Wall clock time and date at job start Mon Mar 8 2021 09:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00895 * 1 3 3 H 1.00902 * 109.47266 * 1 2 4 4 H 1.00904 * 109.47295 * 239.99297 * 1 2 3 5 5 C 1.46911 * 109.46889 * 119.99786 * 1 2 3 6 6 H 1.09002 * 109.46944 * 299.99820 * 5 1 2 7 7 C 1.52996 * 109.47122 * 59.99969 * 5 1 2 8 8 C 1.52998 * 109.47028 * 180.02562 * 7 5 1 9 9 C 1.53005 * 109.47002 * 299.99858 * 8 7 5 10 10 H 1.08998 * 109.46811 * 300.00036 * 9 8 7 11 11 N 1.46499 * 109.46769 * 179.97438 * 9 8 7 12 12 C 1.34775 * 119.99586 * 155.00051 * 11 9 8 13 13 O 1.21549 * 120.00296 * 359.97438 * 12 11 9 14 14 C 1.47887 * 119.99956 * 180.02562 * 12 11 9 15 15 C 1.39999 * 120.06487 * 179.97438 * 14 12 11 16 16 C 1.38363 * 118.02913 * 179.76786 * 15 14 12 17 17 C 1.39867 * 118.00063 * 0.48162 * 16 15 14 18 18 C 1.47964 * 120.07462 * 179.78229 * 17 16 15 19 19 C 1.34656 * 122.88223 * 185.72190 * 18 17 16 20 20 C 1.50705 * 124.74461 * 0.02562 * 19 18 17 21 21 O 1.42901 * 109.47059 * 145.22152 * 20 19 18 22 22 Si 1.86300 * 109.46834 * 265.21706 * 20 19 18 23 23 S 1.70626 * 110.50655 * 179.75221 * 19 18 17 24 24 C 1.75734 * 91.71210 * 0.22410 * 23 19 18 25 25 C 1.33099 * 109.79461 * 0.02562 * 24 23 19 26 26 N 1.33153 * 119.84627 * 359.50716 * 17 16 15 27 27 N 1.28356 * 122.10761 * 0.25659 * 26 17 16 28 28 C 1.52996 * 109.47113 * 60.00194 * 9 8 7 29 29 C 1.52995 * 109.46881 * 179.97438 * 5 1 2 30 30 H 1.08998 * 109.47411 * 59.99590 * 7 5 1 31 31 H 1.09001 * 109.46944 * 299.99875 * 7 5 1 32 32 H 1.09000 * 109.46809 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47264 * 60.00330 * 8 7 5 34 34 H 0.97001 * 120.00540 * 335.00501 * 11 9 8 35 35 H 1.08008 * 120.98735 * 0.02562 * 15 14 12 36 36 H 1.07995 * 121.00281 * 180.26437 * 16 15 14 37 37 H 1.08993 * 109.47344 * 25.21185 * 20 19 18 38 38 H 0.96696 * 113.99963 * 180.02562 * 21 20 19 39 39 H 1.48503 * 110.00096 * 178.68332 * 22 20 19 40 40 H 1.48500 * 109.99991 * 300.00066 * 22 20 19 41 41 H 1.07998 * 125.10181 * 179.97438 * 24 23 19 42 42 H 1.08002 * 123.12107 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47333 * 59.99710 * 28 9 8 44 44 H 1.08991 * 109.47119 * 179.97438 * 28 9 8 45 45 H 1.09002 * 109.47216 * 299.99691 * 29 5 1 46 46 H 1.08999 * 109.47179 * 59.99846 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4758 0.8238 5 6 -0.4896 -0.6925 -1.1996 6 1 -0.1263 -0.1786 -2.0895 7 6 0.0204 -2.1350 -1.1996 8 6 -0.4890 -2.8560 -2.4492 9 6 -2.0191 -2.8560 -2.4499 10 1 -2.3827 -3.3700 -1.5601 11 7 -2.5068 -3.5458 -3.6467 12 6 -3.7288 -4.1144 -3.6458 13 8 -4.4259 -4.0553 -2.6518 14 6 -4.2210 -4.8113 -4.8537 15 6 -5.4898 -5.4029 -4.8541 16 6 -5.9100 -6.0397 -6.0084 17 6 -5.0370 -6.0622 -7.1009 18 6 -5.4376 -6.7347 -8.3565 19 6 -4.6030 -6.8883 -9.4020 20 6 -3.1751 -6.4079 -9.4390 21 8 -2.3822 -7.3282 -10.1916 22 14 -3.1058 -4.7279 -10.2413 23 16 -5.3860 -7.7097 -10.6762 24 6 -6.8761 -7.8313 -9.7524 25 6 -6.7152 -7.2615 -8.5604 26 7 -3.8467 -5.4722 -7.0102 27 7 -3.4597 -4.8776 -5.9406 28 6 -2.5291 -1.4136 -2.4498 29 6 -2.0196 -0.6931 -1.1992 30 1 -0.3429 -2.6489 -0.3097 31 1 1.1104 -2.1349 -1.1996 32 1 -0.1260 -3.8837 -2.4490 33 1 -0.1253 -2.3420 -3.3389 34 1 -1.9503 -3.5935 -4.4398 35 1 -6.1237 -5.3598 -3.9806 36 1 -6.8814 -6.5083 -6.0630 37 1 -2.7877 -6.3412 -8.4224 38 1 -1.4494 -7.0818 -10.2569 39 1 -1.7072 -4.2290 -10.2553 40 1 -3.6313 -4.8053 -11.6280 41 1 -7.7860 -8.2976 -10.1001 42 1 -7.4984 -7.2143 -7.8183 43 1 -2.1654 -0.8995 -3.3395 44 1 -3.6190 -1.4136 -2.4507 45 1 -2.3826 -1.2073 -0.3093 46 1 -2.3833 0.3345 -1.1989 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081502_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:46 Heat of formation + Delta-G solvation = 140.941861 kcal Electronic energy + Delta-G solvation = -29646.868136 eV Core-core repulsion = 25556.026377 eV Total energy + Delta-G solvation = -4090.841759 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.57756 -43.11737 -41.65095 -40.06500 -39.23414 -38.32190 -36.11447 -35.14049 -34.61698 -33.97863 -32.34878 -31.25721 -28.47101 -27.19049 -26.15300 -25.98626 -25.35144 -24.20811 -23.55724 -23.10160 -21.47541 -21.27569 -21.20412 -20.35232 -19.90352 -19.66383 -18.92636 -18.91998 -18.36606 -17.88008 -17.77872 -17.34791 -17.24755 -16.92258 -16.50767 -16.41797 -16.11347 -16.10491 -15.61270 -15.55094 -15.33417 -15.25938 -14.92343 -14.80903 -14.74301 -14.51792 -14.43748 -14.19398 -14.07960 -13.76821 -13.51920 -13.26099 -13.15397 -12.68898 -12.38932 -12.26028 -12.16736 -12.13260 -11.76100 -11.43677 -11.35216 -10.12045 -9.88919 -5.53144 -1.76194 -1.20671 -1.14147 -0.63025 -0.08973 0.39274 0.42359 0.64468 0.67763 0.70400 0.74387 0.84345 0.96573 1.09661 1.38811 1.47681 1.58280 1.65998 1.78420 1.82134 1.97169 2.06222 2.20485 2.27499 2.37629 2.40566 2.46306 2.52478 2.65213 2.70527 2.78192 2.84918 2.89546 2.96847 3.06322 3.16274 3.22556 3.29583 3.50566 3.62398 3.64599 3.68511 3.79594 3.83001 4.02151 4.11847 4.22673 4.36538 4.52796 4.63140 5.18483 5.78794 5.90275 6.58107 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002312 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.191105 B =12108.176026 C =13172.189381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.437 0.563 3 H 0.437 0.563 4 H 0.434 0.566 5 C 0.023 3.977 6 H 0.144 0.856 7 C -0.137 4.137 8 C -0.128 4.128 9 C 0.140 3.860 10 H 0.098 0.902 11 N -0.712 5.712 12 C 0.588 3.412 13 O -0.522 6.522 14 C 0.002 3.998 15 C -0.054 4.054 16 C -0.111 4.111 17 C 0.173 3.827 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.054 4.054 21 O -0.541 6.541 22 Si 0.686 3.314 23 S 0.236 5.764 24 C -0.234 4.234 25 C -0.111 4.111 26 N -0.243 5.243 27 N -0.203 5.203 28 C -0.132 4.132 29 C -0.139 4.139 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.416 0.584 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.387 0.613 39 H -0.247 1.247 40 H -0.248 1.248 41 H 0.175 0.825 42 H 0.151 0.849 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.875 21.786 26.534 37.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.265 0.735 3 H 0.266 0.734 4 H 0.263 0.737 5 C -0.080 4.080 6 H 0.162 0.838 7 C -0.176 4.176 8 C -0.166 4.166 9 C 0.035 3.965 10 H 0.116 0.884 11 N -0.364 5.364 12 C 0.372 3.628 13 O -0.396 6.396 14 C -0.145 4.145 15 C -0.082 4.082 16 C -0.140 4.140 17 C 0.032 3.968 18 C -0.112 4.112 19 C -0.272 4.272 20 C -0.164 4.164 21 O -0.349 6.349 22 Si 0.584 3.416 23 S 0.504 5.496 24 C -0.370 4.370 25 C -0.140 4.140 26 N -0.088 5.088 27 N -0.049 5.049 28 C -0.171 4.171 29 C -0.177 4.177 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.253 0.747 35 H 0.183 0.817 36 H 0.181 0.819 37 H 0.135 0.865 38 H 0.235 0.765 39 H -0.171 1.171 40 H -0.172 1.172 41 H 0.192 0.808 42 H 0.168 0.832 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.880 21.776 24.143 36.184 hybrid contribution -0.539 -0.530 1.913 2.057 sum 15.341 21.246 26.056 36.955 Atomic orbital electron populations 1.42652 1.21162 1.20709 1.18856 0.73457 0.73398 0.73749 1.23600 0.99706 0.97449 0.87275 0.83804 1.22017 1.02759 0.90857 1.01942 1.21774 0.94408 1.03129 0.97323 1.21056 0.93090 0.92462 0.89920 0.88435 1.45756 1.17734 1.55882 1.17049 1.17514 0.81496 0.77804 0.85969 1.90852 1.56244 1.59318 1.33217 1.22503 0.94721 1.01697 0.95600 1.22358 0.94814 0.91653 0.99365 1.22430 1.01674 0.98077 0.91854 1.21077 0.90862 0.91738 0.93156 1.17001 0.94721 1.07275 0.92201 1.23715 0.99746 1.04615 0.99120 1.24693 0.87356 1.02407 1.01965 1.86514 1.24368 1.48545 1.75443 0.94301 0.85234 0.80163 0.81916 1.83695 1.00998 1.50452 1.14442 1.25803 1.03335 1.08707 0.99112 1.20011 0.96022 0.99838 0.98149 1.73149 1.13202 1.07090 1.15404 1.73092 1.27405 1.08950 0.95462 1.21956 1.03621 0.94957 0.96577 1.22055 0.89246 1.04089 1.02318 0.88915 0.88604 0.88658 0.89637 0.74692 0.81691 0.81917 0.86507 0.76459 1.17084 1.17200 0.80789 0.83180 0.90085 0.88926 0.88972 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 24.05 4.15 -4.66 -0.02 24.04 16 2 H 0.44 -17.22 8.96 -39.29 -0.35 -17.57 16 3 H 0.44 -17.16 8.96 -39.29 -0.35 -17.51 16 4 H 0.43 -16.78 8.90 -39.29 -0.35 -17.13 16 5 C 0.02 -0.75 3.02 -67.71 -0.20 -0.95 16 6 H 0.14 -4.61 8.14 -51.93 -0.42 -5.03 16 7 C -0.14 3.87 5.43 -26.73 -0.15 3.73 16 8 C -0.13 2.94 5.39 -26.73 -0.14 2.79 16 9 C 0.14 -2.73 2.45 -67.93 -0.17 -2.90 16 10 H 0.10 -1.76 7.58 -51.93 -0.39 -2.15 16 11 N -0.71 11.01 5.07 -54.74 -0.28 10.73 16 12 C 0.59 -6.68 7.77 -12.31 -0.10 -6.77 16 13 O -0.52 4.64 16.04 5.32 0.09 4.73 16 14 C 0.00 -0.02 6.83 -82.81 -0.57 -0.58 16 15 C -0.05 0.55 9.71 -38.88 -0.38 0.17 16 16 C -0.11 1.12 9.60 -38.93 -0.37 0.74 16 17 C 0.17 -1.37 6.80 -82.70 -0.56 -1.94 16 18 C -0.10 0.67 5.79 -106.64 -0.62 0.05 16 19 C -0.15 0.86 4.46 -35.57 -0.16 0.70 16 20 C -0.05 0.34 2.43 36.01 0.09 0.43 16 21 O -0.54 3.09 12.51 -35.23 -0.44 2.65 16 22 Si 0.69 -4.66 32.40 -169.99 -5.51 -10.17 16 23 S 0.24 -1.34 22.66 -107.50 -2.44 -3.78 16 24 C -0.23 1.76 11.20 28.94 0.32 2.09 16 25 C -0.11 0.90 9.60 -40.83 -0.39 0.51 16 26 N -0.24 1.88 7.36 33.37 0.25 2.13 16 27 N -0.20 1.86 10.73 33.33 0.36 2.22 16 28 C -0.13 2.82 5.50 -26.70 -0.15 2.68 16 29 C -0.14 3.79 5.43 -26.70 -0.15 3.64 16 30 H 0.09 -2.60 8.14 -51.93 -0.42 -3.03 16 31 H 0.10 -2.78 8.14 -51.93 -0.42 -3.20 16 32 H 0.09 -1.98 8.14 -51.93 -0.42 -2.41 16 33 H 0.09 -1.98 8.14 -51.93 -0.42 -2.40 16 34 H 0.42 -6.67 7.95 -40.82 -0.32 -7.00 16 35 H 0.17 -1.90 7.71 -52.48 -0.40 -2.30 16 36 H 0.16 -2.04 6.69 -52.49 -0.35 -2.39 16 37 H 0.12 -0.81 5.31 -51.93 -0.28 -1.08 16 38 H 0.39 -3.73 8.74 45.56 0.40 -3.34 16 39 H -0.25 1.45 7.11 56.52 0.40 1.85 16 40 H -0.25 0.94 7.11 56.52 0.40 1.34 16 41 H 0.17 -1.65 8.06 -52.49 -0.42 -2.07 16 42 H 0.15 -1.63 6.83 -52.49 -0.36 -1.99 16 43 H 0.08 -1.74 8.14 -51.93 -0.42 -2.16 16 44 H 0.09 -1.63 8.14 -51.93 -0.42 -2.05 16 45 H 0.09 -2.50 8.14 -51.93 -0.42 -2.92 16 46 H 0.09 -2.61 8.14 -51.93 -0.42 -3.03 16 LS Contribution 385.51 15.07 5.81 5.81 Total: 1.00 -42.78 385.51 -12.06 -54.84 By element: Atomic # 1 Polarization: -91.39 SS G_CDS: -6.19 Total: -97.57 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -3.68 Total: 4.38 kcal Atomic # 7 Polarization: 38.81 SS G_CDS: 0.31 Total: 39.11 kcal Atomic # 8 Polarization: 7.73 SS G_CDS: -0.36 Total: 7.38 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: -5.51 Total: -10.17 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.44 Total: -3.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -42.78 -12.06 -54.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.778 kcal (2) G-P(sol) polarization free energy of solvation -42.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds