8260 -4.8938 12 6 0.2286 -2.7203 -6.0873 13 6 1.3969 -1.9580 -6.1616 14 6 2.0583 -1.8799 -7.3725 15 7 1.5701 -2.5253 -8.4205 16 6 0.4580 -3.2426 -8.3222 17 6 -0.0544 -3.9484 -9.5184 18 6 -0.4338 -5.2393 -9.4980 19 6 -0.3905 -6.1281 -8.2819 20 8 0.7858 -5.8402 -7.5231 21 14 -0.3630 -7.9123 -8.8172 22 16 -0.9775 -5.7271 -11.0401 23 6 -0.6673 -4.1330 -11.7116 24 6 -0.1824 -3.3322 -10.7653 25 7 -0.2092 -3.3377 -7.1793 26 6 -0.4886 -2.8563 -2.4486 27 6 0.0209 -2.1347 -1.1994 28 1 -0.3430 1.0565 -2.4486 29 1 1.1104 0.0290 -2.4486 30 1 -0.1261 -0.1784 -4.5879 31 1 -1.5791 -0.6930 -3.6983 32 1 -1.2772 -3.3574 -4.8500 33 1 1.7751 -1.4414 -5.2918 34 1 2.9639 -1.2985 -7.4631 35 1 -1.2726 -5.9466 -7.6676 36 1 0.8791 -6.3763 -6.7237 37 1 0.8348 -8.1727 -9.6554 38 1 -0.3524 -8.7997 -7.6266 39 1 -0.8435 -3.8461 -12.7377 40 1 0.0835 -2.3008 -10.9439 41 1 -1.5786 -2.8567 -2.4489 42 1 -0.1246 -3.8836 -2.4483 43 1 -0.3421 -2.6490 -0.3094 44 1 1.1109 -2.1344 -1.1991 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17085348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:36:40 Heat of formation + Delta-G solvation = 141.304908 kcal Electronic energy + Delta-G solvation = -26797.136079 eV Core-core repulsion = 23153.218396 eV Total energy + Delta-G solvation = -3643.917683 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01906 -41.07243 -39.46054 -38.20502 -37.60643 -35.51451 -33.84421 -32.17028 -31.95523 -31.44372 -28.97426 -27.61430 -25.14473 -24.61676 -24.02002 -23.66061 -22.77991 -21.43978 -20.49888 -19.12121 -18.83943 -18.49815 -18.38318 -18.29949 -17.85557 -17.45824 -16.77859 -16.40685 -16.22413 -16.16309 -15.90564 -15.31850 -15.12684 -14.87457 -14.60892 -14.26418 -14.22522 -13.99999 -13.91696 -13.71680 -13.45843 -13.40804 -12.92893 -12.81406 -12.67486 -12.37533 -12.28772 -12.23028 -11.94439 -11.63330 -11.51690 -11.39034 -10.98626 -10.70290 -10.18313 -9.65952 -9.41708 -9.08797 -5.17091 -0.37123 0.18312 0.44784 0.47901 0.81265 1.12702 1.45784 1.53639 1.59632 1.81642 1.99357 2.94619 2.99108 3.10198 3.24130 3.33089 3.55546 3.60715 3.65527 3.68232 3.78897 3.87765 3.95255 4.10024 4.11425 4.27933 4.29168 4.33634 4.35268 4.47336 4.48033 4.50962 4.57641 4.60777 4.64774 4.69292 4.84824 4.93142 4.99178 5.04210 5.07855 5.16547 5.18844 5.24235 5.30091 5.37089 5.85330 6.21245 6.39886 6.58877 7.32933 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.003198 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.200157 B = 8752.283301 C = 9611.450617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.444 0.556 3 H 0.450 0.550 4 H 0.450 0.550 5 C 0.050 3.950 6 H 0.150 0.850 7 C -0.137 4.137 8 C -0.138 4.138 9 C 0.143 3.857 10 H 0.089 0.911 11 N -0.706 5.706 12 C 0.428 3.572 13 C -0.290 4.290 14 C 0.155 3.845 15 N -0.586 5.586 16 C 0.428 3.572 17 C -0.061 4.061 18 C -0.194 4.194 19 C -0.022 4.022 20 O -0.543 6.543 21 Si 0.723 3.277 22 S 0.219 5.781 23 C -0.221 4.221 24 C -0.123 4.123 25 N -0.568 5.568 26 C -0.126 4.126 27 C -0.135 4.135 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.407 0.593 33 H 0.173 0.827 34 H 0.184 0.816 35 H 0.102 0.898 36 H 0.389 0.611 37 H -0.292 1.292 38 H -0.256 1.256 39 H 0.194 0.806 40 H 0.144 0.856 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 16.773 35.972 39.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.282 0.718 5 C -0.056 4.056 6 H 0.168 0.832 7 C -0.175 4.175 8 C -0.177 4.177 9 C 0.039 3.961 10 H 0.107 0.893 11 N -0.338 5.338 12 C 0.183 3.817 13 C -0.317 4.317 14 C -0.006 4.006 15 N -0.306 5.306 16 C 0.159 3.841 17 C -0.077 4.077 18 C -0.314 4.314 19 C -0.133 4.133 20 O -0.352 6.352 21 Si 0.624 3.376 22 S 0.484 5.516 23 C -0.356 4.356 24 C -0.153 4.153 25 N -0.292 5.292 26 C -0.164 4.164 27 C -0.173 4.173 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.191 0.809 34 H 0.201 0.799 35 H 0.120 0.880 36 H 0.238 0.762 37 H -0.219 1.219 38 H -0.180 1.180 39 H 0.211 0.789 40 H 0.162 0.838 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.492 14.638 34.111 37.283 hybrid contribution 1.509 1.678 1.750 2.856 sum -1.982 16.316 35.861 39.448 Atomic orbital electron populations 1.42237 1.22036 1.21066 1.16650 0.72594 0.71884 0.71812 1.22861 1.04642 0.93357 0.84723 0.83246 1.21963 1.03778 1.00467 0.91275 1.21966 1.02137 0.94554 0.99090 1.21443 0.99870 0.91768 0.83022 0.89260 1.44644 1.28878 1.54626 1.05615 1.18743 0.88385 0.87752 0.86820 1.22358 0.99045 1.08703 1.01607 1.23372 0.97981 0.91684 0.87580 1.68450 1.14266 1.13186 1.34667 1.20242 0.86119 0.88364 0.89406 1.17123 1.05247 0.92834 0.92536 1.23643 1.08313 0.97921 1.01561 1.24105 0.90813 1.06553 0.91808 1.86584 1.43291 1.64307 1.40977 0.94687 0.87134 0.72891 0.82840 1.82876 1.60305 1.11938 0.96435 1.26023 1.07804 0.96892 1.04843 1.20173 1.02144 1.01904 0.91078 1.67843 1.35769 1.26425 0.99155 1.21700 1.02490 0.99863 0.92377 1.21955 1.03771 0.92615 0.98930 0.87686 0.88024 0.92658 0.91010 0.75733 0.80934 0.79949 0.88018 0.76196 1.21904 1.17992 0.78850 0.83787 0.90050 0.91353 0.87039 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.74 4.15 -168.68 -0.70 48.03 16 2 H 0.44 -36.00 8.90 -89.70 -0.80 -36.80 16 3 H 0.45 -36.78 8.96 -89.70 -0.80 -37.58 16 4 H 0.45 -37.01 8.96 -89.70 -0.80 -37.81 16 5 C 0.05 -3.33 3.03 44.92 0.14 -3.19 16 6 H 0.15 -9.94 8.14 -2.39 -0.02 -9.95 16 7 C -0.14 7.84 5.43 30.59 0.17 8.00 16 8 C -0.14 6.00 5.46 30.59 0.17 6.16 16 9 C 0.14 -5.73 2.15 44.99 0.10 -5.63 16 10 H 0.09 -3.58 6.51 -2.39 -0.02 -3.60 16 11 N -0.71 20.05 5.23 -324.10 -1.69 18.36 16 12 C 0.43 -7.81 7.68 133.22 1.02 -6.79 16 13 C -0.29 5.91 8.93 22.61 0.20 6.12 16 14 C 0.16 -2.11 11.28 84.60 0.95 -1.16 16 15 N -0.59 2.83 10.31 -189.52 -1.95 0.87 16 16 C 0.43 -2.12 5.83 137.40 0.80 -1.32 16 17 C -0.06 0.27 5.58 -21.17 -0.12 0.15 16 18 C -0.19 1.46 5.63 24.84 0.14 1.60 16 19 C -0.02 0.25 2.36 71.23 0.17 0.42 16 20 O -0.54 5.20 10.39 -148.98 -1.55 3.65 16 21 Si 0.72 -9.03 31.13 68.60 2.14 -6.89 16 22 S 0.22 -2.45 20.50 -56.49 -1.16 -3.61 16 23 C -0.22 2.29 11.20 66.67 0.75 3.03 16 24 C -0.12 0.79 10.06 21.46 0.22 1.01 16 25 N -0.57 5.74 8.84 -186.85 -1.65 4.08 16 26 C -0.13 5.79 5.39 30.59 0.16 5.95 16 27 C -0.13 7.89 5.43 30.59 0.17 8.06 16 28 H 0.10 -6.14 8.14 -2.39 -0.02 -6.16 16 29 H 0.10 -5.97 8.14 -2.38 -0.02 -5.99 16 30 H 0.05 -1.97 7.76 -2.39 -0.02 -1.99 16 31 H 0.07 -2.96 8.14 -2.38 -0.02 -2.98 16 32 H 0.41 -11.30 8.73 -92.71 -0.81 -12.11 16 33 H 0.17 -5.17 6.29 -2.91 -0.02 -5.18 16 34 H 0.18 -3.57 8.06 -2.91 -0.02 -3.60 16 35 H 0.10 -1.52 7.96 -2.38 -0.02 -1.54 16 36 H 0.39 -6.79 8.74 -74.06 -0.65 -7.43 16 37 H -0.29 1.10 7.11 99.48 0.71 1.80 16 38 H -0.26 2.73 7.11 99.48 0.71 3.44 16 39 H 0.19 -3.02 8.06 -2.91 -0.02 -3.04 16 40 H 0.14 -1.04 8.06 -2.91 -0.02 -1.06 16 41 H 0.08 -3.68 8.14 -2.38 -0.02 -3.70 16 42 H 0.07 -2.75 8.14 -2.39 -0.02 -2.77 16 43 H 0.11 -6.76 8.14 -2.38 -0.02 -6.78 16 44 H 0.10 -5.97 8.14 -2.39 -0.02 -5.99 16 Total: 1.00 -99.63 362.36 -4.29 -103.91 By element: Atomic # 1 Polarization: -188.09 SS G_CDS: -2.75 Total: -190.83 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 5.03 Total: 22.42 kcal Atomic # 7 Polarization: 77.35 SS G_CDS: -6.00 Total: 71.35 kcal Atomic # 8 Polarization: 5.20 SS G_CDS: -1.55 Total: 3.65 kcal Atomic # 14 Polarization: -9.03 SS G_CDS: 2.14 Total: -6.89 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -1.16 Total: -3.61 kcal Total: -99.63 -4.29 -103.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17085348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.218 kcal (2) G-P(sol) polarization free energy of solvation -99.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds