Wall clock time and date at job start Mon Mar 8 2021 09:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00895 * 1 3 3 H 1.00902 * 109.47266 * 1 2 4 4 H 1.00904 * 109.47295 * 239.99297 * 1 2 3 5 5 C 1.46911 * 109.46889 * 119.99786 * 1 2 3 6 6 H 1.09002 * 109.46944 * 299.99820 * 5 1 2 7 7 C 1.52996 * 109.47122 * 59.99969 * 5 1 2 8 8 C 1.52998 * 109.47028 * 180.02562 * 7 5 1 9 9 C 1.53005 * 109.47002 * 299.99858 * 8 7 5 10 10 H 1.08998 * 109.46811 * 300.00036 * 9 8 7 11 11 N 1.46499 * 109.46769 * 179.97438 * 9 8 7 12 12 C 1.34775 * 119.99586 * 155.00051 * 11 9 8 13 13 O 1.21549 * 120.00296 * 359.97438 * 12 11 9 14 14 C 1.47887 * 119.99956 * 180.02562 * 12 11 9 15 15 C 1.39999 * 120.06487 * 179.97438 * 14 12 11 16 16 C 1.38363 * 118.02913 * 179.76786 * 15 14 12 17 17 C 1.39867 * 118.00063 * 0.48162 * 16 15 14 18 18 C 1.47964 * 120.07462 * 179.78229 * 17 16 15 19 19 C 1.34656 * 122.88223 * 185.72190 * 18 17 16 20 20 C 1.50705 * 124.74461 * 0.02562 * 19 18 17 21 21 O 1.42901 * 109.47059 * 145.22152 * 20 19 18 22 22 Si 1.86300 * 109.46834 * 265.21706 * 20 19 18 23 23 S 1.70626 * 110.50655 * 179.75221 * 19 18 17 24 24 C 1.75734 * 91.71210 * 0.22410 * 23 19 18 25 25 C 1.33099 * 109.79461 * 0.02562 * 24 23 19 26 26 N 1.33153 * 119.84627 * 359.50716 * 17 16 15 27 27 N 1.28356 * 122.10761 * 0.25659 * 26 17 16 28 28 C 1.52996 * 109.47113 * 60.00194 * 9 8 7 29 29 C 1.52995 * 109.46881 * 179.97438 * 5 1 2 30 30 H 1.08998 * 109.47411 * 59.99590 * 7 5 1 31 31 H 1.09001 * 109.46944 * 299.99875 * 7 5 1 32 32 H 1.09000 * 109.46809 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47264 * 60.00330 * 8 7 5 34 34 H 0.97001 * 120.00540 * 335.00501 * 11 9 8 35 35 H 1.08008 * 120.98735 * 0.02562 * 15 14 12 36 36 H 1.07995 * 121.00281 * 180.26437 * 16 15 14 37 37 H 1.08993 * 109.47344 * 25.21185 * 20 19 18 38 38 H 0.96696 * 113.99963 * 180.02562 * 21 20 19 39 39 H 1.48503 * 110.00096 * 178.68332 * 22 20 19 40 40 H 1.48500 * 109.99991 * 300.00066 * 22 20 19 41 41 H 1.07998 * 125.10181 * 179.97438 * 24 23 19 42 42 H 1.08002 * 123.12107 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47333 * 59.99710 * 28 9 8 44 44 H 1.08991 * 109.47119 * 179.97438 * 28 9 8 45 45 H 1.09002 * 109.47216 * 299.99691 * 29 5 1 46 46 H 1.08999 * 109.47179 * 59.99846 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4758 0.8238 5 6 -0.4896 -0.6925 -1.1996 6 1 -0.1263 -0.1786 -2.0895 7 6 0.0204 -2.1350 -1.1996 8 6 -0.4890 -2.8560 -2.4492 9 6 -2.0191 -2.8560 -2.4499 10 1 -2.3827 -3.3700 -1.5601 11 7 -2.5068 -3.5458 -3.6467 12 6 -3.7288 -4.1144 -3.6458 13 8 -4.4259 -4.0553 -2.6518 14 6 -4.2210 -4.8113 -4.8537 15 6 -5.4898 -5.4029 -4.8541 16 6 -5.9100 -6.0397 -6.0084 17 6 -5.0370 -6.0622 -7.1009 18 6 -5.4376 -6.7347 -8.3565 19 6 -4.6030 -6.8883 -9.4020 20 6 -3.1751 -6.4079 -9.4390 21 8 -2.3822 -7.3282 -10.1916 22 14 -3.1058 -4.7279 -10.2413 23 16 -5.3860 -7.7097 -10.6762 24 6 -6.8761 -7.8313 -9.7524 25 6 -6.7152 -7.2615 -8.5604 26 7 -3.8467 -5.4722 -7.0102 27 7 -3.4597 -4.8776 -5.9406 28 6 -2.5291 -1.4136 -2.4498 29 6 -2.0196 -0.6931 -1.1992 30 1 -0.3429 -2.6489 -0.3097 31 1 1.1104 -2.1349 -1.1996 32 1 -0.1260 -3.8837 -2.4490 33 1 -0.1253 -2.3420 -3.3389 34 1 -1.9503 -3.5935 -4.4398 35 1 -6.1237 -5.3598 -3.9806 36 1 -6.8814 -6.5083 -6.0630 37 1 -2.7877 -6.3412 -8.4224 38 1 -1.4494 -7.0818 -10.2569 39 1 -1.7072 -4.2290 -10.2553 40 1 -3.6313 -4.8053 -11.6280 41 1 -7.7860 -8.2976 -10.1001 42 1 -7.4984 -7.2143 -7.8183 43 1 -2.1654 -0.8995 -3.3395 44 1 -3.6190 -1.4136 -2.4507 45 1 -2.3826 -1.2073 -0.3093 46 1 -2.3833 0.3345 -1.1989 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:45 Heat of formation + Delta-G solvation = 106.854740 kcal Electronic energy + Delta-G solvation = -29648.346264 eV Core-core repulsion = 25556.026377 eV Total energy + Delta-G solvation = -4092.319887 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.44234 -41.36886 -40.35376 -39.37653 -37.80894 -37.42782 -34.73598 -34.37079 -33.68258 -31.99122 -31.67722 -29.51772 -27.69484 -26.33988 -25.25110 -24.17471 -23.67032 -23.48476 -22.02542 -21.51691 -20.64520 -19.56958 -18.98431 -18.48198 -18.36400 -18.28492 -18.16745 -17.47359 -17.21053 -17.11701 -16.77274 -16.31813 -15.96078 -15.67175 -15.50010 -15.11956 -14.98858 -14.88193 -14.54802 -14.31147 -14.21225 -14.11807 -13.92468 -13.65064 -13.45924 -13.34826 -13.17050 -12.90388 -12.62089 -12.46517 -12.24184 -12.22113 -11.75631 -11.67743 -11.52773 -11.49288 -11.44971 -11.28843 -11.08919 -10.76410 -10.21968 -9.57665 -9.32127 -5.04748 -1.04576 -0.37449 -0.01297 0.46323 0.97894 1.17841 1.23976 1.44905 1.57261 1.76061 1.87118 1.87968 2.55529 2.57638 3.06898 3.08175 3.12230 3.27083 3.38594 3.55893 3.64810 3.71753 3.72930 3.78675 3.83614 3.91183 3.96453 4.12658 4.23046 4.30570 4.38166 4.38578 4.48925 4.51459 4.58258 4.61158 4.64874 4.71547 4.72777 4.88846 4.93348 5.00353 5.02798 5.08000 5.09975 5.16576 5.20019 5.24916 5.28360 5.43371 6.25237 6.46169 6.91408 7.31051 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002312 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.191105 B =12108.176026 C =13172.189381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.157 0.843 7 C -0.136 4.136 8 C -0.127 4.127 9 C 0.131 3.869 10 H 0.078 0.922 11 N -0.700 5.700 12 C 0.582 3.418 13 O -0.555 6.555 14 C -0.001 4.001 15 C -0.059 4.059 16 C -0.102 4.102 17 C 0.154 3.846 18 C -0.090 4.090 19 C -0.173 4.173 20 C -0.054 4.054 21 O -0.559 6.559 22 Si 0.740 3.260 23 S 0.179 5.821 24 C -0.227 4.227 25 C -0.112 4.112 26 N -0.257 5.257 27 N -0.208 5.208 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.121 0.879 38 H 0.400 0.600 39 H -0.257 1.257 40 H -0.293 1.293 41 H 0.194 0.806 42 H 0.183 0.817 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.908 23.671 29.215 40.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.273 0.727 5 C -0.054 4.054 6 H 0.174 0.826 7 C -0.174 4.174 8 C -0.166 4.166 9 C 0.027 3.973 10 H 0.096 0.904 11 N -0.351 5.351 12 C 0.365 3.635 13 O -0.432 6.432 14 C -0.148 4.148 15 C -0.087 4.087 16 C -0.130 4.130 17 C 0.012 3.988 18 C -0.106 4.106 19 C -0.294 4.294 20 C -0.164 4.164 21 O -0.369 6.369 22 Si 0.642 3.358 23 S 0.447 5.553 24 C -0.363 4.363 25 C -0.140 4.140 26 N -0.102 5.102 27 N -0.054 5.054 28 C -0.172 4.172 29 C -0.175 4.175 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.256 0.744 35 H 0.194 0.806 36 H 0.207 0.793 37 H 0.138 0.862 38 H 0.251 0.749 39 H -0.182 1.182 40 H -0.220 1.220 41 H 0.211 0.789 42 H 0.200 0.800 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.984 23.697 26.857 39.640 hybrid contribution -0.863 -1.111 1.138 1.809 sum 16.121 22.586 27.995 39.418 Atomic orbital electron populations 1.42239 1.22107 1.20914 1.16701 0.71723 0.71847 0.72729 1.22871 0.96173 0.96089 0.90286 0.82562 1.21965 1.03857 0.92593 0.99010 1.21753 0.91380 1.02784 1.00657 1.21425 0.95608 0.92950 0.87267 0.90419 1.45938 1.16229 1.54487 1.18456 1.17500 0.82546 0.78207 0.85206 1.90824 1.57365 1.60983 1.34038 1.22872 0.94988 1.01143 0.95791 1.22581 0.94869 0.91470 0.99821 1.22702 1.02238 0.97233 0.90867 1.21125 0.91476 0.92685 0.93510 1.17264 0.94976 1.06278 0.92064 1.23813 1.00193 1.05952 0.99450 1.24758 0.87382 1.02275 1.02018 1.86487 1.25616 1.49167 1.75631 0.93695 0.83471 0.79572 0.79107 1.83789 1.03311 1.51989 1.16215 1.26028 1.02700 1.08724 0.98824 1.20370 0.96194 0.98925 0.98550 1.73049 1.13684 1.07389 1.16075 1.73078 1.27566 1.09317 0.95481 1.21861 1.00935 0.94316 1.00064 1.21948 0.92749 1.03824 0.98963 0.88781 0.86574 0.91166 0.89081 0.74416 0.80557 0.79259 0.86152 0.74903 1.18201 1.21972 0.78919 0.80040 0.89897 0.93436 0.89065 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.67 4.15 -168.67 -0.70 46.97 16 2 H 0.45 -36.54 8.96 -89.70 -0.80 -37.34 16 3 H 0.45 -36.18 8.96 -89.69 -0.80 -36.98 16 4 H 0.44 -34.89 8.90 -89.69 -0.80 -35.69 16 5 C 0.05 -3.33 3.02 44.91 0.14 -3.19 16 6 H 0.16 -10.29 8.14 -2.39 -0.02 -10.31 16 7 C -0.14 7.68 5.43 30.59 0.17 7.84 16 8 C -0.13 5.61 5.39 30.60 0.16 5.77 16 9 C 0.13 -4.72 2.45 44.99 0.11 -4.61 16 10 H 0.08 -2.49 7.58 -2.39 -0.02 -2.51 16 11 N -0.70 19.28 5.07 -445.37 -2.26 17.02 16 12 C 0.58 -11.23 7.77 86.80 0.67 -10.56 16 13 O -0.55 7.80 16.04 -3.87 -0.06 7.74 16 14 C 0.00 0.01 6.83 41.97 0.29 0.30 16 15 C -0.06 1.11 9.71 22.73 0.22 1.33 16 16 C -0.10 1.97 9.60 22.69 0.22 2.18 16 17 C 0.15 -2.22 6.80 41.92 0.29 -1.93 16 18 C -0.09 1.11 5.79 -21.17 -0.12 0.99 16 19 C -0.17 1.54 4.46 24.87 0.11 1.65 16 20 C -0.05 0.54 2.43 71.24 0.17 0.71 16 21 O -0.56 4.79 12.51 -148.98 -1.86 2.93 16 22 Si 0.74 -7.93 32.40 68.60 2.22 -5.71 16 23 S 0.18 -1.53 22.66 -56.49 -1.28 -2.81 16 24 C -0.23 3.19 11.20 66.67 0.75 3.93 16 25 C -0.11 1.77 9.60 21.47 0.21 1.98 16 26 N -0.26 3.42 7.36 -48.35 -0.36 3.07 16 27 N -0.21 3.30 10.73 -48.47 -0.52 2.78 16 28 C -0.13 5.31 5.50 30.61 0.17 5.48 16 29 C -0.14 7.36 5.43 30.61 0.17 7.53 16 30 H 0.09 -5.26 8.14 -2.39 -0.02 -5.28 16 31 H 0.12 -6.90 8.14 -2.39 -0.02 -6.92 16 32 H 0.07 -2.71 8.14 -2.39 -0.02 -2.73 16 33 H 0.09 -4.10 8.14 -2.39 -0.02 -4.12 16 34 H 0.42 -12.10 7.95 -92.71 -0.74 -12.84 16 35 H 0.18 -3.78 7.71 -2.91 -0.02 -3.81 16 36 H 0.19 -4.88 6.69 -2.91 -0.02 -4.90 16 37 H 0.12 -1.35 5.31 -2.39 -0.01 -1.36 16 38 H 0.40 -6.68 8.74 -74.06 -0.65 -7.33 16 39 H -0.26 2.44 7.11 99.48 0.71 3.15 16 40 H -0.29 1.00 7.11 99.48 0.71 1.71 16 41 H 0.19 -3.59 8.06 -2.91 -0.02 -3.61 16 42 H 0.18 -4.17 6.83 -2.91 -0.02 -4.19 16 43 H 0.08 -3.37 8.14 -2.39 -0.02 -3.39 16 44 H 0.05 -1.44 8.14 -2.39 -0.02 -1.46 16 45 H 0.09 -4.85 8.14 -2.39 -0.02 -4.87 16 46 H 0.11 -6.02 8.14 -2.39 -0.02 -6.04 16 Total: 1.00 -95.67 385.51 -3.77 -99.45 By element: Atomic # 1 Polarization: -188.16 SS G_CDS: -2.67 Total: -190.83 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 3.71 Total: 19.40 kcal Atomic # 7 Polarization: 73.67 SS G_CDS: -3.83 Total: 69.84 kcal Atomic # 8 Polarization: 12.59 SS G_CDS: -1.93 Total: 10.66 kcal Atomic # 14 Polarization: -7.93 SS G_CDS: 2.22 Total: -5.71 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -1.28 Total: -2.81 kcal Total: -95.67 -3.77 -99.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.302 kcal (2) G-P(sol) polarization free energy of solvation -95.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds