Wall clock time and date at job start Mon Mar 8 2021 08:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00897 * 109.47027 * 1 2 4 4 H 1.00896 * 109.47457 * 239.99843 * 1 2 3 5 5 C 1.46897 * 109.46771 * 119.99527 * 1 2 3 6 6 H 1.09004 * 109.47436 * 300.00033 * 5 1 2 7 7 C 1.53001 * 109.47185 * 60.00567 * 5 1 2 8 8 C 1.53003 * 109.47215 * 179.97438 * 7 5 1 9 9 C 1.52998 * 109.47179 * 299.99907 * 8 7 5 10 10 H 1.09000 * 109.46988 * 300.00379 * 9 8 7 11 11 N 1.46492 * 109.47142 * 180.02562 * 9 8 7 12 12 C 1.39006 * 120.00214 * 155.00086 * 11 9 8 13 13 C 1.39269 * 120.02024 * 359.97438 * 12 11 9 14 14 N 1.32055 * 120.14267 * 180.02562 * 13 12 11 15 15 C 1.32030 * 120.19803 * 359.70376 * 14 13 12 16 16 C 1.39441 * 120.04323 * 0.57494 * 15 14 13 17 17 C 1.48184 * 120.07543 * 179.70489 * 16 15 14 18 18 C 1.34699 * 122.79407 * 227.67580 * 17 16 15 19 19 C 1.50701 * 125.23453 * 359.69939 * 18 17 16 20 20 O 1.42904 * 109.46841 * 38.24392 * 19 18 17 21 21 Si 1.86302 * 109.46871 * 158.24099 * 19 18 17 22 22 S 1.75853 * 109.52903 * 179.72813 * 18 17 16 23 23 C 1.75809 * 91.16318 * 359.97438 * 22 18 17 24 24 C 1.32988 * 109.96719 * 0.02562 * 23 22 18 25 25 N 1.32618 * 120.02628 * 179.97438 * 12 11 9 26 26 C 1.53001 * 109.46971 * 59.99943 * 9 8 7 27 27 C 1.52998 * 109.47118 * 180.02562 * 5 1 2 28 28 H 1.08992 * 109.47163 * 59.99819 * 7 5 1 29 29 H 1.09002 * 109.46854 * 299.99560 * 7 5 1 30 30 H 1.08994 * 109.47245 * 179.97438 * 8 7 5 31 31 H 1.09009 * 109.46967 * 59.99756 * 8 7 5 32 32 H 0.96997 * 120.00270 * 334.99332 * 11 9 8 33 33 H 1.08002 * 119.93028 * 359.97438 * 13 12 11 34 34 H 1.07999 * 119.97937 * 180.27524 * 15 14 13 35 35 H 1.08998 * 109.47522 * 278.24383 * 19 18 17 36 36 H 0.96697 * 113.99497 * 184.97156 * 20 19 18 37 37 H 1.48499 * 109.99877 * 300.00372 * 21 19 18 38 38 H 1.48499 * 110.00053 * 61.32360 * 21 19 18 39 39 H 1.08002 * 125.01486 * 180.02562 * 23 22 18 40 40 H 1.08006 * 122.53421 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47623 * 60.00250 * 26 9 8 42 42 H 1.09002 * 109.46854 * 180.02562 * 26 9 8 43 43 H 1.08997 * 109.47473 * 299.99867 * 27 5 1 44 44 H 1.09004 * 109.47229 * 59.99986 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8238 5 6 -0.4896 -0.6924 -1.1995 6 1 -0.1262 -0.1785 -2.0895 7 6 0.0204 -2.1349 -1.1995 8 6 -0.4901 -2.8563 -2.4485 9 6 -2.0201 -2.8563 -2.4481 10 1 -2.3831 -3.3699 -1.5579 11 7 -2.5088 -3.5475 -3.6436 12 6 -3.7691 -4.1338 -3.6411 13 6 -4.5674 -4.0649 -2.5020 14 7 -5.7649 -4.6215 -2.4968 15 6 -6.2140 -5.2410 -3.5728 16 6 -5.4191 -5.3199 -4.7157 17 6 -5.9198 -6.0206 -5.9216 18 6 -5.1845 -6.9234 -6.5988 19 6 -3.7797 -7.3404 -6.2469 20 8 -3.6482 -7.4195 -4.8262 21 14 -3.4203 -9.0072 -6.9976 22 16 -6.1156 -7.5398 -7.9573 23 6 -7.4831 -6.5215 -7.5283 24 6 -7.1939 -5.8051 -6.4458 25 7 -4.2122 -4.7592 -4.7234 26 6 -2.5300 -1.4137 -2.4480 27 6 -2.0196 -0.6919 -1.1999 28 1 -0.3430 -2.6488 -0.3097 29 1 1.1104 -2.1349 -1.1995 30 1 -0.1265 -3.8838 -2.4488 31 1 -0.1270 -2.3425 -3.3388 32 1 -1.9530 -3.5959 -4.4371 33 1 -4.2060 -3.5558 -1.6207 34 1 -7.1957 -5.6911 -3.5661 35 1 -3.0744 -6.6066 -6.6368 36 1 -2.7492 -7.6089 -4.5244 37 1 -4.3754 -10.0166 -6.4740 38 1 -3.5227 -8.9306 -8.4771 39 1 -8.4197 -6.4834 -8.0647 40 1 -7.8932 -5.1096 -6.0057 41 1 -2.1670 -0.8999 -3.3381 42 1 -3.6200 -1.4137 -2.4472 43 1 -2.3833 -1.2055 -0.3100 44 1 -2.3826 0.3359 -1.2001 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17085452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:45:19 Heat of formation + Delta-G solvation = 140.463617 kcal Electronic energy + Delta-G solvation = -26767.338127 eV Core-core repulsion = 23123.383962 eV Total energy + Delta-G solvation = -3643.954164 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13228 -41.02924 -39.48446 -38.10298 -37.47654 -35.57399 -34.44725 -32.02481 -31.88380 -31.12207 -28.78541 -27.59549 -25.31959 -24.59739 -23.98745 -23.62957 -22.81963 -21.38615 -20.34450 -19.09568 -18.71457 -18.45876 -18.31642 -18.25581 -17.85392 -17.60325 -17.31639 -16.63973 -16.30121 -15.99448 -15.95087 -15.25168 -15.08451 -14.91117 -14.35780 -14.34040 -14.14813 -14.06064 -13.79819 -13.72922 -13.50768 -13.34715 -12.84876 -12.73037 -12.57593 -12.47590 -12.31593 -12.26400 -12.19789 -12.04063 -11.68427 -11.41698 -11.07893 -10.59274 -10.15781 -9.73571 -9.58132 -8.79838 -5.27449 -0.52565 0.06060 0.27253 0.35116 0.69885 1.12799 1.44699 1.52114 1.60991 1.86180 2.01861 2.85051 3.09372 3.15227 3.29225 3.36630 3.45035 3.54061 3.67188 3.69880 3.73732 3.90737 3.97244 4.10862 4.15490 4.17171 4.21810 4.22354 4.31975 4.41362 4.43701 4.45976 4.52794 4.64471 4.66502 4.75089 4.81035 4.88777 5.03801 5.04903 5.09725 5.13942 5.15129 5.22457 5.30855 5.37773 5.85130 6.37736 6.58817 6.71473 7.01062 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.003165 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.515887 B = 8844.416441 C = 9698.086935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.450 0.550 3 H 0.449 0.551 4 H 0.444 0.556 5 C 0.050 3.950 6 H 0.150 0.850 7 C -0.135 4.135 8 C -0.124 4.124 9 C 0.142 3.858 10 H 0.090 0.910 11 N -0.705 5.705 12 C 0.364 3.636 13 C -0.016 4.016 14 N -0.423 5.423 15 C -0.024 4.024 16 C 0.212 3.788 17 C -0.053 4.053 18 C -0.160 4.160 19 C -0.018 4.018 20 O -0.549 6.549 21 Si 0.746 3.254 22 S 0.078 5.922 23 C -0.196 4.196 24 C -0.127 4.127 25 N -0.496 5.496 26 C -0.140 4.140 27 C -0.138 4.138 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.408 0.592 33 H 0.190 0.810 34 H 0.161 0.839 35 H 0.102 0.898 36 H 0.398 0.602 37 H -0.295 1.295 38 H -0.270 1.270 39 H 0.194 0.806 40 H 0.165 0.835 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.185 25.087 21.546 40.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.282 0.718 3 H 0.280 0.720 4 H 0.274 0.726 5 C -0.056 4.056 6 H 0.168 0.832 7 C -0.173 4.173 8 C -0.163 4.163 9 C 0.038 3.962 10 H 0.108 0.892 11 N -0.338 5.338 12 C 0.122 3.878 13 C -0.185 4.185 14 N -0.136 5.136 15 C -0.184 4.184 16 C 0.071 3.929 17 C -0.067 4.067 18 C -0.278 4.278 19 C -0.130 4.130 20 O -0.358 6.358 21 Si 0.651 3.349 22 S 0.342 5.658 23 C -0.330 4.330 24 C -0.157 4.157 25 N -0.219 5.219 26 C -0.179 4.179 27 C -0.176 4.176 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.207 0.793 34 H 0.178 0.822 35 H 0.119 0.881 36 H 0.249 0.751 37 H -0.222 1.222 38 H -0.196 1.196 39 H 0.211 0.789 40 H 0.182 0.818 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 23.450 23.457 19.815 38.637 hybrid contribution -1.044 0.922 0.308 1.427 sum 22.406 24.379 20.123 38.747 Atomic orbital electron populations 1.42247 1.22093 1.20917 1.16789 0.71815 0.71957 0.72608 1.22874 0.96480 0.96222 0.90034 0.83236 1.21966 1.03726 0.92380 0.99265 1.21690 0.91665 1.02749 1.00170 1.21447 0.95573 0.92190 0.86981 0.89236 1.44631 1.12800 1.58341 1.17992 1.19453 0.88611 0.89854 0.89849 1.23518 0.91375 1.04350 0.99248 1.68163 1.13863 1.04668 1.26893 1.23266 1.02256 1.03167 0.89734 1.19615 0.89234 0.91853 0.92243 1.17452 0.94445 0.98527 0.96305 1.24252 1.00770 1.02410 1.00373 1.23921 0.91948 1.09691 0.87448 1.86449 1.35986 1.94947 1.18421 0.94367 0.87916 0.74891 0.77743 1.84696 1.08373 1.43987 1.28779 1.25851 1.03021 1.01813 1.02341 1.20301 0.95933 1.02443 0.96984 1.67871 1.14161 1.12265 1.27630 1.21983 1.01181 0.95035 0.99747 1.21962 0.92492 1.03890 0.99294 0.88129 0.86994 0.90873 0.90002 0.75543 0.79313 0.82215 0.88097 0.75138 1.22204 1.19590 0.78881 0.81791 0.90824 0.92854 0.88100 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.89 4.15 -168.68 -0.70 48.19 16 2 H 0.45 -37.12 8.96 -89.70 -0.80 -37.93 16 3 H 0.45 -36.74 8.96 -89.70 -0.80 -37.54 16 4 H 0.44 -36.02 8.90 -89.70 -0.80 -36.82 16 5 C 0.05 -3.33 3.02 44.92 0.14 -3.19 16 6 H 0.15 -10.02 8.14 -2.39 -0.02 -10.04 16 7 C -0.14 8.05 5.43 30.60 0.17 8.22 16 8 C -0.12 5.91 5.39 30.59 0.16 6.07 16 9 C 0.14 -5.89 2.14 44.99 0.10 -5.79 16 10 H 0.09 -3.70 6.46 -2.39 -0.02 -3.72 16 11 N -0.71 21.50 5.25 -324.27 -1.70 19.80 16 12 C 0.36 -7.33 7.64 133.03 1.02 -6.32 16 13 C -0.02 0.30 10.00 84.91 0.85 1.15 16 14 N -0.42 4.78 10.48 -193.78 -2.03 2.75 16 15 C -0.02 0.23 10.75 84.95 0.91 1.14 16 16 C 0.21 -2.00 5.06 41.89 0.21 -1.79 16 17 C -0.05 0.42 5.49 -21.16 -0.12 0.30 16 18 C -0.16 1.23 5.80 24.87 0.14 1.37 16 19 C -0.02 0.23 2.41 71.24 0.17 0.40 16 20 O -0.55 7.79 10.35 -148.98 -1.54 6.25 16 21 Si 0.75 -9.64 31.29 68.60 2.15 -7.49 16 22 S 0.08 -0.56 20.88 -56.49 -1.18 -1.74 16 23 C -0.20 2.03 11.18 66.65 0.75 2.78 16 24 C -0.13 1.28 9.79 21.39 0.21 1.49 16 25 N -0.50 6.57 8.98 -181.74 -1.63 4.94 16 26 C -0.14 6.17 5.42 30.58 0.17 6.34 16 27 C -0.14 7.94 5.43 30.58 0.17 8.11 16 28 H 0.10 -6.06 8.14 -2.39 -0.02 -6.08 16 29 H 0.11 -6.89 8.14 -2.39 -0.02 -6.91 16 30 H 0.07 -3.10 8.14 -2.39 -0.02 -3.12 16 31 H 0.08 -3.83 8.14 -2.38 -0.02 -3.85 16 32 H 0.41 -12.35 8.73 -92.71 -0.81 -13.16 16 33 H 0.19 -5.33 6.08 -2.91 -0.02 -5.34 16 34 H 0.16 -1.66 8.05 -2.91 -0.02 -1.69 16 35 H 0.10 -1.67 7.96 -2.39 -0.02 -1.69 16 36 H 0.40 -9.52 8.86 -74.06 -0.66 -10.17 16 37 H -0.30 1.13 7.11 99.48 0.71 1.84 16 38 H -0.27 2.12 7.11 99.48 0.71 2.82 16 39 H 0.19 -2.96 8.06 -2.91 -0.02 -2.99 16 40 H 0.16 -2.32 8.06 -2.91 -0.02 -2.34 16 41 H 0.07 -3.11 8.14 -2.39 -0.02 -3.13 16 42 H 0.05 -1.92 7.68 -2.39 -0.02 -1.94 16 43 H 0.10 -5.92 8.14 -2.39 -0.02 -5.94 16 44 H 0.10 -6.03 8.14 -2.38 -0.02 -6.05 16 Total: 1.00 -98.43 362.46 -4.35 -102.78 By element: Atomic # 1 Polarization: -193.02 SS G_CDS: -2.75 Total: -195.77 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 5.04 Total: 20.29 kcal Atomic # 7 Polarization: 81.75 SS G_CDS: -6.06 Total: 75.68 kcal Atomic # 8 Polarization: 7.79 SS G_CDS: -1.54 Total: 6.25 kcal Atomic # 14 Polarization: -9.64 SS G_CDS: 2.15 Total: -7.49 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.18 Total: -1.74 kcal Total: -98.43 -4.35 -102.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17085452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.242 kcal (2) G-P(sol) polarization free energy of solvation -98.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds