Wall clock time and date at job start Mon Mar 8 2021 09:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00898 * 109.46909 * 1 2 4 4 H 1.00902 * 109.47409 * 240.00162 * 1 2 3 5 5 C 1.46901 * 109.47159 * 120.00111 * 1 2 3 6 6 H 1.08987 * 109.47245 * 180.02562 * 5 1 2 7 7 C 1.53008 * 109.46890 * 300.00334 * 5 1 2 8 8 C 1.53000 * 109.46952 * 179.97438 * 7 5 1 9 9 C 1.53005 * 109.47026 * 299.99978 * 8 7 5 10 10 H 1.09000 * 109.46690 * 299.99750 * 9 8 7 11 11 N 1.46502 * 109.46760 * 180.02562 * 9 8 7 12 12 C 1.34774 * 120.00191 * 84.99911 * 11 9 8 13 13 O 1.21588 * 120.00001 * 0.02562 * 12 11 9 14 14 C 1.47579 * 120.00334 * 179.97438 * 12 11 9 15 15 C 1.40143 * 120.85022 * 180.02562 * 14 12 11 16 16 N 1.31906 * 119.03297 * 179.97438 * 15 14 12 17 17 C 1.32878 * 120.88094 * 359.97438 * 16 15 14 18 18 C 1.47805 * 119.06816 * 180.02562 * 17 16 15 19 19 C 1.34754 * 122.89321 * 312.35333 * 18 17 16 20 20 C 1.50700 * 124.75771 * 359.96916 * 19 18 17 21 21 O 1.42894 * 109.46902 * 321.53215 * 20 19 18 22 22 Si 1.86305 * 109.47042 * 201.53121 * 20 19 18 23 23 S 1.70633 * 110.48722 * 179.97438 * 19 18 17 24 24 C 1.75721 * 91.72795 * 0.02562 * 23 19 18 25 25 C 1.33047 * 109.82166 * 359.72332 * 24 23 19 26 26 N 1.32883 * 121.86896 * 359.97438 * 17 16 15 27 27 C 1.31903 * 120.87794 * 0.02562 * 26 17 16 28 28 C 1.53000 * 109.47432 * 60.00121 * 9 8 7 29 29 C 1.53000 * 109.46916 * 299.99945 * 28 9 8 30 30 H 1.08997 * 109.46482 * 299.99906 * 7 5 1 31 31 H 1.08998 * 109.46912 * 59.99633 * 7 5 1 32 32 H 1.08997 * 109.47356 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47182 * 59.99427 * 8 7 5 34 34 H 0.97000 * 119.99825 * 264.99542 * 11 9 8 35 35 H 1.07997 * 120.48674 * 359.70133 * 15 14 12 36 36 H 1.09002 * 109.46947 * 81.52947 * 20 19 18 37 37 H 0.96703 * 114.00034 * 300.00231 * 21 20 19 38 38 H 1.48502 * 109.99618 * 58.67880 * 22 20 19 39 39 H 1.48500 * 109.99683 * 179.97438 * 22 20 19 40 40 H 1.07997 * 125.09169 * 180.02562 * 24 23 19 41 41 H 1.08000 * 123.12464 * 180.27768 * 25 24 23 42 42 H 1.08001 * 120.48307 * 179.97438 * 27 26 17 43 43 H 1.08999 * 109.47166 * 59.99406 * 28 9 8 44 44 H 1.08991 * 109.47227 * 180.02562 * 28 9 8 45 45 H 1.08997 * 109.47356 * 179.97438 * 29 28 9 46 46 H 1.09000 * 109.47182 * 300.00357 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4897 -0.6925 -1.1994 6 1 -1.5796 -0.6921 -1.1997 7 6 0.0204 0.0287 -2.4487 8 6 -0.4890 -0.6929 -3.6979 9 6 0.0215 -2.1353 -3.6975 10 1 1.1115 -2.1348 -3.6973 11 7 -0.4659 -2.8260 -4.8940 12 6 0.2116 -2.7231 -6.0546 13 8 1.2275 -2.0573 -6.1084 14 6 -0.2790 -3.4193 -7.2598 15 6 0.4117 -3.3249 -8.4755 16 7 -0.0587 -3.9624 -9.5302 17 6 -1.1701 -4.6863 -9.4500 18 6 -1.6609 -5.3845 -10.6566 19 6 -1.7679 -4.7829 -11.8577 20 6 -1.4107 -3.3450 -12.1332 21 8 -1.8065 -2.5351 -11.0245 22 14 -2.2933 -2.7692 -13.6695 23 16 -2.3648 -5.8773 -13.0228 24 6 -2.4647 -7.1692 -11.8358 25 6 -2.0489 -6.7271 -10.6518 26 7 -1.8523 -4.8010 -8.3154 27 6 -1.4465 -4.1936 -7.2171 28 6 -0.4886 -2.8565 -2.4483 29 6 0.0209 -2.1349 -1.1991 30 1 -0.3429 1.0564 -2.4486 31 1 1.1104 0.0287 -2.4486 32 1 -0.1253 -0.1794 -4.5879 33 1 -1.5790 -0.6933 -3.6982 34 1 -1.2762 -3.3575 -4.8510 35 1 1.3134 -2.7352 -8.5490 36 1 -0.3338 -3.2598 -12.2792 37 1 -2.7546 -2.5625 -10.8360 38 1 -3.7613 -2.9104 -13.4948 39 1 -1.9498 -1.3523 -13.9517 40 1 -2.8074 -8.1731 -12.0382 41 1 -2.0169 -7.3473 -9.7683 42 1 -2.0061 -4.2909 -6.2985 43 1 -1.5786 -2.8568 -2.4485 44 1 -0.1246 -3.8839 -2.4478 45 1 -0.3428 -2.6484 -0.3091 46 1 1.1109 -2.1345 -1.1989 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:30:55 Heat of formation + Delta-G solvation = 98.517398 kcal Electronic energy + Delta-G solvation = -29802.456450 eV Core-core repulsion = 25709.775028 eV Total energy + Delta-G solvation = -4092.681421 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.46749 -41.39146 -40.37659 -39.41851 -37.64780 -37.43249 -35.22968 -34.52848 -33.33049 -32.01935 -31.60947 -29.51956 -27.94606 -25.72036 -25.58840 -24.22416 -23.92817 -23.41090 -21.96092 -21.52779 -20.81055 -19.36331 -19.09399 -18.99406 -18.47606 -18.29971 -17.95150 -17.45376 -17.19924 -17.06448 -16.50740 -16.45421 -15.96171 -15.88338 -15.63042 -15.32357 -15.13629 -14.98867 -14.66054 -14.23840 -14.16942 -14.02319 -13.93963 -13.71282 -13.63082 -13.37761 -12.95028 -12.88272 -12.54239 -12.49379 -12.41117 -12.26576 -12.12277 -11.78871 -11.70026 -11.50230 -11.19592 -11.14419 -10.81889 -10.47281 -10.23971 -9.75964 -9.39570 -5.16262 -0.98049 -0.11019 -0.06620 0.43815 0.78122 1.14435 1.33609 1.49167 1.55245 1.70745 1.79755 1.90281 2.60266 2.64023 3.05579 3.09437 3.14144 3.23341 3.25155 3.48327 3.57519 3.59900 3.69664 3.75306 3.89393 3.94248 3.97186 4.10213 4.21418 4.24400 4.34075 4.35311 4.47196 4.49471 4.51135 4.56240 4.62249 4.70382 4.85471 4.87455 4.97375 5.05285 5.05455 5.07639 5.14753 5.17430 5.22293 5.23937 5.40254 5.71878 6.19002 6.24935 6.81818 6.94502 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002131 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.701148 B =13136.674582 C =13848.807874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.442 0.558 3 H 0.450 0.550 4 H 0.452 0.548 5 C 0.053 3.947 6 H 0.159 0.841 7 C -0.138 4.138 8 C -0.133 4.133 9 C 0.133 3.867 10 H 0.072 0.928 11 N -0.709 5.709 12 C 0.578 3.422 13 O -0.567 6.567 14 C -0.258 4.258 15 C 0.200 3.800 16 N -0.510 5.510 17 C 0.407 3.593 18 C -0.069 4.069 19 C -0.225 4.225 20 C -0.032 4.032 21 O -0.533 6.533 22 Si 0.735 3.265 23 S 0.232 5.768 24 C -0.218 4.218 25 C -0.117 4.117 26 N -0.525 5.525 27 C 0.194 3.806 28 C -0.126 4.126 29 C -0.138 4.138 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.414 0.586 35 H 0.176 0.824 36 H 0.129 0.871 37 H 0.377 0.623 38 H -0.266 1.266 39 H -0.278 1.278 40 H 0.195 0.805 41 H 0.151 0.849 42 H 0.213 0.787 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 11.694 38.787 40.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.177 4.177 8 C -0.172 4.172 9 C 0.030 3.970 10 H 0.090 0.910 11 N -0.360 5.360 12 C 0.364 3.636 13 O -0.446 6.446 14 C -0.266 4.266 15 C 0.032 3.968 16 N -0.223 5.223 17 C 0.142 3.858 18 C -0.086 4.086 19 C -0.346 4.346 20 C -0.143 4.143 21 O -0.339 6.339 22 Si 0.636 3.364 23 S 0.499 5.501 24 C -0.354 4.354 25 C -0.146 4.146 26 N -0.239 5.239 27 C 0.026 3.974 28 C -0.164 4.164 29 C -0.176 4.176 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.193 0.807 36 H 0.147 0.853 37 H 0.225 0.775 38 H -0.191 1.191 39 H -0.204 1.204 40 H 0.212 0.788 41 H 0.169 0.831 42 H 0.230 0.770 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.136 0.864 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.099 12.339 35.868 37.931 hybrid contribution 0.176 0.407 2.783 2.818 sum 0.077 12.745 38.651 40.698 Atomic orbital electron populations 1.42248 1.21980 1.21097 1.16712 0.72781 0.71892 0.71660 1.22876 1.04908 0.93267 0.84266 0.82351 1.21940 1.03155 1.00675 0.91884 1.21854 1.02363 0.94403 0.98618 1.21359 0.99630 0.92167 0.83880 0.90969 1.45844 1.29183 1.52141 1.08878 1.17660 0.82978 0.79681 0.83249 1.90819 1.26076 1.42383 1.85353 1.21772 1.01281 1.06313 0.97212 1.23583 0.96923 0.89821 0.86451 1.68577 1.13472 1.08695 1.31559 1.21060 0.86047 0.87914 0.90747 1.17047 1.06875 0.94150 0.90549 1.24718 1.08253 1.03114 0.98564 1.24607 1.06701 0.85046 0.97926 1.86617 1.29500 1.68088 1.49705 0.94438 0.78694 0.84098 0.79131 1.83038 1.58074 0.99032 1.09999 1.26053 1.08354 1.05073 0.95882 1.20141 1.01350 0.93562 0.99592 1.68573 1.32627 1.23056 0.99646 1.23999 0.90207 0.85989 0.97231 1.21756 1.03153 0.99868 0.91632 1.21983 1.03418 0.92713 0.99462 0.87655 0.89410 0.94054 0.89587 0.74766 0.80708 0.85324 0.77470 1.19069 1.20370 0.78753 0.83147 0.77044 0.88559 0.90777 0.86355 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.75 4.15 -168.67 -0.70 47.05 16 2 H 0.44 -34.75 8.90 -89.69 -0.80 -35.54 16 3 H 0.45 -36.09 8.96 -89.70 -0.80 -36.89 16 4 H 0.45 -36.71 8.96 -89.69 -0.80 -37.51 16 5 C 0.05 -3.41 3.03 44.92 0.14 -3.28 16 6 H 0.16 -10.58 8.14 -2.39 -0.02 -10.60 16 7 C -0.14 7.40 5.43 30.60 0.17 7.56 16 8 C -0.13 5.36 5.49 30.60 0.17 5.52 16 9 C 0.13 -4.96 2.45 44.99 0.11 -4.85 16 10 H 0.07 -2.29 7.57 -2.39 -0.02 -2.31 16 11 N -0.71 21.60 5.03 -445.65 -2.24 19.36 16 12 C 0.58 -11.17 7.74 86.71 0.67 -10.50 16 13 O -0.57 6.44 16.09 -3.99 -0.06 6.37 16 14 C -0.26 4.20 5.91 -19.89 -0.12 4.08 16 15 C 0.20 -2.01 10.87 85.14 0.93 -1.09 16 16 N -0.51 3.35 8.73 -188.30 -1.64 1.70 16 17 C 0.41 -3.20 5.86 137.21 0.80 -2.40 16 18 C -0.07 0.58 5.58 -21.18 -0.12 0.46 16 19 C -0.23 2.31 5.61 24.89 0.14 2.45 16 20 C -0.03 0.33 2.36 71.24 0.17 0.50 16 21 O -0.53 4.44 10.41 -148.98 -1.55 2.89 16 22 Si 0.74 -8.80 31.13 68.60 2.14 -6.67 16 23 S 0.23 -3.25 20.48 -56.49 -1.16 -4.41 16 24 C -0.22 3.07 11.19 66.66 0.75 3.81 16 25 C -0.12 1.29 10.06 21.47 0.22 1.51 16 26 N -0.53 6.15 10.30 -188.29 -1.94 4.21 16 27 C 0.19 -3.71 10.80 85.15 0.92 -2.79 16 28 C -0.13 5.81 5.39 30.59 0.16 5.97 16 29 C -0.14 7.89 5.43 30.60 0.17 8.05 16 30 H 0.11 -5.82 8.14 -2.39 -0.02 -5.84 16 31 H 0.09 -4.57 8.14 -2.39 -0.02 -4.59 16 32 H 0.04 -1.20 8.14 -2.39 -0.02 -1.22 16 33 H 0.09 -3.60 8.14 -2.39 -0.02 -3.61 16 34 H 0.41 -14.86 6.72 -92.71 -0.62 -15.48 16 35 H 0.18 -1.87 7.73 -2.91 -0.02 -1.89 16 36 H 0.13 -1.26 7.96 -2.39 -0.02 -1.28 16 37 H 0.38 -4.74 8.70 -74.06 -0.64 -5.39 16 38 H -0.27 2.28 7.11 99.48 0.71 2.99 16 39 H -0.28 1.46 7.11 99.48 0.71 2.16 16 40 H 0.20 -3.69 8.06 -2.91 -0.02 -3.71 16 41 H 0.15 -1.90 8.06 -2.91 -0.02 -1.93 16 42 H 0.21 -6.38 6.52 -2.91 -0.02 -6.40 16 43 H 0.10 -4.66 8.14 -2.39 -0.02 -4.67 16 44 H 0.07 -3.07 8.14 -2.39 -0.02 -3.09 16 45 H 0.12 -7.17 8.14 -2.39 -0.02 -7.19 16 46 H 0.09 -5.12 8.14 -2.39 -0.02 -5.14 16 Total: 1.00 -99.14 385.18 -4.46 -103.60 By element: Atomic # 1 Polarization: -186.58 SS G_CDS: -2.56 Total: -189.14 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 5.27 Total: 15.03 kcal Atomic # 7 Polarization: 78.84 SS G_CDS: -6.53 Total: 72.32 kcal Atomic # 8 Polarization: 10.88 SS G_CDS: -1.61 Total: 9.26 kcal Atomic # 14 Polarization: -8.80 SS G_CDS: 2.14 Total: -6.67 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.16 Total: -4.41 kcal Total: -99.14 -4.46 -103.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.118 kcal (2) G-P(sol) polarization free energy of solvation -99.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds