Wall clock time and date at job start Mon Mar 8 2021 08:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00907 * 1 3 3 H 1.00899 * 109.47139 * 1 2 4 4 H 1.00896 * 109.47118 * 239.99305 * 1 2 3 5 5 C 1.46897 * 109.46632 * 119.99620 * 1 2 3 6 6 H 1.09006 * 109.46994 * 179.97438 * 5 1 2 7 7 C 1.53004 * 109.47389 * 299.99901 * 5 1 2 8 8 C 1.53001 * 109.47189 * 180.02562 * 7 5 1 9 9 C 1.53004 * 109.47084 * 299.99911 * 8 7 5 10 10 H 1.08997 * 109.47107 * 300.00177 * 9 8 7 11 11 N 1.46500 * 109.47056 * 179.97438 * 9 8 7 12 12 C 1.38013 * 119.99810 * 85.00122 * 11 9 8 13 13 N 1.33101 * 120.03160 * 0.02562 * 12 11 9 14 14 C 1.32174 * 120.13694 * 179.97438 * 13 12 11 15 15 N 1.32094 * 120.20379 * 359.73333 * 14 13 12 16 16 C 1.33322 * 120.05974 * 0.54099 * 15 14 13 17 17 C 1.47908 * 120.06728 * 179.72224 * 16 15 14 18 18 C 1.34665 * 122.88871 * 311.91484 * 17 16 15 19 19 C 1.50698 * 124.75028 * 0.02562 * 18 17 16 20 20 O 1.42901 * 109.47304 * 321.52713 * 19 18 17 21 21 Si 1.86300 * 109.47322 * 201.52704 * 19 18 17 22 22 S 1.70634 * 110.49951 * 179.75342 * 18 17 16 23 23 C 1.75731 * 91.71523 * 0.24581 * 22 18 17 24 24 C 1.33072 * 109.80367 * 359.97438 * 23 22 18 25 25 N 1.32834 * 120.03525 * 180.02562 * 12 11 9 26 26 C 1.52996 * 109.46880 * 60.00203 * 9 8 7 27 27 C 1.52998 * 109.47540 * 59.99955 * 5 1 2 28 28 H 1.09000 * 109.46877 * 300.00405 * 7 5 1 29 29 H 1.08997 * 109.47025 * 60.00152 * 7 5 1 30 30 H 1.09000 * 109.47335 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47293 * 59.99974 * 8 7 5 32 32 H 0.96993 * 120.00447 * 265.00204 * 11 9 8 33 33 H 1.08009 * 119.90196 * 180.02562 * 14 13 12 34 34 H 1.09000 * 109.47183 * 81.52385 * 19 18 17 35 35 H 0.96699 * 114.00192 * 299.99783 * 20 19 18 36 36 H 1.48496 * 110.00142 * 180.02562 * 21 19 18 37 37 H 1.48499 * 109.99797 * 301.32040 * 21 19 18 38 38 H 1.08003 * 125.09778 * 179.97438 * 23 22 18 39 39 H 1.07998 * 123.11793 * 179.97438 * 24 23 22 40 40 H 1.08997 * 109.47272 * 60.00075 * 26 9 8 41 41 H 1.09006 * 109.47019 * 180.02562 * 26 9 8 42 42 H 1.09006 * 109.47038 * 59.99724 * 27 5 1 43 43 H 1.08997 * 109.47043 * 299.99951 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0091 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4895 -0.6924 -1.1995 6 1 -1.5796 -0.6929 -1.1993 7 6 0.0205 0.0289 -2.4487 8 6 -0.4899 -0.6919 -3.6980 9 6 0.0196 -2.1346 -3.6984 10 1 1.1096 -2.1349 -3.6985 11 7 -0.4696 -2.8250 -4.8943 12 6 0.2228 -2.7199 -6.0835 13 7 1.3354 -1.9919 -6.1445 14 6 2.0005 -1.8903 -7.2822 15 7 1.5678 -2.5144 -8.3629 16 6 0.4513 -3.2413 -8.3123 17 6 -0.0367 -3.9353 -9.5239 18 6 -0.1429 -3.3285 -10.7214 19 6 0.2133 -1.8890 -10.9895 20 8 -0.1847 -1.0847 -9.8774 21 14 -0.6680 -1.3066 -12.5240 22 16 -0.7300 -4.4199 -11.8943 23 6 -0.8334 -5.7165 -10.7127 24 6 -0.4305 -5.2758 -9.5234 25 7 -0.2204 -3.3452 -7.1685 26 6 -0.4904 -2.8559 -2.4492 27 6 0.0205 -2.1349 -1.1996 28 1 -0.3429 1.0566 -2.4486 29 1 1.1105 0.0289 -2.4487 30 1 -0.1270 -0.1778 -4.5880 31 1 -1.5799 -0.6916 -3.6979 32 1 -1.2801 -3.3560 -4.8504 33 1 2.9031 -1.2988 -7.3272 34 1 1.2902 -1.8020 -11.1338 35 1 -1.1330 -1.1138 -9.6903 36 1 -0.3245 0.1115 -12.7997 37 1 -0.2868 -2.1552 -13.6815 38 1 -1.1729 -6.7205 -10.9205 39 1 -0.4074 -5.8975 -8.6406 40 1 -1.5804 -2.8556 -2.4491 41 1 -0.1270 -3.8836 -2.4492 42 1 -0.3429 -2.6488 -0.3097 43 1 1.1104 -2.1349 -1.1996 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081502_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:04 Heat of formation + Delta-G solvation = 191.260442 kcal Electronic energy + Delta-G solvation = -26760.758059 eV Core-core repulsion = 23053.580700 eV Total energy + Delta-G solvation = -3707.177360 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59841 -43.20902 -40.53549 -39.88809 -38.11369 -37.15267 -35.47086 -34.21775 -33.95267 -32.24115 -30.96166 -28.74681 -26.60142 -26.13623 -25.96269 -25.12082 -24.08361 -23.43385 -21.52005 -21.45743 -21.20292 -20.53011 -19.94341 -19.87988 -19.17528 -18.38668 -18.03924 -17.55649 -17.25499 -17.14035 -16.89863 -16.85345 -16.44147 -16.09787 -15.85770 -15.81173 -15.70476 -15.36112 -14.94596 -14.81196 -14.61733 -14.53359 -14.48119 -14.41748 -14.19424 -13.84800 -13.25260 -13.18269 -13.03782 -12.89088 -12.61302 -12.27669 -11.42937 -11.35159 -11.27245 -10.66486 -10.37109 -10.14490 -5.71233 -1.21383 -1.19128 -0.62519 -0.51337 -0.21592 0.16073 0.49136 0.61693 0.67323 0.72660 0.82429 0.91482 0.97707 1.33126 1.47319 1.57716 1.65885 1.89941 1.99480 2.03403 2.14482 2.22371 2.25982 2.34673 2.43009 2.48032 2.65979 2.67796 2.82446 2.85181 2.92677 3.02795 3.16357 3.30313 3.37809 3.52830 3.60928 3.66555 3.71175 3.90761 4.10048 4.25610 4.46895 4.49464 4.61639 4.82429 5.13878 5.43386 5.73508 6.60393 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.002947 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.403880 B = 9497.850633 C =10179.844751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.437 0.563 4 H 0.437 0.563 5 C 0.023 3.977 6 H 0.143 0.857 7 C -0.138 4.138 8 C -0.130 4.130 9 C 0.158 3.842 10 H 0.100 0.900 11 N -0.689 5.689 12 C 0.597 3.403 13 N -0.613 5.613 14 C 0.385 3.615 15 N -0.560 5.560 16 C 0.484 3.516 17 C -0.049 4.049 18 C -0.210 4.210 19 C -0.020 4.020 20 O -0.530 6.530 21 Si 0.650 3.350 22 S 0.209 5.791 23 C -0.223 4.223 24 C -0.101 4.101 25 N -0.593 5.593 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.206 0.794 34 H 0.132 0.868 35 H 0.372 0.628 36 H -0.233 1.233 37 H -0.232 1.232 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 9.624 33.058 34.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.266 0.734 4 H 0.265 0.735 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.176 4.176 8 C -0.170 4.170 9 C 0.052 3.948 10 H 0.118 0.882 11 N -0.327 5.327 12 C 0.232 3.768 13 N -0.343 5.343 14 C 0.087 3.913 15 N -0.283 5.283 16 C 0.207 3.793 17 C -0.065 4.065 18 C -0.331 4.331 19 C -0.133 4.133 20 O -0.334 6.334 21 Si 0.549 3.451 22 S 0.474 5.526 23 C -0.358 4.358 24 C -0.130 4.130 25 N -0.322 5.322 26 C -0.167 4.167 27 C -0.174 4.174 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.256 0.744 33 H 0.222 0.778 34 H 0.149 0.851 35 H 0.219 0.781 36 H -0.156 1.156 37 H -0.156 1.156 38 H 0.192 0.808 39 H 0.164 0.836 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.548 10.124 30.635 32.365 hybrid contribution 0.621 -0.429 2.247 2.370 sum -1.927 9.695 32.882 34.335 Atomic orbital electron populations 1.42647 1.21340 1.20734 1.18642 0.73741 0.73401 0.73471 1.23601 1.04479 0.95757 0.84202 0.83881 1.22040 1.03298 1.00151 0.92115 1.21956 1.01936 0.95790 0.97281 1.20976 1.00691 0.90304 0.82866 0.88237 1.43937 1.28921 1.54631 1.05254 1.19208 0.85802 0.85456 0.86343 1.68515 1.10000 1.24883 1.30899 1.25103 0.95672 0.88918 0.81631 1.69136 1.15324 1.12203 1.31598 1.20633 0.84588 0.85236 0.88794 1.16734 1.06369 0.93469 0.89975 1.24667 1.07506 1.02994 0.97970 1.24522 1.04852 0.84882 0.99060 1.86530 1.28999 1.67438 1.50465 0.95072 0.90475 0.83345 0.76174 1.83555 1.59020 0.99573 1.10409 1.25750 1.09409 1.04317 0.96345 1.20034 1.00409 0.93813 0.98772 1.68624 1.36034 1.27901 0.99599 1.21786 1.02537 1.00871 0.91534 1.22010 1.03318 0.90760 1.01353 0.88959 0.88919 0.89009 0.90512 0.74391 0.77809 0.85126 0.78121 1.15590 1.15602 0.80811 0.83565 0.89821 0.88786 0.88639 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 24.02 4.15 -4.67 -0.02 24.00 16 2 H 0.43 -16.79 8.90 -39.29 -0.35 -17.14 16 3 H 0.44 -17.13 8.96 -39.29 -0.35 -17.48 16 4 H 0.44 -17.20 8.96 -39.29 -0.35 -17.55 16 5 C 0.02 -0.74 3.02 -67.71 -0.20 -0.95 16 6 H 0.14 -4.56 8.14 -51.93 -0.42 -4.99 16 7 C -0.14 3.75 5.43 -26.73 -0.15 3.60 16 8 C -0.13 2.75 5.51 -26.73 -0.15 2.60 16 9 C 0.16 -3.06 2.46 -67.93 -0.17 -3.23 16 10 H 0.10 -1.79 7.53 -51.93 -0.39 -2.18 16 11 N -0.69 10.14 5.21 -55.67 -0.29 9.85 16 12 C 0.60 -5.98 8.45 -322.15 -2.72 -8.70 16 13 N -0.61 6.15 9.34 -15.38 -0.14 6.01 16 14 C 0.38 -3.33 12.39 -91.57 -1.13 -4.46 16 15 N -0.56 3.43 8.96 -12.57 -0.11 3.31 16 16 C 0.48 -3.00 5.86 -156.09 -0.91 -3.91 16 17 C -0.05 0.31 5.62 -106.65 -0.60 -0.29 16 18 C -0.21 1.48 5.61 -35.57 -0.20 1.28 16 19 C -0.02 0.15 2.40 36.00 0.09 0.24 16 20 O -0.53 3.95 10.43 -35.23 -0.37 3.58 16 21 Si 0.65 -5.15 31.13 -169.99 -5.29 -10.44 16 22 S 0.21 -1.62 20.49 -107.50 -2.20 -3.82 16 23 C -0.22 1.79 11.19 28.94 0.32 2.12 16 24 C -0.10 0.72 10.08 -40.83 -0.41 0.31 16 25 N -0.59 4.44 10.46 -11.95 -0.13 4.32 16 26 C -0.13 2.93 5.39 -26.71 -0.14 2.79 16 27 C -0.14 3.82 5.43 -26.71 -0.15 3.68 16 28 H 0.09 -2.55 8.14 -51.93 -0.42 -2.98 16 29 H 0.09 -2.51 8.14 -51.93 -0.42 -2.94 16 30 H 0.09 -1.57 8.14 -51.93 -0.42 -1.99 16 31 H 0.08 -1.60 8.14 -51.93 -0.42 -2.02 16 32 H 0.42 -6.38 8.72 -40.82 -0.36 -6.74 16 33 H 0.21 -2.39 8.06 -52.48 -0.42 -2.81 16 34 H 0.13 -0.84 7.96 -51.93 -0.41 -1.25 16 35 H 0.37 -3.80 8.70 45.56 0.40 -3.40 16 36 H -0.23 1.15 7.11 56.52 0.40 1.55 16 37 H -0.23 1.39 7.11 56.52 0.40 1.79 16 38 H 0.17 -1.73 8.06 -52.48 -0.42 -2.16 16 39 H 0.15 -1.16 8.06 -52.49 -0.42 -1.59 16 40 H 0.08 -1.91 8.14 -51.93 -0.42 -2.34 16 41 H 0.09 -1.93 8.14 -51.93 -0.42 -2.35 16 42 H 0.10 -2.76 8.14 -51.93 -0.42 -3.18 16 43 H 0.09 -2.61 8.14 -51.93 -0.42 -3.03 16 LS Contribution 360.45 15.07 5.43 5.43 Total: 1.00 -41.71 360.45 -15.74 -57.45 By element: Atomic # 1 Polarization: -88.68 SS G_CDS: -6.09 Total: -94.77 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -6.53 Total: -4.92 kcal Atomic # 7 Polarization: 48.18 SS G_CDS: -0.69 Total: 47.49 kcal Atomic # 8 Polarization: 3.95 SS G_CDS: -0.37 Total: 3.58 kcal Atomic # 14 Polarization: -5.15 SS G_CDS: -5.29 Total: -10.44 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.20 Total: -3.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -41.71 -15.74 -57.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.710 kcal (2) G-P(sol) polarization free energy of solvation -41.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds