Wall clock time and date at job start Mon Mar 8 2021 09:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00892 * 1 3 3 H 1.00901 * 109.47136 * 1 2 4 4 H 1.00894 * 109.47621 * 240.00238 * 1 2 3 5 5 C 1.46905 * 109.47420 * 119.99736 * 1 2 3 6 6 H 1.08996 * 109.47026 * 300.00332 * 5 1 2 7 7 C 1.53000 * 109.46583 * 60.00173 * 5 1 2 8 8 C 1.53002 * 109.46759 * 179.97438 * 7 5 1 9 9 C 1.53004 * 109.47188 * 300.00381 * 8 7 5 10 10 H 1.09004 * 109.46824 * 299.99402 * 9 8 7 11 11 N 1.46502 * 109.47140 * 180.02562 * 9 8 7 12 12 C 1.34774 * 120.00092 * 154.99696 * 11 9 8 13 13 O 1.21554 * 120.00112 * 359.97438 * 12 11 9 14 14 C 1.47851 * 119.99684 * 179.97438 * 12 11 9 15 15 C 1.39508 * 119.97059 * 180.02562 * 14 12 11 16 16 N 1.31940 * 120.01596 * 180.02562 * 15 14 12 17 17 C 1.33072 * 119.97034 * 0.02562 * 16 15 14 18 18 C 1.47907 * 120.02704 * 179.97438 * 17 16 15 19 19 C 1.34699 * 122.88862 * 5.99675 * 18 17 16 20 20 C 1.50700 * 124.75161 * 0.03697 * 19 18 17 21 21 O 1.42894 * 109.47218 * 145.20283 * 20 19 18 22 22 Si 1.86305 * 109.47125 * 265.20449 * 20 19 18 23 23 S 1.70629 * 110.49650 * 179.77468 * 19 18 17 24 24 C 1.75728 * 91.71919 * 0.22517 * 23 19 18 25 25 C 1.33077 * 109.80533 * 0.02562 * 24 23 19 26 26 C 1.40112 * 119.94690 * 0.24997 * 17 16 15 27 27 N 1.31475 * 119.98241 * 359.47871 * 26 17 16 28 28 C 1.52991 * 109.47226 * 59.99675 * 9 8 7 29 29 C 1.52991 * 109.47477 * 299.99960 * 28 9 8 30 30 H 1.08996 * 109.47310 * 60.00332 * 7 5 1 31 31 H 1.08993 * 109.47075 * 299.99828 * 7 5 1 32 32 H 1.09001 * 109.47406 * 180.02562 * 8 7 5 33 33 H 1.09009 * 109.47224 * 59.99872 * 8 7 5 34 34 H 0.97003 * 120.00024 * 334.99818 * 11 9 8 35 35 H 1.08000 * 119.99226 * 0.04213 * 15 14 12 36 36 H 1.09000 * 109.46941 * 25.19878 * 20 19 18 37 37 H 0.96702 * 114.00078 * 60.00264 * 21 20 19 38 38 H 1.48502 * 109.99877 * 179.97438 * 22 20 19 39 39 H 1.48497 * 109.99761 * 301.31783 * 22 20 19 40 40 H 1.07997 * 125.09528 * 179.97438 * 24 23 19 41 41 H 1.08002 * 123.11764 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.00980 * 179.72867 * 26 17 16 43 43 H 1.09009 * 109.47169 * 60.00520 * 28 9 8 44 44 H 1.09004 * 109.47004 * 179.97438 * 28 9 8 45 45 H 1.09001 * 109.47549 * 300.00145 * 29 28 9 46 46 H 1.09001 * 109.47581 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8238 5 6 -0.4898 -0.6924 -1.1995 6 1 -0.1264 -0.1786 -2.0894 7 6 0.0202 -2.1350 -1.1994 8 6 -0.4903 -2.8564 -2.4484 9 6 -2.0204 -2.8562 -2.4477 10 1 -2.3834 -3.3700 -1.5575 11 7 -2.5093 -3.5475 -3.6433 12 6 -3.7312 -4.1160 -3.6407 13 8 -4.4276 -4.0556 -2.6462 14 6 -4.2248 -4.8132 -4.8475 15 6 -5.4899 -5.4010 -4.8443 16 7 -5.9310 -6.0238 -5.9206 17 6 -5.1684 -6.0914 -7.0090 18 6 -5.6614 -6.7898 -8.2160 19 6 -6.9136 -7.2750 -8.3201 20 6 -7.9653 -7.1760 -7.2453 21 8 -9.2495 -7.0093 -7.8494 22 14 -7.9572 -8.7336 -6.2232 23 16 -7.1446 -8.0111 -9.8420 24 6 -5.4952 -7.6476 -10.3272 25 6 -4.8670 -7.0067 -9.3446 26 6 -3.8956 -5.5056 -7.0087 27 7 -3.4601 -4.8809 -5.9369 28 6 -2.5303 -1.4138 -2.4477 29 6 -2.0198 -0.6924 -1.1988 30 1 -0.3431 -2.6488 -0.3095 31 1 1.1102 -2.1349 -1.1995 32 1 -0.1274 -3.8842 -2.4482 33 1 -0.1274 -2.3426 -3.3387 34 1 -1.9535 -3.5961 -4.4368 35 1 -6.1086 -5.3460 -3.9608 36 1 -7.7510 -6.3203 -6.6051 37 1 -9.5065 -7.7355 -8.4340 38 1 -8.9897 -8.6482 -5.1592 39 1 -8.2166 -9.9112 -7.0900 40 1 -5.0568 -7.9063 -11.2797 41 1 -3.8399 -6.6802 -9.4151 42 1 -3.2740 -5.5637 -7.8900 43 1 -2.1673 -0.9001 -3.3380 44 1 -3.6203 -1.4137 -2.4477 45 1 -2.3828 -1.2061 -0.3086 46 1 -2.3827 0.3354 -1.1990 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:17 Heat of formation + Delta-G solvation = 97.414782 kcal Electronic energy + Delta-G solvation = -29529.846247 eV Core-core repulsion = 25437.117013 eV Total energy + Delta-G solvation = -4092.729234 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.54090 -41.36553 -40.34522 -39.39851 -37.91712 -37.40287 -35.75732 -34.31294 -33.00508 -31.99577 -31.57277 -29.52336 -27.91243 -25.73605 -25.61287 -24.18055 -23.82748 -23.42876 -21.92183 -21.51512 -20.74747 -19.57385 -19.22649 -18.84811 -18.46338 -18.27874 -17.57947 -17.44840 -17.19878 -17.06463 -16.66779 -16.40594 -15.99655 -15.82604 -15.68369 -15.33722 -15.10614 -14.95421 -14.69561 -14.36147 -14.16821 -14.14233 -13.79962 -13.64893 -13.38239 -13.35231 -13.05573 -12.89923 -12.70272 -12.57315 -12.47443 -12.24163 -12.20937 -11.83960 -11.67230 -11.58385 -11.43288 -11.16695 -10.94298 -10.31855 -10.19980 -9.62463 -9.24291 -5.10365 -1.12737 -0.14489 -0.00670 0.39354 0.89021 1.15791 1.27497 1.41839 1.57562 1.72757 1.88901 1.90186 2.66345 2.70113 2.80727 3.11921 3.17743 3.22753 3.26947 3.46867 3.59416 3.67878 3.72495 3.82568 3.87214 3.92920 3.97555 4.12768 4.23427 4.26054 4.33208 4.37737 4.50054 4.50709 4.59384 4.63077 4.64803 4.72490 4.88426 4.91452 4.99890 5.07751 5.08900 5.09822 5.14986 5.20855 5.24728 5.28707 5.43816 5.88863 6.20913 6.25339 6.49578 6.97141 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.002106 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.464885 B =13294.234912 C =14053.396266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.157 0.843 7 C -0.136 4.136 8 C -0.125 4.125 9 C 0.131 3.869 10 H 0.076 0.924 11 N -0.699 5.699 12 C 0.580 3.420 13 O -0.558 6.558 14 C 0.000 4.000 15 C 0.116 3.884 16 N -0.458 5.458 17 C 0.171 3.829 18 C -0.087 4.087 19 C -0.210 4.210 20 C -0.054 4.054 21 O -0.544 6.544 22 Si 0.744 3.256 23 S 0.168 5.832 24 C -0.216 4.216 25 C -0.109 4.109 26 C 0.074 3.926 27 N -0.401 5.401 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.419 0.581 35 H 0.187 0.813 36 H 0.151 0.849 37 H 0.378 0.622 38 H -0.281 1.281 39 H -0.273 1.273 40 H 0.197 0.803 41 H 0.187 0.813 42 H 0.213 0.787 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.382 23.809 21.208 43.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.273 0.727 5 C -0.054 4.054 6 H 0.175 0.825 7 C -0.175 4.175 8 C -0.164 4.164 9 C 0.027 3.973 10 H 0.094 0.906 11 N -0.350 5.350 12 C 0.364 3.636 13 O -0.436 6.436 14 C -0.139 4.139 15 C -0.044 4.044 16 N -0.174 5.174 17 C 0.030 3.970 18 C -0.103 4.103 19 C -0.331 4.331 20 C -0.164 4.164 21 O -0.352 6.352 22 Si 0.645 3.355 23 S 0.435 5.565 24 C -0.351 4.351 25 C -0.138 4.138 26 C -0.091 4.091 27 N -0.118 5.118 28 C -0.172 4.172 29 C -0.175 4.175 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.256 0.744 35 H 0.204 0.796 36 H 0.168 0.832 37 H 0.227 0.773 38 H -0.207 1.207 39 H -0.198 1.198 40 H 0.214 0.786 41 H 0.204 0.796 42 H 0.229 0.771 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 27.180 22.907 21.667 41.629 hybrid contribution -0.191 0.268 -0.687 0.762 sum 26.989 23.175 20.980 41.300 Atomic orbital electron populations 1.42237 1.22117 1.20905 1.16707 0.71683 0.71880 0.72743 1.22867 0.96006 0.96198 0.90289 0.82523 1.21973 1.03913 0.92487 0.99078 1.21740 0.91170 1.02855 1.00605 1.21410 0.95714 0.92748 0.87409 0.90572 1.45881 1.16219 1.54480 1.18392 1.17569 0.82542 0.78198 0.85247 1.90830 1.57508 1.61113 1.34141 1.22108 0.94569 1.02245 0.95004 1.23936 0.93854 0.89808 0.96793 1.68345 1.33770 1.15499 0.99742 1.20773 0.91938 0.92886 0.91395 1.17372 0.93351 1.04852 0.94699 1.24892 1.00463 1.05456 1.02308 1.25226 0.79841 1.14310 0.96992 1.86676 1.34412 1.48799 1.65291 0.93723 0.88509 0.73282 0.79972 1.83427 1.13853 1.53500 1.05675 1.25928 0.96055 1.07476 1.05674 1.20406 1.02462 1.00341 0.90548 1.24235 0.93846 0.93138 0.97926 1.68317 1.32879 1.11891 0.98674 1.21847 1.00759 0.94545 1.00043 1.21937 0.92918 1.03726 0.98962 0.88846 0.86416 0.90977 0.89039 0.74375 0.79581 0.83180 0.77273 1.20737 1.19819 0.78635 0.79600 0.77052 0.89967 0.93768 0.89140 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.63 4.15 -168.67 -0.70 46.93 16 2 H 0.45 -36.62 8.96 -89.70 -0.80 -37.42 16 3 H 0.45 -36.08 8.96 -89.69 -0.80 -36.88 16 4 H 0.44 -34.81 8.90 -89.70 -0.80 -35.61 16 5 C 0.05 -3.37 3.03 44.92 0.14 -3.23 16 6 H 0.16 -10.34 8.14 -2.39 -0.02 -10.36 16 7 C -0.14 7.73 5.43 30.60 0.17 7.90 16 8 C -0.13 5.59 5.39 30.60 0.16 5.75 16 9 C 0.13 -4.71 2.45 44.99 0.11 -4.60 16 10 H 0.08 -2.41 7.58 -2.38 -0.02 -2.43 16 11 N -0.70 19.44 5.07 -445.40 -2.26 17.18 16 12 C 0.58 -10.91 7.77 86.79 0.67 -10.23 16 13 O -0.56 7.14 15.99 -3.89 -0.06 7.08 16 14 C 0.00 0.00 6.75 41.78 0.28 0.28 16 15 C 0.12 -1.69 10.76 84.98 0.91 -0.77 16 16 N -0.46 5.87 6.32 -183.28 -1.16 4.71 16 17 C 0.17 -2.61 6.73 41.97 0.28 -2.33 16 18 C -0.09 1.24 5.79 -21.17 -0.12 1.12 16 19 C -0.21 2.26 4.47 24.87 0.11 2.37 16 20 C -0.05 0.44 2.44 71.24 0.17 0.61 16 21 O -0.54 2.96 12.76 -148.98 -1.90 1.05 16 22 Si 0.74 -6.32 32.40 68.60 2.22 -4.10 16 23 S 0.17 -2.15 22.13 -56.49 -1.25 -3.40 16 24 C -0.22 3.76 11.19 66.66 0.75 4.51 16 25 C -0.11 2.06 9.60 21.47 0.21 2.27 16 26 C 0.07 -1.49 10.68 85.20 0.91 -0.59 16 27 N -0.40 7.83 9.69 -183.49 -1.78 6.06 16 28 C -0.13 5.25 5.49 30.59 0.17 5.41 16 29 C -0.14 7.32 5.43 30.59 0.17 7.49 16 30 H 0.09 -5.23 8.14 -2.39 -0.02 -5.25 16 31 H 0.12 -7.06 8.14 -2.39 -0.02 -7.08 16 32 H 0.07 -2.85 8.14 -2.39 -0.02 -2.87 16 33 H 0.09 -4.19 8.14 -2.38 -0.02 -4.21 16 34 H 0.42 -12.54 7.94 -92.71 -0.74 -13.27 16 35 H 0.19 -2.95 7.63 -2.91 -0.02 -2.97 16 36 H 0.15 -1.12 5.31 -2.39 -0.01 -1.13 16 37 H 0.38 -4.03 7.98 -74.06 -0.59 -4.62 16 38 H -0.28 0.67 7.11 99.48 0.71 1.37 16 39 H -0.27 1.44 7.11 99.48 0.71 2.14 16 40 H 0.20 -4.32 8.06 -2.91 -0.02 -4.34 16 41 H 0.19 -4.93 6.79 -2.91 -0.02 -4.95 16 42 H 0.21 -5.84 6.61 -2.91 -0.02 -5.86 16 43 H 0.08 -3.31 8.14 -2.38 -0.02 -3.33 16 44 H 0.04 -1.29 8.14 -2.38 -0.02 -1.31 16 45 H 0.09 -4.75 8.14 -2.39 -0.02 -4.77 16 46 H 0.11 -5.87 8.14 -2.39 -0.02 -5.89 16 Total: 1.00 -95.16 384.11 -4.41 -99.57 By element: Atomic # 1 Polarization: -188.43 SS G_CDS: -2.61 Total: -191.04 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.09 Total: 15.96 kcal Atomic # 7 Polarization: 80.77 SS G_CDS: -5.89 Total: 74.88 kcal Atomic # 8 Polarization: 10.10 SS G_CDS: -1.96 Total: 8.13 kcal Atomic # 14 Polarization: -6.32 SS G_CDS: 2.22 Total: -4.10 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -1.25 Total: -3.40 kcal Total: -95.16 -4.41 -99.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.981 kcal (2) G-P(sol) polarization free energy of solvation -95.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds