Wall clock time and date at job start Mon Mar 8 2021 09:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00904 * 109.46618 * 1 2 4 4 H 1.00898 * 109.46800 * 240.00114 * 1 2 3 5 5 C 1.46896 * 109.47223 * 119.99831 * 1 2 3 6 6 H 1.09001 * 109.46937 * 180.02562 * 5 1 2 7 7 C 1.52999 * 109.47195 * 299.99931 * 5 1 2 8 8 C 1.52998 * 109.47217 * 180.02562 * 7 5 1 9 9 C 1.52998 * 109.47084 * 300.00262 * 8 7 5 10 10 H 1.09006 * 109.47150 * 299.99554 * 9 8 7 11 11 N 1.46507 * 109.47024 * 180.02562 * 9 8 7 12 12 C 1.34781 * 119.99864 * 155.00299 * 11 9 8 13 13 O 1.21588 * 119.99876 * 359.97438 * 12 11 9 14 14 C 1.47582 * 119.99641 * 180.02562 * 12 11 9 15 15 C 1.40267 * 120.44479 * 179.72546 * 14 12 11 16 16 C 1.36934 * 118.51492 * 179.72840 * 15 14 12 17 17 C 1.39624 * 119.34579 * 0.55641 * 16 15 14 18 18 C 1.47958 * 119.57104 * 179.67313 * 17 16 15 19 19 C 1.34655 * 122.87657 * 132.30424 * 18 17 16 20 20 C 1.50697 * 124.74955 * 359.97438 * 19 18 17 21 21 O 1.42895 * 109.47061 * 321.49170 * 20 19 18 22 22 Si 1.86304 * 109.47435 * 201.49049 * 20 19 18 23 23 S 1.70637 * 110.50254 * 180.02562 * 19 18 17 24 24 C 1.75726 * 91.71103 * 359.97438 * 23 19 18 25 25 C 1.33100 * 109.80097 * 359.72806 * 24 23 19 26 26 N 1.32918 * 120.85694 * 359.70024 * 17 16 15 27 27 C 1.31539 * 121.60835 * 0.02562 * 26 17 16 28 28 C 1.52999 * 109.47307 * 59.99793 * 9 8 7 29 29 C 1.52998 * 109.47124 * 60.00204 * 5 1 2 30 30 H 1.09006 * 109.47211 * 60.00363 * 7 5 1 31 31 H 1.09002 * 109.47446 * 300.00195 * 7 5 1 32 32 H 1.08995 * 109.47338 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.47251 * 59.99862 * 8 7 5 34 34 H 0.96993 * 120.00064 * 334.99319 * 11 9 8 35 35 H 1.08005 * 120.74140 * 359.97438 * 15 14 12 36 36 H 1.08000 * 120.33152 * 180.25360 * 16 15 14 37 37 H 1.08997 * 109.46920 * 81.49209 * 20 19 18 38 38 H 0.96697 * 114.00313 * 299.99275 * 21 20 19 39 39 H 1.48497 * 110.00111 * 179.97438 * 22 20 19 40 40 H 1.48503 * 109.99880 * 301.32376 * 22 20 19 41 41 H 1.08003 * 125.09973 * 179.97438 * 24 23 19 42 42 H 1.07995 * 123.12645 * 180.24140 * 25 24 23 43 43 H 1.08001 * 119.71346 * 180.02562 * 27 26 17 44 44 H 1.09007 * 109.47122 * 60.00342 * 28 9 8 45 45 H 1.09002 * 109.47446 * 179.97438 * 28 9 8 46 46 H 1.08995 * 109.47372 * 59.99608 * 29 5 1 47 47 H 1.09006 * 109.47150 * 299.99556 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9514 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4897 -0.6924 -1.1994 6 1 -1.5797 -0.6920 -1.1996 7 6 0.0203 0.0288 -2.4486 8 6 -0.4903 -0.6920 -3.6979 9 6 0.0192 -2.1347 -3.6982 10 1 1.1092 -2.1351 -3.6985 11 7 -0.4692 -2.8247 -4.8948 12 6 0.2073 -3.8817 -5.3864 13 8 1.2231 -4.2622 -4.8372 14 6 -0.2844 -4.5764 -6.5921 15 6 0.4153 -5.6738 -7.1151 16 6 -0.0795 -6.2925 -8.2321 17 6 -1.2502 -5.8095 -8.8199 18 6 -1.7852 -6.4697 -10.0312 19 6 -3.0801 -6.8140 -10.1644 20 6 -4.1426 -6.5810 -9.1214 21 8 -3.5950 -6.8169 -7.8228 22 14 -5.5673 -7.7449 -9.4154 23 16 -3.3494 -7.5525 -11.6790 24 6 -1.6581 -7.3791 -12.1233 25 6 -0.9916 -6.7835 -11.1371 26 7 -1.8900 -4.7640 -8.3059 27 6 -1.4496 -4.1463 -7.2313 28 6 -0.4908 -2.8559 -2.4490 29 6 0.0203 -2.1349 -1.1994 30 1 1.1103 0.0288 -2.4487 31 1 -0.3430 1.0565 -2.4486 32 1 -0.1274 -0.1779 -4.5878 33 1 -1.5803 -0.6916 -3.6976 34 1 -1.2794 -2.5210 -5.3330 35 1 1.3218 -6.0255 -6.6450 36 1 0.4335 -7.1426 -8.6570 37 1 -4.4951 -5.5517 -9.1856 38 1 -3.2610 -7.7151 -7.6939 39 1 -6.6217 -7.5255 -8.3929 40 1 -6.1253 -7.5314 -10.7750 41 1 -1.2252 -7.7034 -13.0581 42 1 0.0653 -6.5669 -11.1857 43 1 -1.9940 -3.2999 -6.8393 44 1 -1.5809 -2.8556 -2.4488 45 1 -0.1283 -3.8839 -2.4494 46 1 -0.3430 -2.6488 -0.3095 47 1 1.1103 -2.1350 -1.1995 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081502_17119696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:34:49 Heat of formation + Delta-G solvation = 83.469566 kcal Electronic energy + Delta-G solvation = -29697.885295 eV Core-core repulsion = 25669.977261 eV Total energy + Delta-G solvation = -4027.908033 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.137 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.94204 -41.21049 -40.28447 -39.06212 -37.42225 -37.38462 -34.65294 -33.68845 -32.67659 -32.01633 -31.41791 -29.42754 -27.42976 -25.27540 -24.80074 -24.18899 -23.70873 -23.06527 -21.83752 -21.48887 -20.51676 -19.28062 -18.88491 -18.48949 -18.30397 -18.07310 -17.72273 -17.42532 -16.86317 -16.67460 -16.25674 -16.18622 -16.11821 -15.59422 -15.26196 -15.22126 -14.96194 -14.82855 -14.46100 -14.15955 -14.14113 -14.06898 -13.81953 -13.69821 -13.53606 -13.36803 -13.32794 -12.90408 -12.58473 -12.49334 -12.26719 -12.26332 -11.69605 -11.63539 -11.53044 -11.36143 -11.05328 -10.79677 -10.56743 -10.35516 -10.14671 -9.70861 -9.28368 -5.12341 -0.70338 -0.00615 0.23341 0.46856 0.84461 1.22252 1.42252 1.53276 1.56005 1.80628 1.87438 2.00719 2.80958 3.07575 3.09844 3.24302 3.38105 3.53224 3.58824 3.65437 3.69743 3.73472 3.79222 3.88489 3.93078 4.00554 4.10329 4.16415 4.21874 4.29727 4.35067 4.43288 4.47681 4.51374 4.55780 4.60002 4.62776 4.70347 4.85063 4.88217 4.93855 4.97233 5.01852 5.05360 5.07310 5.20036 5.20187 5.23030 5.32212 5.43076 5.50096 6.32227 6.58116 6.82149 7.02784 Molecular weight = 361.14amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.002210 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.683972 B =12664.735982 C =13470.341243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.442 0.558 3 H 0.451 0.549 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.137 4.137 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.714 5.714 12 C 0.570 3.430 13 O -0.573 6.573 14 C -0.208 4.208 15 C -0.022 4.022 16 C -0.165 4.165 17 C 0.224 3.776 18 C -0.068 4.068 19 C -0.227 4.227 20 C -0.012 4.012 21 O -0.537 6.537 22 Si 0.717 3.283 23 S 0.181 5.819 24 C -0.216 4.216 25 C -0.126 4.126 26 N -0.481 5.481 27 C 0.146 3.854 28 C -0.132 4.132 29 C -0.137 4.137 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.412 0.588 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.114 0.886 38 H 0.387 0.613 39 H -0.273 1.273 40 H -0.262 1.262 41 H 0.189 0.811 42 H 0.159 0.841 43 H 0.182 0.818 44 H 0.083 0.917 45 H 0.041 0.959 46 H 0.106 0.894 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 21.805 30.930 38.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.283 0.717 4 H 0.281 0.719 5 C -0.053 4.053 6 H 0.175 0.825 7 C -0.175 4.175 8 C -0.165 4.165 9 C 0.029 3.971 10 H 0.089 0.911 11 N -0.365 5.365 12 C 0.357 3.643 13 O -0.453 6.453 14 C -0.213 4.213 15 C -0.049 4.049 16 C -0.185 4.185 17 C 0.086 3.914 18 C -0.083 4.083 19 C -0.347 4.347 20 C -0.125 4.125 21 O -0.343 6.343 22 Si 0.620 3.380 23 S 0.447 5.553 24 C -0.352 4.352 25 C -0.155 4.155 26 N -0.189 5.189 27 C -0.014 4.014 28 C -0.172 4.172 29 C -0.176 4.176 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.250 0.750 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.132 0.868 38 H 0.235 0.765 39 H -0.199 1.199 40 H -0.188 1.188 41 H 0.206 0.794 42 H 0.176 0.824 43 H 0.199 0.801 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.125 0.875 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.946 21.667 29.873 37.021 hybrid contribution 2.121 0.578 0.411 2.236 sum 5.067 22.245 30.284 37.916 Atomic orbital electron populations 1.42237 1.21984 1.21085 1.16657 0.72756 0.71673 0.71857 1.22860 1.04871 0.92652 0.84941 0.82454 1.21974 1.03434 1.00880 0.91218 1.21754 1.03002 0.91821 0.99908 1.21332 0.99503 0.92629 0.83597 0.91063 1.45919 1.29255 1.30991 1.30335 1.18041 0.82859 0.80322 0.83058 1.90788 1.26251 1.66610 1.61668 1.21013 0.99938 1.00868 0.99478 1.21470 0.98247 0.91844 0.93294 1.21935 0.97068 1.02473 0.97054 1.19514 0.89928 0.90178 0.91764 1.17498 0.92581 1.03395 0.94807 1.24653 0.99139 1.08063 1.02848 1.24352 0.99531 1.06487 0.82129 1.86486 1.81934 1.36974 1.28884 0.94180 0.77105 0.87608 0.79107 1.83523 1.08798 1.55304 1.07644 1.25980 0.96597 1.07419 1.05159 1.20335 1.01892 1.01078 0.92187 1.67766 1.31373 1.08046 1.11728 1.23201 0.91347 0.97212 0.89637 1.21854 1.02235 0.99216 0.93858 1.21944 1.03164 0.93437 0.99007 0.88984 0.86417 0.90977 0.88849 0.75000 0.83663 0.82590 0.86848 0.76484 1.19914 1.18833 0.79368 0.82351 0.80082 0.89811 0.93961 0.87532 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.29 4.15 -168.69 -0.70 46.58 16 2 H 0.44 -34.53 8.90 -89.69 -0.80 -35.33 16 3 H 0.45 -36.39 8.96 -89.69 -0.80 -37.19 16 4 H 0.45 -35.88 8.96 -89.70 -0.80 -36.68 16 5 C 0.05 -3.36 3.02 44.92 0.14 -3.22 16 6 H 0.16 -10.31 8.14 -2.39 -0.02 -10.33 16 7 C -0.14 7.67 5.43 30.59 0.17 7.83 16 8 C -0.13 5.59 5.39 30.59 0.16 5.75 16 9 C 0.13 -4.70 2.45 44.99 0.11 -4.59 16 10 H 0.07 -2.15 7.58 -2.38 -0.02 -2.16 16 11 N -0.71 19.96 5.03 -445.63 -2.24 17.71 16 12 C 0.57 -10.09 7.74 86.71 0.67 -9.42 16 13 O -0.57 5.86 16.07 -3.99 -0.06 5.79 16 14 C -0.21 3.31 5.89 -19.97 -0.12 3.20 16 15 C -0.02 0.32 9.65 22.46 0.22 0.53 16 16 C -0.17 2.38 9.54 22.30 0.21 2.59 16 17 C 0.22 -2.65 5.05 41.89 0.21 -2.44 16 18 C -0.07 0.79 5.46 -21.17 -0.12 0.68 16 19 C -0.23 2.73 5.61 24.86 0.14 2.87 16 20 C -0.01 0.15 2.38 71.23 0.17 0.32 16 21 O -0.54 7.18 10.41 -148.98 -1.55 5.63 16 22 Si 0.72 -9.51 31.13 68.60 2.14 -7.38 16 23 S 0.18 -2.36 20.48 -56.49 -1.16 -3.52 16 24 C -0.22 3.13 11.20 66.67 0.75 3.88 16 25 C -0.13 1.71 9.88 21.47 0.21 1.93 16 26 N -0.48 5.50 8.73 -183.84 -1.60 3.89 16 27 C 0.15 -2.47 10.71 85.08 0.91 -1.56 16 28 C -0.13 5.14 5.50 30.61 0.17 5.31 16 29 C -0.14 7.23 5.43 30.61 0.17 7.39 16 30 H 0.09 -5.07 8.14 -2.38 -0.02 -5.09 16 31 H 0.12 -6.98 8.14 -2.39 -0.02 -7.00 16 32 H 0.07 -2.83 8.14 -2.39 -0.02 -2.85 16 33 H 0.09 -4.29 8.14 -2.38 -0.02 -4.31 16 34 H 0.41 -13.29 6.65 -92.71 -0.62 -13.90 16 35 H 0.15 -2.08 7.72 -2.91 -0.02 -2.10 16 36 H 0.16 -2.79 8.05 -2.91 -0.02 -2.81 16 37 H 0.11 -1.18 7.96 -2.39 -0.02 -1.20 16 38 H 0.39 -7.45 8.70 -74.06 -0.64 -8.09 16 39 H -0.27 1.94 7.11 99.48 0.71 2.65 16 40 H -0.26 2.31 7.11 99.48 0.71 3.02 16 41 H 0.19 -3.49 8.06 -2.91 -0.02 -3.51 16 42 H 0.16 -2.64 8.06 -2.91 -0.02 -2.67 16 43 H 0.18 -4.51 6.41 -2.91 -0.02 -4.53 16 44 H 0.08 -3.35 8.14 -2.38 -0.02 -3.37 16 45 H 0.04 -1.18 8.14 -2.39 -0.02 -1.20 16 46 H 0.11 -5.82 8.14 -2.39 -0.02 -5.84 16 47 H 0.09 -4.56 8.14 -2.38 -0.02 -4.58 16 Total: 1.00 -95.74 389.84 -3.59 -99.33 By element: Atomic # 1 Polarization: -186.52 SS G_CDS: -2.58 Total: -189.09 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 4.17 Total: 21.05 kcal Atomic # 7 Polarization: 72.74 SS G_CDS: -4.55 Total: 68.19 kcal Atomic # 8 Polarization: 13.03 SS G_CDS: -1.62 Total: 11.42 kcal Atomic # 14 Polarization: -9.51 SS G_CDS: 2.14 Total: -7.38 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -1.16 Total: -3.52 kcal Total: -95.74 -3.59 -99.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_17119696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.799 kcal (2) G-P(sol) polarization free energy of solvation -95.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds