Wall clock time and date at job start Mon Mar 8 2021 08:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00903 * 1 3 3 H 1.00900 * 109.47241 * 1 2 4 4 H 1.00901 * 109.46818 * 240.00116 * 1 2 3 5 5 C 1.46898 * 109.46897 * 120.00046 * 1 2 3 6 6 H 1.09007 * 109.46899 * 179.97438 * 5 1 2 7 7 C 1.52996 * 109.47312 * 299.99897 * 5 1 2 8 8 C 1.53002 * 109.47236 * 180.02562 * 7 5 1 9 9 C 1.52997 * 109.46836 * 300.00128 * 8 7 5 10 10 H 1.08998 * 109.47315 * 299.99861 * 9 8 7 11 11 N 1.46505 * 109.46883 * 179.97438 * 9 8 7 12 12 C 1.38415 * 119.99759 * 85.00296 * 11 9 8 13 13 N 1.32360 * 119.14986 * 179.97438 * 12 11 9 14 14 C 1.33218 * 120.58135 * 180.02562 * 13 12 11 15 15 C 1.48061 * 120.51572 * 179.97438 * 14 13 12 16 16 C 1.34568 * 122.86654 * 47.90904 * 15 14 13 17 17 C 1.50696 * 124.74691 * 359.97438 * 16 15 14 18 18 O 1.42898 * 109.47285 * 38.43545 * 17 16 15 19 19 Si 1.86304 * 109.47400 * 158.43138 * 17 16 15 20 20 S 1.70636 * 110.50985 * 179.97438 * 16 15 14 21 21 C 1.75731 * 91.70372 * 0.02562 * 20 16 15 22 22 C 1.33115 * 109.77754 * 359.72044 * 21 20 16 23 23 C 1.39882 * 118.96918 * 359.75129 * 14 13 12 24 24 C 1.38222 * 118.44399 * 0.48834 * 23 14 13 25 25 N 1.32438 * 119.30385 * 359.50565 * 24 23 14 26 26 C 1.52996 * 109.47312 * 59.99919 * 9 8 7 27 27 C 1.52997 * 109.47020 * 60.00183 * 5 1 2 28 28 H 1.09001 * 109.47102 * 300.00179 * 7 5 1 29 29 H 1.08994 * 109.47344 * 60.00066 * 7 5 1 30 30 H 1.08997 * 109.47374 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.46648 * 59.99794 * 8 7 5 32 32 H 0.96994 * 119.99729 * 264.99355 * 11 9 8 33 33 H 1.08998 * 109.47133 * 278.43364 * 17 16 15 34 34 H 0.96694 * 114.00374 * 59.99772 * 18 17 16 35 35 H 1.48495 * 110.00093 * 179.97438 * 19 17 16 36 36 H 1.48504 * 110.00234 * 301.32217 * 19 17 16 37 37 H 1.08005 * 125.11057 * 179.97438 * 21 20 16 38 38 H 1.07997 * 123.13152 * 180.26380 * 22 21 20 39 39 H 1.07997 * 120.77987 * 180.24654 * 23 14 13 40 40 H 1.07996 * 120.34482 * 179.78467 * 24 23 14 41 41 H 1.09002 * 109.47489 * 60.00258 * 26 9 8 42 42 H 1.09001 * 109.47102 * 179.97438 * 26 9 8 43 43 H 1.09003 * 109.47381 * 59.99956 * 27 5 1 44 44 H 1.08998 * 109.47315 * 299.99656 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4896 -0.6925 -1.1994 6 1 -1.5797 -0.6929 -1.1992 7 6 0.0204 0.0287 -2.4487 8 6 -0.4901 -0.6922 -3.6979 9 6 0.0194 -2.1348 -3.6981 10 1 1.1094 -2.1352 -3.6983 11 7 -0.4699 -2.8253 -4.8940 12 6 0.2246 -2.7201 -6.0867 13 7 -0.2323 -3.3513 -7.1566 14 6 0.4137 -3.2700 -8.3189 15 6 -0.0984 -3.9772 -9.5147 16 6 -1.3855 -3.9179 -9.9028 17 6 -2.4625 -3.1411 -9.1904 18 8 -1.9249 -1.9038 -8.7191 19 14 -3.8648 -2.8000 -10.3685 20 16 -1.6275 -4.8452 -11.3146 21 6 0.0655 -5.3141 -11.3601 22 6 0.7143 -4.7582 -10.3393 23 6 1.5807 -2.5024 -8.3931 24 6 2.0233 -1.8649 -7.2493 25 7 1.3300 -1.9903 -6.1279 26 6 -0.4906 -2.8561 -2.4489 27 6 0.0204 -2.1350 -1.1994 28 1 -0.3430 1.0564 -2.4487 29 1 1.1103 0.0288 -2.4487 30 1 -0.1272 -0.1782 -4.5879 31 1 -1.5802 -0.6918 -3.6976 32 1 -1.2804 -3.3563 -4.8499 33 1 -2.8312 -3.7224 -8.3453 34 1 -1.5775 -1.3339 -9.4188 35 1 -4.9338 -2.0349 -9.6778 36 1 -3.3687 -2.0352 -11.5409 37 1 0.5131 -5.9535 -12.1065 38 1 1.7703 -4.9006 -10.1633 39 1 2.1253 -2.4131 -9.3214 40 1 2.9225 -1.2673 -7.2710 41 1 -1.5806 -2.8558 -2.4487 42 1 -0.1279 -3.8840 -2.4493 43 1 -0.3430 -2.6488 -0.3094 44 1 1.1104 -2.1350 -1.1994 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17085550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:46:37 Heat of formation + Delta-G solvation = 145.495059 kcal Electronic energy + Delta-G solvation = -26833.904353 eV Core-core repulsion = 23190.168368 eV Total energy + Delta-G solvation = -3643.735985 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.133 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99816 -41.05242 -39.65079 -38.00136 -37.55821 -35.04812 -34.47436 -32.04846 -31.81080 -31.47933 -28.85015 -27.68752 -25.19524 -24.54272 -24.02538 -23.67254 -22.79534 -21.42613 -20.54315 -19.24844 -18.84835 -18.48811 -18.35396 -18.15733 -17.44919 -17.31224 -16.67563 -16.47808 -16.29153 -16.11373 -15.96965 -15.31176 -15.24428 -15.01810 -14.81537 -14.22273 -14.12538 -13.90760 -13.85852 -13.81437 -13.62089 -13.38196 -12.81317 -12.55570 -12.53136 -12.40355 -12.27576 -11.92195 -11.89429 -11.78720 -11.67406 -11.45563 -11.16659 -10.87213 -10.10337 -9.73258 -9.41019 -9.02022 -5.16466 -0.37982 0.27986 0.30637 0.48498 0.83907 1.16278 1.47951 1.51813 1.59417 1.77847 1.96556 2.97130 3.09809 3.12941 3.19010 3.23536 3.49099 3.60019 3.68830 3.75690 3.84416 3.93305 3.96920 4.11840 4.21781 4.23976 4.31156 4.34508 4.37236 4.43134 4.49435 4.53279 4.61713 4.63006 4.70938 4.81075 4.88477 4.93607 4.96713 5.04930 5.07360 5.18104 5.19329 5.26725 5.32686 5.42851 5.92977 6.15790 6.23574 6.45851 7.38155 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.003232 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.617972 B = 8662.418625 C = 9386.320785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 H 0.443 0.557 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.052 3.948 6 H 0.152 0.848 7 C -0.134 4.134 8 C -0.127 4.127 9 C 0.156 3.844 10 H 0.080 0.920 11 N -0.699 5.699 12 C 0.552 3.448 13 N -0.564 5.564 14 C 0.281 3.719 15 C -0.074 4.074 16 C -0.229 4.229 17 C -0.018 4.018 18 O -0.527 6.527 19 Si 0.723 3.277 20 S 0.205 5.795 21 C -0.218 4.218 22 C -0.127 4.127 23 C -0.284 4.284 24 C 0.184 3.816 25 N -0.578 5.578 26 C -0.127 4.127 27 C -0.133 4.133 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.126 0.874 34 H 0.376 0.624 35 H -0.276 1.276 36 H -0.272 1.272 37 H 0.191 0.809 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.193 0.807 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 10.824 31.226 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.018 5.018 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.054 4.054 6 H 0.170 0.830 7 C -0.172 4.172 8 C -0.167 4.167 9 C 0.052 3.948 10 H 0.098 0.902 11 N -0.336 5.336 12 C 0.194 3.806 13 N -0.285 5.285 14 C 0.132 3.868 15 C -0.090 4.090 16 C -0.350 4.350 17 C -0.130 4.130 18 O -0.333 6.333 19 Si 0.625 3.375 20 S 0.472 5.528 21 C -0.353 4.353 22 C -0.156 4.156 23 C -0.310 4.310 24 C 0.018 3.982 25 N -0.302 5.302 26 C -0.166 4.166 27 C -0.171 4.171 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.224 0.776 35 H -0.202 1.202 36 H -0.198 1.198 37 H 0.208 0.792 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.210 0.790 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.134 0.866 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.594 10.750 31.305 33.104 hybrid contribution 2.284 0.926 -0.434 2.502 sum 2.878 11.676 30.871 33.131 Atomic orbital electron populations 1.42218 1.22027 1.21028 1.16549 0.72625 0.71876 0.71711 1.22830 1.04633 0.93324 0.84570 0.83024 1.21917 1.03435 1.00370 0.91502 1.21815 1.01216 0.95024 0.98652 1.21192 0.99513 0.91388 0.82736 0.90230 1.44279 1.28615 1.55199 1.05518 1.19529 0.86861 0.87142 0.87043 1.67861 1.34805 1.26582 0.99301 1.19375 0.88817 0.89188 0.89428 1.17454 0.92846 1.02529 0.96132 1.24614 0.99016 1.07832 1.03502 1.24390 0.98493 0.85357 1.04725 1.86616 1.80257 1.29405 1.37064 0.94555 0.76456 0.90190 0.76275 1.83096 1.08713 1.41635 1.19393 1.26045 0.96936 1.07774 1.04579 1.20263 1.01691 0.98839 0.94826 1.22680 1.00512 1.05189 1.02651 1.23273 0.96775 0.91930 0.86175 1.67894 1.08992 1.22995 1.30302 1.21745 1.02433 0.99805 0.92608 1.21948 1.03589 0.92641 0.98916 0.87828 0.88679 0.93856 0.91480 0.75147 0.85605 0.77591 1.20156 1.19791 0.79219 0.82636 0.82874 0.79005 0.89932 0.91545 0.86635 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 46.65 4.15 -168.68 -0.70 45.95 16 2 H 0.44 -34.49 8.90 -89.69 -0.80 -35.28 16 3 H 0.45 -35.49 8.96 -89.69 -0.80 -36.30 16 4 H 0.45 -35.94 8.96 -89.69 -0.80 -36.74 16 5 C 0.05 -3.26 3.02 44.91 0.14 -3.12 16 6 H 0.15 -9.54 8.14 -2.38 -0.02 -9.56 16 7 C -0.13 6.90 5.43 30.59 0.17 7.07 16 8 C -0.13 4.64 5.51 30.59 0.17 4.81 16 9 C 0.16 -5.13 2.45 44.99 0.11 -5.02 16 10 H 0.08 -2.36 7.50 -2.39 -0.02 -2.38 16 11 N -0.70 15.60 5.22 -330.51 -1.73 13.88 16 12 C 0.55 -7.87 8.40 261.53 2.20 -5.67 16 13 N -0.56 5.83 8.94 -187.07 -1.67 4.16 16 14 C 0.28 -3.09 5.05 41.94 0.21 -2.87 16 15 C -0.07 0.85 5.50 -21.17 -0.12 0.73 16 16 C -0.23 2.89 5.61 24.84 0.14 3.03 16 17 C -0.02 0.24 2.41 71.23 0.17 0.42 16 18 O -0.53 6.00 10.41 -148.98 -1.55 4.45 16 19 Si 0.72 -10.03 31.13 68.60 2.14 -7.90 16 20 S 0.20 -3.09 20.49 -56.49 -1.16 -4.25 16 21 C -0.22 3.35 11.20 66.67 0.75 4.10 16 22 C -0.13 1.74 9.92 21.46 0.21 1.95 16 23 C -0.28 4.13 9.74 22.66 0.22 4.36 16 24 C 0.18 -3.09 11.29 84.60 0.95 -2.14 16 25 N -0.58 9.06 9.19 -198.25 -1.82 7.24 16 26 C -0.13 5.19 5.39 30.61 0.17 5.36 16 27 C -0.13 7.20 5.43 30.61 0.17 7.37 16 28 H 0.10 -5.53 8.14 -2.39 -0.02 -5.55 16 29 H 0.09 -4.91 8.14 -2.39 -0.02 -4.93 16 30 H 0.04 -1.14 8.14 -2.39 -0.02 -1.16 16 31 H 0.07 -2.35 8.14 -2.38 -0.02 -2.37 16 32 H 0.41 -9.28 8.71 -92.71 -0.81 -10.09 16 33 H 0.13 -1.68 7.96 -2.39 -0.02 -1.70 16 34 H 0.38 -5.55 8.70 -74.06 -0.64 -6.20 16 35 H -0.28 2.17 7.11 99.48 0.71 2.88 16 36 H -0.27 2.53 7.11 99.48 0.71 3.24 16 37 H 0.19 -3.72 8.06 -2.91 -0.02 -3.74 16 38 H 0.16 -2.55 8.06 -2.91 -0.02 -2.58 16 39 H 0.15 -2.71 8.06 -2.91 -0.02 -2.73 16 40 H 0.19 -4.50 8.06 -2.91 -0.02 -4.52 16 41 H 0.08 -3.37 8.14 -2.39 -0.02 -3.39 16 42 H 0.07 -2.34 8.14 -2.39 -0.02 -2.36 16 43 H 0.12 -6.63 8.14 -2.39 -0.02 -6.65 16 44 H 0.10 -5.25 8.14 -2.39 -0.02 -5.27 16 Total: 1.00 -89.90 365.31 -3.59 -93.50 By element: Atomic # 1 Polarization: -174.64 SS G_CDS: -2.75 Total: -177.39 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 5.65 Total: 20.36 kcal Atomic # 7 Polarization: 77.14 SS G_CDS: -5.92 Total: 71.22 kcal Atomic # 8 Polarization: 6.00 SS G_CDS: -1.55 Total: 4.45 kcal Atomic # 14 Polarization: -10.03 SS G_CDS: 2.14 Total: -7.90 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.16 Total: -4.25 kcal Total: -89.90 -3.59 -93.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17085550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.992 kcal (2) G-P(sol) polarization free energy of solvation -89.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds