Wall clock time and date at job start Mon Mar 8 2021 09:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00898 * 109.46909 * 1 2 4 4 H 1.00902 * 109.47409 * 240.00162 * 1 2 3 5 5 C 1.46901 * 109.47159 * 120.00111 * 1 2 3 6 6 H 1.08987 * 109.47245 * 180.02562 * 5 1 2 7 7 C 1.53008 * 109.46890 * 300.00334 * 5 1 2 8 8 C 1.53000 * 109.46952 * 179.97438 * 7 5 1 9 9 C 1.53005 * 109.47026 * 299.99978 * 8 7 5 10 10 H 1.09000 * 109.46690 * 299.99750 * 9 8 7 11 11 N 1.46502 * 109.46760 * 180.02562 * 9 8 7 12 12 C 1.34774 * 120.00191 * 84.99911 * 11 9 8 13 13 O 1.21588 * 120.00001 * 0.02562 * 12 11 9 14 14 C 1.47579 * 120.00334 * 179.97438 * 12 11 9 15 15 C 1.40143 * 120.85022 * 180.02562 * 14 12 11 16 16 N 1.31906 * 119.03297 * 179.97438 * 15 14 12 17 17 C 1.32878 * 120.88094 * 359.97438 * 16 15 14 18 18 C 1.47805 * 119.06816 * 180.02562 * 17 16 15 19 19 C 1.34754 * 122.89321 * 312.35333 * 18 17 16 20 20 C 1.50700 * 124.75771 * 359.96916 * 19 18 17 21 21 O 1.42894 * 109.46902 * 321.53215 * 20 19 18 22 22 Si 1.86305 * 109.47042 * 201.53121 * 20 19 18 23 23 S 1.70633 * 110.48722 * 179.97438 * 19 18 17 24 24 C 1.75721 * 91.72795 * 0.02562 * 23 19 18 25 25 C 1.33047 * 109.82166 * 359.72332 * 24 23 19 26 26 N 1.32883 * 121.86896 * 359.97438 * 17 16 15 27 27 C 1.31903 * 120.87794 * 0.02562 * 26 17 16 28 28 C 1.53000 * 109.47432 * 60.00121 * 9 8 7 29 29 C 1.53000 * 109.46916 * 299.99945 * 28 9 8 30 30 H 1.08997 * 109.46482 * 299.99906 * 7 5 1 31 31 H 1.08998 * 109.46912 * 59.99633 * 7 5 1 32 32 H 1.08997 * 109.47356 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47182 * 59.99427 * 8 7 5 34 34 H 0.97000 * 119.99825 * 264.99542 * 11 9 8 35 35 H 1.07997 * 120.48674 * 359.70133 * 15 14 12 36 36 H 1.09002 * 109.46947 * 81.52947 * 20 19 18 37 37 H 0.96703 * 114.00034 * 300.00231 * 21 20 19 38 38 H 1.48502 * 109.99618 * 58.67880 * 22 20 19 39 39 H 1.48500 * 109.99683 * 179.97438 * 22 20 19 40 40 H 1.07997 * 125.09169 * 180.02562 * 24 23 19 41 41 H 1.08000 * 123.12464 * 180.27768 * 25 24 23 42 42 H 1.08001 * 120.48307 * 179.97438 * 27 26 17 43 43 H 1.08999 * 109.47166 * 59.99406 * 28 9 8 44 44 H 1.08991 * 109.47227 * 180.02562 * 28 9 8 45 45 H 1.08997 * 109.47356 * 179.97438 * 29 28 9 46 46 H 1.09000 * 109.47182 * 300.00357 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4897 -0.6925 -1.1994 6 1 -1.5796 -0.6921 -1.1997 7 6 0.0204 0.0287 -2.4487 8 6 -0.4890 -0.6929 -3.6979 9 6 0.0215 -2.1353 -3.6975 10 1 1.1115 -2.1348 -3.6973 11 7 -0.4659 -2.8260 -4.8940 12 6 0.2116 -2.7231 -6.0546 13 8 1.2275 -2.0573 -6.1084 14 6 -0.2790 -3.4193 -7.2598 15 6 0.4117 -3.3249 -8.4755 16 7 -0.0587 -3.9624 -9.5302 17 6 -1.1701 -4.6863 -9.4500 18 6 -1.6609 -5.3845 -10.6566 19 6 -1.7679 -4.7829 -11.8577 20 6 -1.4107 -3.3450 -12.1332 21 8 -1.8065 -2.5351 -11.0245 22 14 -2.2933 -2.7692 -13.6695 23 16 -2.3648 -5.8773 -13.0228 24 6 -2.4647 -7.1692 -11.8358 25 6 -2.0489 -6.7271 -10.6518 26 7 -1.8523 -4.8010 -8.3154 27 6 -1.4465 -4.1936 -7.2171 28 6 -0.4886 -2.8565 -2.4483 29 6 0.0209 -2.1349 -1.1991 30 1 -0.3429 1.0564 -2.4486 31 1 1.1104 0.0287 -2.4486 32 1 -0.1253 -0.1794 -4.5879 33 1 -1.5790 -0.6933 -3.6982 34 1 -1.2762 -3.3575 -4.8510 35 1 1.3134 -2.7352 -8.5490 36 1 -0.3338 -3.2598 -12.2792 37 1 -2.7546 -2.5625 -10.8360 38 1 -3.7613 -2.9104 -13.4948 39 1 -1.9498 -1.3523 -13.9517 40 1 -2.8074 -8.1731 -12.0382 41 1 -2.0169 -7.3473 -9.7683 42 1 -2.0061 -4.2909 -6.2985 43 1 -1.5786 -2.8568 -2.4485 44 1 -0.1246 -3.8839 -2.4478 45 1 -0.3428 -2.6484 -0.3091 46 1 1.1109 -2.1345 -1.1989 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081502_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:30:56 Heat of formation + Delta-G solvation = 134.075923 kcal Electronic energy + Delta-G solvation = -29800.914516 eV Core-core repulsion = 25709.775028 eV Total energy + Delta-G solvation = -4091.139488 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.61609 -43.05714 -41.64056 -40.06515 -39.23059 -38.14839 -36.30255 -35.48548 -34.21846 -34.02490 -32.23343 -31.22656 -28.69091 -26.49337 -26.34405 -26.15924 -25.33915 -24.43199 -23.54080 -22.98540 -21.47452 -21.38707 -21.23287 -20.15046 -19.89553 -19.72101 -19.64763 -18.67109 -18.27471 -17.75942 -17.66309 -17.30415 -17.07575 -16.98358 -16.66128 -16.49512 -16.20452 -16.09877 -15.83995 -15.62110 -15.43222 -15.30323 -14.84661 -14.78901 -14.55543 -14.49047 -14.46448 -14.25159 -14.22008 -13.60634 -13.51121 -13.30399 -13.03526 -12.86931 -12.70665 -12.33197 -12.01169 -11.74909 -11.51116 -11.35212 -11.06834 -10.32526 -9.99143 -5.66654 -1.63458 -1.23862 -0.73777 -0.67289 -0.14165 0.22544 0.61973 0.62055 0.63067 0.66079 0.71225 0.81413 0.99602 1.01929 1.33473 1.44428 1.54870 1.63048 1.89424 1.95849 1.97905 2.02872 2.17007 2.31024 2.32666 2.38023 2.43734 2.55993 2.60571 2.63390 2.72030 2.80484 2.86807 2.99187 3.01934 3.09948 3.23793 3.33379 3.49162 3.58681 3.65670 3.67888 3.83891 3.99697 4.03637 4.27569 4.43428 4.55628 4.66113 5.03761 5.13717 5.62170 5.93496 6.20791 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002131 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.701148 B =13136.674582 C =13848.807874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.437 0.563 4 H 0.437 0.563 5 C 0.024 3.976 6 H 0.144 0.856 7 C -0.139 4.139 8 C -0.132 4.132 9 C 0.142 3.858 10 H 0.098 0.902 11 N -0.728 5.728 12 C 0.581 3.419 13 O -0.524 6.524 14 C -0.266 4.266 15 C 0.223 3.777 16 N -0.486 5.486 17 C 0.425 3.575 18 C -0.055 4.055 19 C -0.212 4.212 20 C -0.028 4.028 21 O -0.520 6.520 22 Si 0.662 3.338 23 S 0.211 5.789 24 C -0.222 4.222 25 C -0.102 4.102 26 N -0.512 5.512 27 C 0.188 3.812 28 C -0.128 4.128 29 C -0.138 4.138 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.181 0.819 36 H 0.135 0.865 37 H 0.371 0.629 38 H -0.244 1.244 39 H -0.236 1.236 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 11.657 35.301 37.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.266 0.734 4 H 0.266 0.734 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.178 4.178 8 C -0.171 4.171 9 C 0.037 3.963 10 H 0.116 0.884 11 N -0.380 5.380 12 C 0.367 3.633 13 O -0.400 6.400 14 C -0.274 4.274 15 C 0.054 3.946 16 N -0.198 5.198 17 C 0.160 3.840 18 C -0.071 4.071 19 C -0.333 4.333 20 C -0.140 4.140 21 O -0.325 6.325 22 Si 0.560 3.440 23 S 0.478 5.522 24 C -0.357 4.357 25 C -0.132 4.132 26 N -0.225 5.225 27 C 0.019 3.981 28 C -0.166 4.166 29 C -0.176 4.176 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.239 0.761 35 H 0.198 0.802 36 H 0.152 0.848 37 H 0.218 0.782 38 H -0.168 1.168 39 H -0.159 1.159 40 H 0.192 0.808 41 H 0.165 0.835 42 H 0.184 0.816 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.326 12.312 32.306 34.598 hybrid contribution -0.281 0.384 3.797 3.827 sum 1.045 12.696 36.103 38.285 Atomic orbital electron populations 1.42646 1.21367 1.20748 1.18621 0.73716 0.73381 0.73446 1.23590 1.04456 0.95753 0.84198 0.83864 1.22050 1.03341 1.00234 0.92127 1.21944 1.02084 0.95601 0.97472 1.21019 1.00854 0.90687 0.83781 0.88384 1.45813 1.29769 1.53087 1.09343 1.17776 0.83082 0.80010 0.82405 1.90844 1.24092 1.40405 1.84648 1.21595 1.01559 1.06931 0.97329 1.23507 0.96367 0.89279 0.85430 1.68651 1.12790 1.07856 1.30519 1.20978 0.85686 0.87258 0.90040 1.16794 1.06628 0.93562 0.90141 1.24647 1.07618 1.02919 0.98111 1.24491 1.06796 0.84845 0.97854 1.86636 1.28802 1.67860 1.49214 0.95259 0.81059 0.87103 0.80581 1.83206 1.58710 0.99594 1.10707 1.25762 1.09338 1.04254 0.96335 1.20040 1.00486 0.93728 0.98905 1.68540 1.32430 1.22327 0.99216 1.23303 0.90575 0.87569 0.96636 1.21775 1.02474 1.00872 0.91505 1.22017 1.03376 0.90779 1.01422 0.88841 0.88942 0.88914 0.90269 0.76126 0.80213 0.84761 0.78218 1.16817 1.15911 0.80772 0.83488 0.81580 0.89803 0.88680 0.88585 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 24.07 4.15 -4.66 -0.02 24.05 16 2 H 0.43 -16.78 8.90 -39.29 -0.35 -17.13 16 3 H 0.44 -17.15 8.96 -39.29 -0.35 -17.50 16 4 H 0.44 -17.25 8.96 -39.29 -0.35 -17.61 16 5 C 0.02 -0.76 3.03 -67.70 -0.20 -0.97 16 6 H 0.14 -4.62 8.14 -51.94 -0.42 -5.04 16 7 C -0.14 3.79 5.43 -26.73 -0.15 3.64 16 8 C -0.13 2.82 5.49 -26.73 -0.15 2.68 16 9 C 0.14 -2.82 2.45 -67.93 -0.17 -2.99 16 10 H 0.10 -1.76 7.57 -51.93 -0.39 -2.16 16 11 N -0.73 12.02 5.03 -54.83 -0.28 11.75 16 12 C 0.58 -6.68 7.74 -12.45 -0.10 -6.78 16 13 O -0.52 4.27 16.09 5.29 0.09 4.35 16 14 C -0.27 2.61 5.91 -104.65 -0.62 1.99 16 15 C 0.22 -1.61 10.87 -16.81 -0.18 -1.80 16 16 N -0.49 2.57 8.73 -10.87 -0.09 2.47 16 17 C 0.43 -2.34 5.86 -156.68 -0.92 -3.26 16 18 C -0.05 0.30 5.58 -106.66 -0.60 -0.29 16 19 C -0.21 1.34 5.61 -35.54 -0.20 1.14 16 20 C -0.03 0.19 2.36 36.01 0.08 0.27 16 21 O -0.52 3.04 10.41 -35.23 -0.37 2.68 16 22 Si 0.66 -4.72 31.13 -169.99 -5.29 -10.01 16 23 S 0.21 -1.61 20.48 -107.50 -2.20 -3.81 16 24 C -0.22 1.66 11.19 28.93 0.32 1.99 16 25 C -0.10 0.66 10.06 -40.82 -0.41 0.25 16 26 N -0.51 3.57 10.30 -10.87 -0.11 3.46 16 27 C 0.19 -1.97 10.80 -16.80 -0.18 -2.15 16 28 C -0.13 3.01 5.39 -26.73 -0.14 2.87 16 29 C -0.14 3.91 5.43 -26.73 -0.15 3.77 16 30 H 0.09 -2.59 8.14 -51.93 -0.42 -3.01 16 31 H 0.09 -2.49 8.14 -51.93 -0.42 -2.91 16 32 H 0.09 -1.60 8.14 -51.93 -0.42 -2.02 16 33 H 0.08 -1.71 8.14 -51.93 -0.42 -2.14 16 34 H 0.40 -7.46 6.72 -40.82 -0.27 -7.74 16 35 H 0.18 -1.46 7.73 -52.49 -0.41 -1.87 16 36 H 0.13 -0.90 7.96 -51.93 -0.41 -1.31 16 37 H 0.37 -2.91 8.70 45.56 0.40 -2.52 16 38 H -0.24 1.28 7.11 56.52 0.40 1.68 16 39 H -0.24 1.00 7.11 56.52 0.40 1.40 16 40 H 0.17 -1.65 8.06 -52.49 -0.42 -2.08 16 41 H 0.15 -1.08 8.06 -52.49 -0.42 -1.50 16 42 H 0.17 -2.51 6.52 -52.49 -0.34 -2.85 16 43 H 0.08 -2.01 8.14 -51.93 -0.42 -2.43 16 44 H 0.09 -2.05 8.14 -51.93 -0.42 -2.47 16 45 H 0.10 -2.81 8.14 -51.93 -0.42 -3.23 16 46 H 0.09 -2.63 8.14 -51.93 -0.42 -3.05 16 LS Contribution 385.18 15.07 5.80 5.80 Total: 1.00 -43.83 385.18 -12.55 -56.39 By element: Atomic # 1 Polarization: -91.15 SS G_CDS: -6.34 Total: -97.48 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.75 Total: 0.36 kcal Atomic # 7 Polarization: 42.23 SS G_CDS: -0.50 Total: 41.73 kcal Atomic # 8 Polarization: 7.31 SS G_CDS: -0.28 Total: 7.03 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: -5.29 Total: -10.01 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.20 Total: -3.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -43.83 -12.55 -56.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.463 kcal (2) G-P(sol) polarization free energy of solvation -43.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds